Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001858-TA|BGIBMGA001858-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
         (529 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   1.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 19/75 (25%), Positives = 28/75 (37%)

Query: 306 RQLSYAGAHHIMDETASQSTRIFEEPIKSDQQKSTAEEVIADITELVGTVEWTIEHIEGE 365
           +Q   +G H +    A      FE+ +       T  E+  ++  LV   E  I  I+  
Sbjct: 279 QQRVLSGYHALSGLKAPPGVEHFEDVVHKKCSNFTLPEIQHNLDVLVDMCEQDIIRIDRN 338

Query: 366 IHFPMPDIPALMDEQ 380
             F    I AL  EQ
Sbjct: 339 TRFNQDKIVALRQEQ 353


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,005
Number of Sequences: 317
Number of extensions: 4538
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 1
length of query: 529
length of database: 114,650
effective HSP length: 60
effective length of query: 469
effective length of database: 95,630
effective search space: 44850470
effective search space used: 44850470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)