GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001858-TA|BGIBMGA001858-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20030.2 68414.m02508 pathogenesis-related thaumatin family p...    36   0.067
At1g20030.1 68414.m02509 pathogenesis-related thaumatin family p...    36   0.067
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain...    33   0.62 
At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1) domain...    32   1.1  
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote...    31   2.5  
At5g04740.1 68418.m00486 ACT domain-containing protein contains ...    30   4.4  
At3g50450.1 68416.m05518 hypersensitive response protein 1 (HR1)...    30   4.4  
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit...    29   5.8  

>At1g20030.2 68414.m02508 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 316

 Score = 35.9 bits (79), Expect = 0.067
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 258 ESSYLTMLKMPDYVLTGITSGKAYIRLFEKQFREITVLTPENSQSTLSRQLSYAGAHHIM 317
           +SS  T  K P+YV+T   S    ++  E+   E    T  +S ST S Q+ Y GA  + 
Sbjct: 227 KSSTFTCAKSPNYVITFCPSPNTSLKSAEEHSTETMTTTSPSSGSTTSSQMVYEGA--LD 284

Query: 318 DETASQST 325
           + + S ST
Sbjct: 285 ESSGSPST 292


>At1g20030.1 68414.m02509 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 299

 Score = 35.9 bits (79), Expect = 0.067
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 258 ESSYLTMLKMPDYVLTGITSGKAYIRLFEKQFREITVLTPENSQSTLSRQLSYAGAHHIM 317
           +SS  T  K P+YV+T   S    ++  E+   E    T  +S ST S Q+ Y GA  + 
Sbjct: 210 KSSTFTCAKSPNYVITFCPSPNTSLKSAEEHSTETMTTTSPSSGSTTSSQMVYEGA--LD 267

Query: 318 DETASQST 325
           + + S ST
Sbjct: 268 ESSGSPST 275


>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 464

 Score = 32.7 bits (71), Expect = 0.62
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 245 YFIRQAQGEIPLAESSYLTMLKMPDYVLTGITSGKAYIRLFEKQFREITVL--TPENSQ- 301
           YF+ +   + PL  + YL +  +P + L   T+   ++ L +  +     L  T E S  
Sbjct: 334 YFLFEELCDRPLGAADYLGLFSVPFFGLHNRTAAYRFVTLVDVMYENKARLLCTAEGSPL 393

Query: 302 STLSRQLSYAGAHHIMDETASQSTRIFEEPIKSDQQKSTAEE-VIADITELVGTVEWTIE 360
             L R ++ + A  I   T+S+S +  +  +  D +   A++  I+ +TE+  + E+  +
Sbjct: 394 ELLERIVTISDAQQIAPRTSSRSRKSDDPDLCVDNELGFAKDRTISRLTEM-NSKEYLEQ 452

Query: 361 H 361
           H
Sbjct: 453 H 453


>At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein contains Pfam profiles PF00564:
           PB1 domain, PF00515: TPR Domain
          Length = 751

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 257 AESSYLTMLKMPDYVLTGITSGKAYIRLFEKQFREITVLTPENSQSTLSRQLSYAGAHHI 316
           +  + L   K  D  L  ITS  A ++L E     I    P+  +S     L      H+
Sbjct: 325 SSKAVLIKYKDNDGDLVTITS-TAELKLAESAADCILTKEPDTDKSDSVGMLRL----HV 379

Query: 317 MDETASQSTRIFEEPIKSDQQKSTAEEVIADITELVGTVEWTIEHIEGEI 366
           +D +  Q   + EE  +  ++K   EEVI+  TE +   E   E  + E+
Sbjct: 380 VDVSPEQEPMLLEEEEEEVEEKPVIEEVISSPTESLSETEINTEKTDKEV 429


>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 980

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 361 HIEGEIHFPMPDIP--ALMDEQRGRVGFNDPALTKQLEE--AVMMWQNHIDTTIAACLGK 416
           H+ GEI   + DIP   L+D  R  +  + P     L +   ++++ NH+  T+   LGK
Sbjct: 356 HLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGK 415


>At5g04740.1 68418.m00486 ACT domain-containing protein contains
           Pfam profile PF01842: ACT domain
          Length = 301

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 371 PDI-PALMDEQRGRVGFNDPALTKQLEEAVMMWQNHIDTTIAACLGKVREGEGPVAEYKY 429
           PD+ PAL D++R  VG     LTK ++  V    N ID+       K  + +  V     
Sbjct: 38  PDLSPALFDDRRKFVGGVMSLLTKSIKNRVYASINSIDSAATPSYPKSEDDDDVVPMPMV 97

Query: 430 WRERDAEISLLVEQL 444
             ++DA+    + QL
Sbjct: 98  MIDQDADPEATIVQL 112


>At3g50450.1 68416.m05518 hypersensitive response protein 1 (HR1)
           identical to HR1 [Arabidopsis thaliana] GI:12958166;
           contains Pfam profile PF05659: Arabidopsis
           broad-spectrum mildew resistance protein RPW8
          Length = 189

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 447 PMVVKILTLLEKAGSTYLEVIEDESPLQQVVETLPEMVESIYMMWVLSKGYKADETMVPL 506
           P V+KI TL E+    + +VIE+   L +    L +    + +  +L K Y+    +  L
Sbjct: 49  PFVIKIDTLTEEVDEPFRKVIEELKRLLEKAIRLVDAYAELKLRNLLRK-YRYKRRIKEL 107

Query: 507 LSRISWAL-CD-KLERFLDVHKL 527
            S + W +  D ++ ++LD+ KL
Sbjct: 108 DSSLRWMIDVDVQVNQWLDIKKL 130


>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
            factor (CPSF) A subunit C-terminal domain-containing
            protein similar to SP|Q9EPU4 Cleavage and polyadenylation
            specificity factor, 160 kDa subunit (CPSF 160 kDa
            subunit) {Mus musculus}; contains Pfam profile PF03178:
            CPSF A subunit region
          Length = 1442

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 430  WRERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLEVIEDESPLQQVVETLPEMVESIYM 489
            W+E+ +++SLL +  +         L++  GST    + DE    QV    P+M+ES   
Sbjct: 1242 WKEQGSQLSLLAKDFESLDCFATEFLID--GSTLSLAVSDEQKNIQVFYYAPKMIESWKG 1299

Query: 490  MWVLSK 495
            + +LS+
Sbjct: 1300 LKLLSR 1305


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,241
Number of Sequences: 28952
Number of extensions: 473010
Number of successful extensions: 1066
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 9
length of query: 529
length of database: 12,070,560
effective HSP length: 84
effective length of query: 445
effective length of database: 9,638,592
effective search space: 4289173440
effective search space used: 4289173440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)