Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001854-TA|BGIBMGA001854-PA|undefined
(350 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low s... 54 2e-07
At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low s... 54 2e-07
At5g11010.1 68418.m01284 pre-mRNA cleavage complex-related low s... 54 2e-07
At3g04680.2 68416.m00502 pre-mRNA cleavage complex family protei... 36 0.031
At3g04680.1 68416.m00501 pre-mRNA cleavage complex family protei... 36 0.031
At5g39930.1 68418.m04842 expressed protein ; expression supporte... 33 0.28
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 31 0.87
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 31 1.1
At3g54540.1 68416.m06035 ABC transporter family protein similar ... 31 1.5
At2g22050.1 68415.m02619 kelch repeat-containing F-box family pr... 30 2.7
At1g78960.1 68414.m09206 lupeol synthase, putative / 2,3-oxidosq... 30 2.7
At5g44110.1 68418.m05397 ABC transporter family protein 29 3.5
At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar ... 29 3.5
At1g50750.1 68414.m05707 expressed protein 29 3.5
At1g43880.1 68414.m05055 hypothetical protein low similarity to ... 29 4.6
At1g17840.1 68414.m02208 ABC transporter family protein similar ... 29 4.6
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 29 6.1
At4g37160.1 68417.m05261 multi-copper oxidase type I family prot... 29 6.1
At4g26500.1 68417.m03813 BolA-like family protein / Fe-S metabol... 29 6.1
At2g37360.1 68415.m04582 ABC transporter family protein 29 6.1
At1g78480.1 68414.m09147 prenyltransferase/squalene oxidase repe... 29 6.1
At1g76740.1 68414.m08931 expressed protein weak similarity to fi... 29 6.1
At3g55720.1 68416.m06190 expressed protein contains Pfam profile... 28 8.1
At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e... 28 8.1
At3g13220.1 68416.m01654 ABC transporter family protein contains... 28 8.1
At2g28070.1 68415.m03408 ABC transporter family protein 28 8.1
At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) / 2,3-epox... 28 8.1
>At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low
similarity to SP|Q92989 Pre-mRNA cleavage complex II
protein Clp1 {Homo sapiens}
Length = 368
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 284 IICGGKGTGKSTMLRYLCNRLLD-HGPVLVIDLDPGQAEFTVAGNLSVTIVNEPLLGPNF 342
++CG K +GKST R L LL + V +D D GQ EFT G LS+TIV++ +L ++
Sbjct: 33 LVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQPEFTAPGFLSLTIVDKSILESDW 92
Query: 343 T--HLKTPEK 350
T +KTPE+
Sbjct: 93 TVPCVKTPER 102
>At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low
similarity to SP|Q92989 Pre-mRNA cleavage complex II
protein Clp1 {Homo sapiens}
Length = 368
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 284 IICGGKGTGKSTMLRYLCNRLLD-HGPVLVIDLDPGQAEFTVAGNLSVTIVNEPLLGPNF 342
++CG K +GKST R L LL + V +D D GQ EFT G LS+TIV++ +L ++
Sbjct: 33 LVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQPEFTAPGFLSLTIVDKSILESDW 92
Query: 343 T--HLKTPEK 350
T +KTPE+
Sbjct: 93 TVPCVKTPER 102
>At5g11010.1 68418.m01284 pre-mRNA cleavage complex-related low
similarity to SP|Q92989 Pre-mRNA cleavage complex II
protein Clp1 {Homo sapiens}
Length = 318
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 284 IICGGKGTGKSTMLRYLCNRLLD-HGPVLVIDLDPGQAEFTVAGNLSVTIVNEPLLGPNF 342
++CG K +GKST R L LL + V +D D GQ EFT G LS+TIV++ +L ++
Sbjct: 33 LVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQPEFTAPGFLSLTIVDKSILESDW 92
Query: 343 T--HLKTPEK 350
T +KTPE+
Sbjct: 93 TVPCVKTPER 102
>At3g04680.2 68416.m00502 pre-mRNA cleavage complex family protein
similar to Pre-mRNA cleavage complex II protein Clp1
(Swiss-Prot:Q92989) [Homo sapiens]
Length = 444
Score = 36.3 bits (80), Expect = 0.031
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 280 GARGIICGGKGTGKSTMLRYLCNRLLDHG--PVLVIDLDPGQAEFTVAGNLSVTIVNEPL 337
G R I+ G +GKST+ + L + G P V DLD GQ T+ G+++ + PL
Sbjct: 130 GPRVIVVGPTDSGKSTLTKMLLSWAAKQGWRPTFV-DLDVGQGSITIPGSIAAAPIEMPL 188
>At3g04680.1 68416.m00501 pre-mRNA cleavage complex family protein
similar to Pre-mRNA cleavage complex II protein Clp1
(Swiss-Prot:Q92989) [Homo sapiens]
Length = 444
Score = 36.3 bits (80), Expect = 0.031
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 280 GARGIICGGKGTGKSTMLRYLCNRLLDHG--PVLVIDLDPGQAEFTVAGNLSVTIVNEPL 337
G R I+ G +GKST+ + L + G P V DLD GQ T+ G+++ + PL
Sbjct: 130 GPRVIVVGPTDSGKSTLTKMLLSWAAKQGWRPTFV-DLDVGQGSITIPGSIAAAPIEMPL 188
>At5g39930.1 68418.m04842 expressed protein ; expression supported
by MPSS
Length = 423
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 280 GARGIICGGKGTGKSTMLRYLCNRLLDHG-PVLVIDLDPGQAEFTVAGNLS 329
G R II G +GKST+ + L N + G +DL+ GQ+ T+ G ++
Sbjct: 113 GPRVIIVGDIDSGKSTLAKMLLNWAVKDGWKPTFVDLNVGQSSITIPGTIA 163
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 31.5 bits (68), Expect = 0.87
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 247 SDILGCSLYLKRPLRTYEERPQW--EQAYTYGTDPGARGIIC-GGKGTGKSTMLRYLCNR 303
+D+ GC +++ +R E P E+ G DP +G++C G GTGK+ + R + NR
Sbjct: 168 NDVGGCKEQIEK-MREVVELPMLHPEKFVKLGIDP-PKGVLCYGPPGTGKTLLARAVANR 225
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 247 SDILGCSLYLKRPLRTYEERPQW--EQAYTYGTDPGARGIIC-GGKGTGKSTMLRYLCNR 303
SDI GC +++ +R E P E+ G DP +G++C G G+GK+ + R + NR
Sbjct: 205 SDIGGCKEQIEK-IREVVELPMLHPEKFVRLGIDP-PKGVLCYGPPGSGKTLVARAVANR 262
>At3g54540.1 68416.m06035 ABC transporter family protein similar to
ABC50 GI:10863747 from [Rattus norvegicus]
Length = 723
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 262 TYEERPQWEQAYT-YGTDPGARGIICGGKGTGKSTMLRYLCNRLL 305
+Y RP + + G D G R I G G GKST+L L L+
Sbjct: 504 SYPNRPDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLV 548
>At2g22050.1 68415.m02619 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 349
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 135 KVTMRALGGQMEVFGYNLKDQYQ-EVYAPRLNYALSVKTVESENNYQGLFSKLTAVGISV 193
+ ++ + G++ V G +D+ Q EVY P+ + K E E +GL ++L+AV +
Sbjct: 179 EASVGVINGKIYVIG-GCEDKIQVEVYDPKSRSWKTTKDPE-EKTQRGLMTRLSAVSLDW 236
Query: 194 KEAEEIVTTLGEYD 207
K V +G YD
Sbjct: 237 KVYTVEVGRIGVYD 250
>At1g78960.1 68414.m09206 lupeol synthase, putative /
2,3-oxidosqualene-triterpenoid cyclase, putative similar
to lupeol synthase GI:1762150 from [Arabidopsis
thaliana], 2,3-oxidosqualene-triterpenoid cyclase
[Arabidopsis thaliana] GI:2738027
Length = 763
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 273 YTYGTDPGARGIICGGKGTGKSTMLRYLCNRLLDHGP 309
Y + + G G+ GK T+L Y+C R+L GP
Sbjct: 157 YCHQNEDGGWGLHIEGKSVMFCTVLNYICLRMLGEGP 193
>At5g44110.1 68418.m05397 ABC transporter family protein
Length = 282
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 280 GARGIICGGKGTGKSTMLRYLCNRLLDHGPVLVIDLDPG---QAEFTVAGNLS 329
G+R ++ G G+GK+T+L+ L + + G +V LD E +G+LS
Sbjct: 39 GSRCLLVGANGSGKTTLLKILAGKHMVGGKNVVQVLDRSAFHDTELVCSGDLS 91
>At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar to
beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and
GI:8918271 from [Pisum sativum]
Length = 769
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 273 YTYGTDPGARGIICGGKGTGKSTMLRYLCNRLLDHGP 309
Y + + G G+ G T T L Y+C R+L GP
Sbjct: 157 YCHQNEDGGWGLHIEGNSTMFCTTLNYICMRILGEGP 193
>At1g50750.1 68414.m05707 expressed protein
Length = 816
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 170 VKTVESENNYQGLFSKLTAVGISVKEAEEIVTTLGEYDGILSLGPLKDLKMDFVENNFS 228
+ VE++NN G F KL ++ + EI GE D S + F ENN S
Sbjct: 540 ISRVEADNNDLGTFQKLASIRDEIVPPSEIAHRNGETDEAGSRAGTNMDESPFDENNSS 598
>At1g43880.1 68414.m05055 hypothetical protein low similarity to
protective antigen [Streptococcus pyogenes] GI:8996050,
fibrinogen-binding protein [Streptococcus equi]
GI:3093478
Length = 409
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 61 VAVIDELEVETNPETLTEIASIAVDETMPSENISNEEDSVDFTNKPNLDS 110
V + EVETN + +I +A+D T+ + E D ++ + N D+
Sbjct: 297 VLEVQAAEVETNLALIDQITKVAIDLTVEKPRLQAELDDLEARFQTNKDA 346
>At1g17840.1 68414.m02208 ABC transporter family protein similar to
ABC transporter GI:10280532 from [Homo sapiens]
Length = 703
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 278 DPGARGIICGGKGTGKSTMLRYLCNRL 304
+PG+ + G G+GKSTML L +RL
Sbjct: 78 EPGSLTALMGPSGSGKSTMLDALASRL 104
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 228 SICELFTKTKNVQSCFHRASDILGCSLYLKRPLRTYEERPQWEQAY 273
+I EL N + FH++ C + ++ ++TY P WE+ Y
Sbjct: 382 AIHELENHVSNSRGKFHKSCYERYCYVCKEKKMKTYNIHPFWEERY 427
>At4g37160.1 68417.m05261 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase
Length = 541
Score = 28.7 bits (61), Expect = 6.1
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 266 RPQWEQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNRLLDHGPVLVIDLDPGQAEFTVA 325
RP + ++ YGT P R ++ T LRY NR+ P + L + ++
Sbjct: 336 RPNPQGSFHYGTIPINRTLVLANAATLIYGKLRYTVNRISYINPTTPLKLADW---YNIS 392
Query: 326 GNLSV-TIVNEPLLGP 340
G TI++ P GP
Sbjct: 393 GVFDFKTIISTPTTGP 408
>At4g26500.1 68417.m03813 BolA-like family protein / Fe-S metabolism
associated domain-containing protein similar to SufE
protein [Erwinia chrysanthemi] GI:11342550; contains
Pfam profiles PF02657: Fe-S metabolism associated
domain, PF01722: BolA-like protein
Length = 371
Score = 28.7 bits (61), Expect = 6.1
Identities = 9/39 (23%), Positives = 24/39 (61%)
Query: 55 VPELGDVAVIDELEVETNPETLTEIASIAVDETMPSENI 93
+PE D A + E+++E+ P+ + ++ + +D++ N+
Sbjct: 237 IPETKDEANVPEVDLESKPDLVEDLGTEKIDDSESGSNV 275
>At2g37360.1 68415.m04582 ABC transporter family protein
Length = 755
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 285 ICGGKGTGKSTMLRYLCNRLLDHGPVLVIDLDPGQAEFTVAGNLSVTIVNEPLLGPNFT 343
+ G G+GKST++ L NR+ I L+ E ++ +S ++ + LL P T
Sbjct: 149 VLGASGSGKSTLIDALANRIAKDSLRGSITLNGEVLESSMQKVISAYVMQDDLLFPMLT 207
>At1g78480.1 68414.m09147 prenyltransferase/squalene oxidase
repeat-containing protein similar to beta-Amyrin
Synthase GI:3688600 from [Panax ginseng]
Length = 202
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 273 YTYGTDPGARGIICGGKGTGKSTMLRYLCNRLLDHGP 309
Y + D G G+ GK T L Y+C R+L GP
Sbjct: 133 YRHLNDDGGWGLHVEGKSFMFCTALNYICLRILREGP 169
>At1g76740.1 68414.m08931 expressed protein weak similarity to
fimbriae-associated protein Fap1 (GI:3929312)
[Streptococcus parasanguinis]; weak similarity to 1MDa_1
protein (GI:24620455) [Caenorhabditis elegans]
Length = 1532
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 57 ELGDVAVIDELEVETNPETLTEIASIAVDETMPSENISNEEDSVDFTNKPNL---DSVQI 113
E+ DV ++ E TNPE+ T + +DE+ S + EE V + + L Q
Sbjct: 1137 EIKDVELLGESNSSTNPESPTLFGNSELDESRDSSAATCEEAFVTTSPEKELLINPGKQE 1196
Query: 114 YYGTKHCVFVLKHPAILYFHGKVTMRALGGQMEVFGYN 151
V H A F G + + GG YN
Sbjct: 1197 QKEVDENVVQESHVAAPDFRGNTIVDSSGGIASKVSYN 1234
>At3g55720.1 68416.m06190 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 438
Score = 28.3 bits (60), Expect = 8.1
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 67 LEVETNPETLTEIASIAVDETMPSENISNEEDSVDFTNKPNLDSVQIYYGTKHCVFVLKH 126
L V+ L I + DE M ++E D+ + +D +QI + K V +L+
Sbjct: 295 LLVQLEDTYLVRIKTGLEDEDMVLWETTSETLIQDYKS---IDGIQIAHRGKTRVSLLRL 351
Query: 127 PAILYFHGKVTMRALGGQMEVFGYNLKDQYQEVYAP 162
L H K TM ++E G+N+K + + P
Sbjct: 352 DESLESHSKTTMEE-SWEIEEVGFNVKGLSSDFFLP 386
>At3g45130.1 68416.m04871 cycloartenol synthase, putative /
2,3-epoxysqualene--cycloartenol cyclase, putative /
(S)-2,3-epoxysqualene mutase, putative 77% similar to
cycloartenol synthase [SP|P38605|gi:452446] [PMID:
7505443]; oxidosqualene cyclase LcOSC2 - Luffa
cylindrica, EMBL:AB033335
Length = 748
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 269 WEQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNRLL 305
W +TY T G +G++ GK S +R C LL
Sbjct: 602 WGVCFTYATWFGIKGMLASGKTYESSLCIRKACGFLL 638
>At3g13220.1 68416.m01654 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter; similar to white
protein GB:Q27256 [Anopheles gambiae]
Length = 685
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 274 TYGTDPGARGIICGGKGTGKSTMLRYLCNRLLDH 307
T T PG + G G+GK+T+L+ + RL D+
Sbjct: 111 TGSTGPGEILALMGPSGSGKTTLLKIMGGRLTDN 144
>At2g28070.1 68415.m03408 ABC transporter family protein
Length = 730
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 279 PGARGIICGGKGTGKSTMLRYLCNRL 304
PG +I G +GKST+LR L RL
Sbjct: 143 PGTMTVIMGPAKSGKSTLLRALAGRL 168
>At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) /
2,3-epoxysqualene--cycloartenol cyclase /
(S)-2,3-epoxysqualene mutase identical to cycloartenol
synthase [SP:P38605 | GI:452446] [PMID:7505443]
Length = 759
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 269 WEQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNRLL 305
W +TYGT G +G++ GK S + C LL
Sbjct: 610 WAVCFTYGTWFGVKGLVAVGKTLKNSPHVAKACEFLL 646
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.136 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,300,230
Number of Sequences: 28952
Number of extensions: 344102
Number of successful extensions: 1103
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 32
length of query: 350
length of database: 12,070,560
effective HSP length: 82
effective length of query: 268
effective length of database: 9,696,496
effective search space: 2598660928
effective search space used: 2598660928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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