Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001854-TA|BGIBMGA001854-PA|undefined
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0598 + 4443768-4443949,4444053-4444150,4444275-4444308,444... 48 1e-05
01_03_0248 + 14235808-14235989,14236538-14236635,14237171-142372... 46 3e-05
02_02_0074 + 6567362-6567550,6567685-6567753,6567869-6567970,656... 39 0.007
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 31 1.0
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 31 1.0
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 31 1.0
03_04_0206 - 18493178-18495310 31 1.4
05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508 31 1.8
02_05_1169 + 34656450-34656603,34657321-34657481,34657907-346579... 31 1.8
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312... 30 2.4
05_04_0350 + 20507006-20507578 30 3.2
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 30 3.2
06_01_0107 - 854756-854883,855126-856968 29 4.2
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 29 4.2
10_01_0190 + 2107854-2108135,2108215-2109272,2110561-2110681 29 5.6
08_01_0678 + 5878291-5878461,5879722-5879984,5881658-5881729,588... 29 5.6
02_04_0164 + 20484911-20485147,20486639-20487150,20487311-204873... 29 5.6
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941... 29 7.3
01_06_1264 + 35854600-35856849 29 7.3
11_06_0092 + 19973364-19975983,19976272-19976648 28 9.7
10_08_0489 + 18269824-18270270,18271659-18271948,18272341-182725... 28 9.7
07_01_0979 - 8270980-8271654,8271984-8272088 28 9.7
06_01_0892 - 6827510-6827590,6829348-6830412 28 9.7
>01_01_0598 +
4443768-4443949,4444053-4444150,4444275-4444308,
4444629-4444780,4444871-4445051,4445707-4445887,
4446034-4446142,4446324-4446451,4446758-4446832
Length = 379
Score = 48.0 bits (109), Expect = 1e-05
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 284 IICGGKGTGKSTMLRYLCNRLLD-HGPVLVIDLDPGQAEFTVAGNLSVTIVNEPL 337
++CG K GKST R L N LL +G V +D D GQ EF+ G LS +V+E L
Sbjct: 38 VVCGPKNAGKSTFSRLLLNSLLPRYGRVGYLDTDVGQPEFSPPGCLSFHVVDEAL 92
>01_03_0248 +
14235808-14235989,14236538-14236635,14237171-14237204,
14237731-14237900,14238060-14238240,14238288-14238498,
14239122-14239233,14239360-14239487,14240201-14240263
Length = 392
Score = 46.4 bits (105), Expect = 3e-05
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 264 EERPQWEQA-----YTYGTDPGARGIICGGKGTGKSTMLRYLCNRLLD-HGPVLVIDLDP 317
E +WE+A Y T P +CG +GKS R L N L+ + V +D D
Sbjct: 13 EREREWEEAAEAVAYDSCTWPPPVVAVCGPGNSGKSAFSRLLLNTLVGRYKKVAYLDTDV 72
Query: 318 GQAEFTVAGNLSVTIVNEPLLGPNFTHLKTPEK 350
GQ EFT G +S+ ++ E +L+TP++
Sbjct: 73 GQPEFTPPGFVSIHVLEEQAEDFKMLYLRTPKR 105
>02_02_0074 +
6567362-6567550,6567685-6567753,6567869-6567970,
6568386-6568627,6569057-6569195,6569298-6569333,
6569838-6569972,6570315-6570547,6571204-6571298,
6571331-6571374,6571808-6571888
Length = 454
Score = 38.7 bits (86), Expect = 0.007
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 280 GARGIICGGKGTGKSTMLRYLCNRLLDHG-PVLVIDLDPGQAEFTVAGNLSVTIVNEPL 337
G R II G +GKST+ + L + G +DLD GQ T+ G +S T + +P+
Sbjct: 121 GPRVIIVGPSDSGKSTLCKMLLSWAAKQGWKPTYVDLDIGQGSITIPGCISATPIEKPI 179
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 31.5 bits (68), Expect = 1.0
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 247 SDILGCSLYLKRPLRTYEERPQW--EQAYTYGTDPGARGIIC-GGKGTGKSTMLRYLCNR 303
+D+ GC +++ +R E P E+ G DP +G++C G GTGK+ + R + NR
Sbjct: 168 NDVGGCKEQIEK-MREVVELPMLHPEKFVKLGIDP-PKGVLCYGPPGTGKTLLARAVANR 225
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 31.5 bits (68), Expect = 1.0
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 247 SDILGCSLYLKRPLRTYEERPQW--EQAYTYGTDPGARGIIC-GGKGTGKSTMLRYLCNR 303
+D+ GC +++ +R E P E+ G DP +G++C G GTGK+ + R + NR
Sbjct: 168 NDVGGCKEQIEK-MREVVELPMLHPEKFVKLGIDP-PKGVLCYGPPGTGKTLLARAVANR 225
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 31.5 bits (68), Expect = 1.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 269 WEQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNRLL 305
W +TYGT G +G++ G+ S +R C+ LL
Sbjct: 636 WAVCFTYGTWFGVKGLVAAGRTFKNSPAIRKACDFLL 672
>03_04_0206 - 18493178-18495310
Length = 710
Score = 31.1 bits (67), Expect = 1.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 262 TYEERPQWE-QAYTYGTDPGARGIICGGKGTGKSTMLRYLCNRL 304
+Y RP ++ G D G R I G G GKST+L L L
Sbjct: 491 SYPNRPDFKLSGVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL 534
>05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508
Length = 654
Score = 30.7 bits (66), Expect = 1.8
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 206 YDGILSLGPLKDLKMDFVENNFSICELFTKTKNVQSCFHRAS-DILGCSLYLKRPLRTYE 264
Y G+L+ G + +K + N S ++ + + + HR+ +LGC + L++PL YE
Sbjct: 377 YRGVLADGTVVAVKCAKLGNTKSTEQVLNEVRVLSQVNHRSLVRLLGCCVDLEQPLMVYE 436
Query: 265 ERPQWEQA-YTYG 276
P A + YG
Sbjct: 437 FIPNGTLADHLYG 449
>02_05_1169 +
34656450-34656603,34657321-34657481,34657907-34657958,
34658289-34658425,34658775-34658861,34658939-34659226
Length = 292
Score = 30.7 bits (66), Expect = 1.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 263 YEERPQWEQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNR 303
Y+ +P + PG+R ++ G G+GK+T+L+ L +
Sbjct: 23 YDGQPPLFARFNLRIAPGSRCLLIGANGSGKTTLLKILAGK 63
>02_01_0427 -
3124209-3124307,3124453-3125240,3125510-3125867,
3125902-3126567
Length = 636
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 55 VPE-LGDVAVIDELEVETN------PETLTEIASIAVDETMPSENISNEEDSVDFTNKPN 107
+PE +G + ++EL + N P TL+ S+ + + S N S E +V+F+N PN
Sbjct: 271 IPESIGQLNRLEELLLNNNKMYGGIPSTLSNCTSL-ITINLRSNNFSGELVNVNFSNLPN 329
Query: 108 LDSVQIYY 115
L ++ + +
Sbjct: 330 LKALDLLW 337
>05_04_0350 + 20507006-20507578
Length = 190
Score = 29.9 bits (64), Expect = 3.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 97 EDSVDFTNKPNLDSVQIYYGTKHCVFVLKHPAILYFHGKVTMRALGGQM 145
E +T +P+ +Y GT C F + L + G++T R GG +
Sbjct: 76 EGVTGYTLRPSDGEFAVYLGTGECEFEVDGGYRLTYQGRITGRVAGGSI 124
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 29.9 bits (64), Expect = 3.2
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 55 VPE-LGDVAVIDELEVETN------PETLTEIASIAVDETMPSENISNEEDSVDFTNKPN 107
+PE +G + ++EL + N P TL+ S+ + + S N S E +V+F+N P+
Sbjct: 293 IPESIGQLNRLEELHLNNNKMFGSIPSTLSNCTSLKTID-LNSNNFSGELMNVNFSNLPS 351
Query: 108 LDSVQIYYGTKHCVFVLKHPAILYFHGKVT 137
L ++ + + +F K P +Y +T
Sbjct: 352 LQTLDL----RQNIFSGKIPETIYSCSNLT 377
>06_01_0107 - 854756-854883,855126-856968
Length = 656
Score = 29.5 bits (63), Expect = 4.2
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 141 LGGQMEVFGYNLKDQYQ-EVYAPRLNYALSVKTVESENNYQGLFSKLTAVGISVKEAE-E 198
+ Q ++ YN QY V APRL +A S+K ++S G + G + A+ E
Sbjct: 379 VASQDKILVYNTSTQYYGRVGAPRLLFATSIKDIKSVFAGSGGVMPASPAGKPLVAADRE 438
Query: 199 IVTTLGEYDGILSL 212
+ LG DG +++
Sbjct: 439 KLVILGLGDGYIAI 452
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 54 LVPELGDVAVIDELEVETNPETLTEIASIAVDETMPSENISNEEDSV 100
LVP+L + +VET + + ETMP ++I NEE+++
Sbjct: 397 LVPDLQPEPEVPSYQVETEEKVAELTVADPTVETMPLQDIHNEENAL 443
>10_01_0190 + 2107854-2108135,2108215-2109272,2110561-2110681
Length = 486
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 285 ICGGKGTGKSTMLRYLCN--RLLDHGPVLVIDLDPGQAEFTVAGNLS 329
+ GG GK T++ ++CN R+ H P++ + T GNLS
Sbjct: 171 VIGGHKVGKRTLVTHVCNDERIRSHFPLIFHISGANLSRITENGNLS 217
>08_01_0678 +
5878291-5878461,5879722-5879984,5881658-5881729,
5881807-5881878,5882092-5882166,5882443-5882517,
5883623-5883667,5883767-5883831,5883919-5884203,
5884234-5884298,5884435-5884636,5884735-5884905,
5885237-5885355,5886699-5886909,5887007-5887238,
5887325-5887475,5887547-5887945
Length = 890
Score = 29.1 bits (62), Expect = 5.6
Identities = 17/68 (25%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 55 VPE-LGDVAVIDELEVETN------PETLTEIASIAVDETMPSENISNEEDSVDFTNKPN 107
+P+ +G+++ ++ L+++ N P +L+++ + T+ + NIS++ SVDF+N N
Sbjct: 180 IPDYIGNLSNLEVLKLQGNKIEGPIPASLSKLVKLNSSLTLRNCNISDKLTSVDFSNFKN 239
Query: 108 LDSVQIYY 115
L + + +
Sbjct: 240 LTDLNLVW 247
>02_04_0164 +
20484911-20485147,20486639-20487150,20487311-20487399,
20487586-20487770,20487856-20487894,20488000-20488038
Length = 366
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 192 SVKEAEEIVTTLGEYDGILSLGPLKDLKMDFVENNFSICELFTKTKNVQSCF 243
+ ++ + LGE+DG LGP + +DF ++ F +C L ++ C+
Sbjct: 198 NARKPNKATDILGEHDGKPFLGPTNYIVVDF-KDLFDLCRLRAVDTSLLKCY 248
>06_01_1137 +
9412230-9412378,9412549-9412634,9413417-9413496,
9413826-9413881,9414038-9414086,9414692-9414841,
9414993-9415088,9415442-9415555,9415655-9415785,
9416171-9416408,9416603-9416656,9417100-9417117,
9417906-9418722,9418797-9418846
Length = 695
Score = 28.7 bits (61), Expect = 7.3
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 120 CVFVLKHPAILYFHGKVTMRALGGQMEVFGYNL 152
C FVL+HP I FH + R G EVF Y+L
Sbjct: 64 CDFVLEHPTISRFHAVLQFRNDG---EVFLYDL 93
>01_06_1264 + 35854600-35856849
Length = 749
Score = 28.7 bits (61), Expect = 7.3
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 285 ICGGKGTGKSTMLRYLCNRLLDHGPVLVIDLDPGQAEFTVAGNLSVTIVNEPLLGPNFTH 344
+ G G+GKST++ L NR+ + L+ V ++S ++ + LL P T
Sbjct: 146 VMGASGSGKSTLIDALANRISRDALKGSVTLNGEPLTGNVIKSISAYVMQDDLLFPMLTV 205
Query: 345 LKT 347
+T
Sbjct: 206 AET 208
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 73 PETLTEIASIAVDETMPSENISNEEDSVDFTNKPNLDSVQIYYGTKH 119
P+ + I+S+ + E + S +S + F+N P+L V +YY H
Sbjct: 215 PDPIWNISSLTIFEVI-SNKLSGTLPTNAFSNLPSLQEVYMYYNQFH 260
>10_08_0489 +
18269824-18270270,18271659-18271948,18272341-18272512,
18272608-18272730,18272832-18272960,18273061-18273255,
18273384-18273470,18273563-18273835,18274047-18274154,
18274769-18275116
Length = 723
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 271 QAYTYGTDPGARGIICGGKGTGKSTMLRYLCNRL 304
Q T +PG + G G+GKST+L L RL
Sbjct: 92 QGLTGHAEPGTITALMGPSGSGKSTLLDALAGRL 125
>07_01_0979 - 8270980-8271654,8271984-8272088
Length = 259
Score = 28.3 bits (60), Expect = 9.7
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 56 PELGDVAVIDELEVETNPETLTEIASIAVDETMPSENISNEEDSVDFTNKPNLDSVQIYY 115
P G+V V+ L P L A + VD+ + N+ N+ED +T P+ V + Y
Sbjct: 51 PITGEVDVLPHLRGSDRPPRLYACALLTVDD-LQYFNLGNDEDD-HYTTSPSSYRVVLMY 108
Query: 116 GTK 118
+
Sbjct: 109 NRR 111
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 244 HRASDILGCSLYLKRPLRTYEERPQWEQAYTYGTDPGARGIICGGK 289
H G S Y +P Y RPQ E+ TYG+ G+ G GG+
Sbjct: 107 HEQQQSYGSSGYGSKPQPAYGFRPQAEEENTYGSGYGS-GYGGGGR 151
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.136 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,909,909
Number of Sequences: 37544
Number of extensions: 405289
Number of successful extensions: 1155
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 25
length of query: 350
length of database: 14,793,348
effective HSP length: 83
effective length of query: 267
effective length of database: 11,677,196
effective search space: 3117811332
effective search space used: 3117811332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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