Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001849-TA|BGIBMGA001849-PA|IPR001563|Peptidase S10,
serine carboxypeptidase, IPR006195|Aminoacyl-transfer RNA synthetase,
class II, IPR002320|Threonyl-tRNA synthetase, class IIa,
IPR004154|Anticodon-binding, IPR012676|TGS-like, IPR004095|TGS,
IPR012947|Threonyl/alanyl tRNA synthetase, SAD, IPR002314|tRNA
synthetase, class II (G, H, P and S)
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--t... 811 0.0
At2g04842.1 68415.m00498 threonyl-tRNA synthetase, putative / th... 429 e-120
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 307 2e-83
At1g18130.1 68414.m02248 tRNA synthetase-related / tRNA ligase-r... 111 2e-24
At3g62120.2 68416.m06980 tRNA synthetase class II (G, H, P and S... 32 1.5
At3g62120.1 68416.m06979 tRNA synthetase class II (G, H, P and S... 32 1.5
At1g15660.1 68414.m01880 expressed protein similar to CENPCA pro... 31 2.6
At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S... 31 3.5
At5g27330.1 68418.m03263 expressed protein 30 6.0
At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA ligase-r... 29 8.0
At2g46440.1 68415.m05779 cyclic nucleotide-regulated ion channel... 29 8.0
At1g55890.1 68414.m06410 pentatricopeptide (PPR) repeat-containi... 29 8.0
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 29 8.0
At1g10900.1 68414.m01252 phosphatidylinositol-4-phosphate 5-kina... 29 8.0
>At5g26830.1 68418.m03201 threonyl-tRNA synthetase / threonine--tRNA
ligase (THRRS) identical to SP|O04630 Threonyl-tRNA
synthetase, mitochondrial precursor (EC 6.1.1.3)
(Threonine--tRNA ligase) (ThrRS) {Arabidopsis thaliana}
Length = 709
Score = 811 bits (2007), Expect = 0.0
Identities = 385/664 (57%), Positives = 481/664 (72%), Gaps = 16/664 (2%)
Query: 24 IQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGISQGLADA 83
I KRI L+++ +A E + S P + VTLPDG E K W+TTP D+A IS+GLA++
Sbjct: 49 IPKRIKLFEQIQANQLENLKSLPHDPIKVTLPDGNVKEGKKWETTPMDIAAQISKGLANS 108
Query: 84 TIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCYG 143
+I+ V++ LWD++RPLEGDCKLEL ++D+ + WHSSAH+LG+A+E+ YG LC G
Sbjct: 109 ALISAVDDVLWDMNRPLEGDCKLELFKFDSDKGRDTLWHSSAHILGQALEQEYGCQLCIG 168
Query: 144 PPIE--EGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFDYNP 201
P EGFYYD +Y E G+S F +E K AKE QPFER+E+TK+Q LEMF N
Sbjct: 169 PCTTRGEGFYYDGFYGELGLSDNHFPSIEAGAAKAAKEAQPFERIEVTKDQALEMFSENN 228
Query: 202 FKVRILNEKVQTPTTTVYRCGPLIDLCRGPHVRHTGKVKALKVTKNSATYWEGKAEAESL 261
FKV ++N T TVYRCGPL+DLCRGPH+ +T VKA K + S+ YW+G + ESL
Sbjct: 229 FKVELINGLPADMTITVYRCGPLVDLCRGPHIPNTSFVKAFKCLRASSAYWKGDKDRESL 288
Query: 262 QRVYGISFPEPKQLKEWEVIQEEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYN 321
QRVYGIS+P+ KQLK++ EEA K DHR +G++QELFF H+LSPGS FF P G +YN
Sbjct: 289 QRVYGISYPDQKQLKKYLQFLEEAKKYDHRLLGQKQELFFSHQLSPGSYFFLPLGTRVYN 348
Query: 322 TLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENMFSFDVEKETFALKPMNCP 381
L++FIK QY RG+ EV+TPNMYN +LWQTSGH +Y +NMF+F++EK+ F LKPMNCP
Sbjct: 349 RLMDFIKNQYWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTFNIEKQEFGLKPMNCP 408
Query: 382 GHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPQQIEA 441
GHCL+F +R RS+RELP+RLADFGVLHRNE SGAL+GLTRVRRFQQDDAHIFC +Q++
Sbjct: 409 GHCLIFQHRVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQVKG 468
Query: 442 EIVGCLEFLKCVYSTFGFTFQLKLSTRPEKYLGDLETWNQAEKALEDSLNKFGKPWQLNP 501
E+ G LEF+ VY FGFT++LKLSTRPEKYLGDLETW++AE L++++ FGKP LN
Sbjct: 469 EVQGVLEFIDYVYKVFGFTYELKLSTRPEKYLGDLETWDKAEADLKEAIEAFGKPLVLNE 528
Query: 502 GDGAFYGPKIDITIQDALRRSHQCATIQLDFQLPERFNLTYSVVKFWCCVSFGCSETGDK 561
GDGAFYGPKIDIT+ DA+ R QCAT+QLDFQLP RFNL Y+ + K
Sbjct: 529 GDGAFYGPKIDITVSDAMNRKFQCATLQLDFQLPIRFNLEYA-----------AEDEAKK 577
Query: 562 KRPVIIHRAVLGSVERMVAILSESYAGKWPLWLSPRQLRVVPVGPAFDDYAVQVNDKLFA 621
RPV+IHRAVLGSVERM AIL E Y GKWP W+SPRQ V P+ YA +V ++
Sbjct: 578 SRPVMIHRAVLGSVERMFAILLEHYKGKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKD 637
Query: 622 AGFMSEVDTDAGD-TLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTRDNKVHGEMSVE 680
AGF VD D D ++KKVR AQLAQ+NYILVVGE E +G V+VR RDN H S+E
Sbjct: 638 AGFY--VDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVRVRDNAAHSVKSIE 695
Query: 681 ALIE 684
L+E
Sbjct: 696 DLLE 699
>At2g04842.1 68415.m00498 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|P18256
Threonyl-tRNA synthetase 2 (EC 6.1.1.3) (Threonine--tRNA
ligase) (ThrRS) {Bacillus subtilis}; contains Pfam
profiles PF00587: tRNA synthetase class II core domain
(G, H, P, S and T), PF03129: Anticodon binding domain
Length = 650
Score = 429 bits (1058), Expect = e-120
Identities = 230/590 (38%), Positives = 355/590 (60%), Gaps = 24/590 (4%)
Query: 112 DNTDAQAVFWHSSAHMLGEAMERVYGGC-LCYGPPIEEGFYYDMYYPEKGISSTDFNVLE 170
+++D H+ AH++ A+++++ + GP I+ GFYYD + + ++ D ++
Sbjct: 74 ESSDKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIDNGFYYD--FDMEPLTDKDLKRIK 131
Query: 171 GLIKKIAKEKQPFERLELTKEQLLE--MFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLC 228
+ +I P R E+++E+ + M P+K+ IL+ + P T + DLC
Sbjct: 132 KEMDRIISRNLPLLREEVSREEAKKRIMAINEPYKMEILDGIKEEPITVYHIGNEWWDLC 191
Query: 229 RGPHVRHTGKV--KALKVTKNSATYWEGKAEAESLQRVYGISFPEPKQLKEWEVIQEEAA 286
GPHV TGK+ KA+++ + YW G + + LQR+YG ++ +QLK + +EEA
Sbjct: 192 AGPHVETTGKINKKAVELESVAGAYWRGDEKRQMLQRIYGTAWESEEQLKAYLHFKEEAK 251
Query: 287 KRDHRKIGREQELFFFH-ELSPGSCFFQPRGAHIYNTLVNFIKEQYRSRGFHEVVTPNMY 345
+RDHR+IG++ +LF E G F+ P+GA + N + K+ + G+ + TP++
Sbjct: 252 RRDHRRIGQDLDLFSIQDEAGGGLVFWHPKGAIVRNIIEESWKKMHVEHGYDLIYTPHVA 311
Query: 346 NAKLWQTSGHWAHYAENMFS-FDVEKETFALKPMNCPGHCLMFDNRTRSWRELPLRLADF 404
A LW+ SGH Y ENM+ ++E E + L+PMNCP H L++ + +S+R+LP+R+A+
Sbjct: 312 KADLWKISGHLDFYRENMYDQMEIEDELYQLRPMNCPYHILLYQRKRQSYRDLPIRVAEL 371
Query: 405 GVLHRNELSGALTGLTRVRRFQQDDAHIFCAPQQIEAEIVGCLEFLKCVYSTFGFT-FQL 463
G ++R ELSG+L GL RVR F QDDAHIFC QI+ EI G L+ + + S FGF +++
Sbjct: 372 GTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILSRFGFNKYEV 431
Query: 464 KLSTRPEKYLGDLETWNQAEKALEDSLNKFGKPWQLNPGDGAFYGPKIDITIQDALRRSH 523
LSTRPEK +G + W +A AL D+L+ G ++++ G GAFYGPKID+ I+DAL R
Sbjct: 432 NLSTRPEKSVGGDDIWEKATCALRDALDDKGWSYEVDEGGGAFYGPKIDLKIEDALGRKW 491
Query: 524 QCATIQLDFQLPERFNLTYSVVKFWCCVSFGCSETGDKKRPVIIHRAVLGSVERMVAILS 583
QC+TIQ+DF LP+RF++TY DKKRP++IHRAVLGS+ER +L
Sbjct: 492 QCSTIQVDFNLPQRFDITY------------VDTNSDKKRPIMIHRAVLGSLERFFGVLI 539
Query: 584 ESYAGKWPLWLSPRQLRVVPVGPAFDDYAVQVNDKLFAAGFMSEVDTDAGDTLNKKVRNA 643
E YAG +PLWLSP Q+RV+PV ++ +V+ KL A G +E+ G+ L K +RNA
Sbjct: 540 EHYAGDFPLWLSPVQVRVLPVTDNQLEFCKEVSKKLRACGVRAEL--CHGERLPKLIRNA 597
Query: 644 QLAQFNYILVVGEREKNSGTVNVRTRDNKVHGEMSVEALIEHLNNLVREK 693
+ + + VVG +E +GTV VR+R G + V+ LI +N V +
Sbjct: 598 ETQKIPLMAVVGPKEVETGTVTVRSRFGGELGTIPVDDLINKINIAVETR 647
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 307 bits (753), Expect = 2e-83
Identities = 156/293 (53%), Positives = 200/293 (68%), Gaps = 17/293 (5%)
Query: 396 ELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPQQIEAEIVGCLEFLKCVYS 455
+LP+R+A+FGVLHRNE SGAL G+TRVRRF QDDAHIFC Q+E E+ G L+F+ VY
Sbjct: 169 KLPIRMAEFGVLHRNEDSGALGGMTRVRRFVQDDAHIFCRVDQVEEEVKGVLDFIDYVYR 228
Query: 456 TFGFTFQLKLSTRPEKYLGDLETWNQAEKALEDSLNKFGKPWQLNPGDGAFYGPKIDITI 515
FGFT++L LSTRP+ ++GDLETW +AE LE +L+ FGKPW + GDGAFYGPKIDIT+
Sbjct: 229 IFGFTYELTLSTRPKDHIGDLETWAKAENDLEKALDDFGKPWVIKEGDGAFYGPKIDITV 288
Query: 516 QDALRRSHQCATIQLDFQLPERFNLTYSVVKFWCCVSFGCSETGDKKRPVIIHRAVLGSV 575
DA R QCATIQLDFQLP F L Y SE + + PV+IH AVLGS+
Sbjct: 289 SDARNRKFQCATIQLDFQLPACFKLKY------------LSEKNEMEAPVMIHSAVLGSI 336
Query: 576 ERMVAILSESYAGKWPLWLSPRQLRVVPVGPAFDDYAVQVNDKLFAAGFMSEVDTDAGDT 635
ERM AIL E Y G WP WLSPRQ V + YA QV ++ G+ ++D ++ +
Sbjct: 337 ERMFAILLEHYKGIWPFWLSPRQAIVCSLSEDCSSYAKQVQKQINEVGYYVDID-ESDRS 395
Query: 636 LNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTRDN----KVHGEMSVEALIE 684
L KKV +A+ A +NYILVVG++E +G V VR R++ K EMS+E+L++
Sbjct: 396 LRKKVADARDAPYNYILVVGQKEVATGQVTVRLREDPEGRKDLPEMSIESLLD 448
Score = 153 bits (371), Expect = 4e-37
Identities = 71/151 (47%), Positives = 105/151 (69%), Gaps = 4/151 (2%)
Query: 24 IQKRITLWDKYKAQYTEQIASKPDISVVVTL-PDGKTVEAKAWKTTPYDVAKGISQGLAD 82
I KRI L+++ +A+ EQ+ S+P + +TL PDG E + W+T+P D+A IS+GLA
Sbjct: 17 IPKRIRLFEEIQAEQLEQLQSRPHDPIKITLLPDGIEKEGRRWETSPMDIAVQISKGLAK 76
Query: 83 ATIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCY 142
+ +++ VN+ LWD++RPLEGDC LE+ +D+ + FWHSSAH+LG+A+E+ YG LC
Sbjct: 77 SALVSSVNHVLWDMNRPLEGDCSLEIFGFDSDQGRNTFWHSSAHILGQALEQEYGCKLCI 136
Query: 143 GP--PIEEGFYYD-MYYPEKGISSTDFNVLE 170
GP P +EGFYYD +YY E G++ F +E
Sbjct: 137 GPCEPRDEGFYYDSLYYGELGLNDNHFPNIE 167
>At1g18130.1 68414.m02248 tRNA synthetase-related / tRNA
ligase-related similar to SP|O04630 Threonyl-tRNA
synthetase, mitochondrial precursor (EC 6.1.1.3)
(Threonine--tRNA ligase) (ThrRS) {Arabidopsis thaliana};
contains Pfam profile PF03129: Anticodon binding domain
Length = 165
Score = 111 bits (266), Expect = 2e-24
Identities = 69/153 (45%), Positives = 90/153 (58%), Gaps = 16/153 (10%)
Query: 530 LDFQLPERFNLTYSVVKFWCCVSFGCSETGDKKRPVIIHRAVLGSVERMVAILSESYAGK 589
+DF L +RF L YS +ET + R V+IHRAVL SVER+ AIL E Y GK
Sbjct: 17 VDFHLRDRFKLEYSAE----------NETMIE-RSVLIHRAVLSSVERLFAILLEQYKGK 65
Query: 590 WPLWLSPRQLRVVPVGPAFDDYAVQVNDKLFAAGFMSEVDTDAGDTLNKKVRNAQLAQFN 649
+P WLSPRQ V V + YA +V D++ AG+ +VDT ++ KV+ AQ+A +N
Sbjct: 66 FPFWLSPRQAIVCSVSEDYRSYADKVRDQIHEAGYYVDVDT-TDRNVSDKVQEAQVAHYN 124
Query: 650 YILVVGEREKNSGTVNVRTRDNKVHGEMSVEAL 682
YILVVG+ E +G V V RD MS+E L
Sbjct: 125 YILVVGDEEARTGQVTVWLRDEM----MSIETL 153
>At3g62120.2 68416.m06980 tRNA synthetase class II (G, H, P and S)
family protein similar to SP|P07814 Bifunctional
aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
ligase)] {Homo sapiens}; contains Pfam profiles PF00587:
tRNA synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain
Length = 530
Score = 31.9 bits (69), Expect = 1.5
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 392 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAH-IFCAPQQIEAEIVGCLEFL 450
R R+LPL+L + + R E S T R R F + H F + + E++ LE
Sbjct: 168 RGHRDLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKAEADEEVLQILELY 226
Query: 451 KCVYSTFGFTFQLK-LSTRPEKYLGDLET 478
+ +Y + +K + + EK+ G L T
Sbjct: 227 RRIYEEYLAVPVVKGMKSENEKFAGGLYT 255
>At3g62120.1 68416.m06979 tRNA synthetase class II (G, H, P and S)
family protein similar to SP|P07814 Bifunctional
aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
ligase)] {Homo sapiens}; contains Pfam profiles PF00587:
tRNA synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain
Length = 530
Score = 31.9 bits (69), Expect = 1.5
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 392 RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAH-IFCAPQQIEAEIVGCLEFL 450
R R+LPL+L + + R E S T R R F + H F + + E++ LE
Sbjct: 168 RGHRDLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKAEADEEVLQILELY 226
Query: 451 KCVYSTFGFTFQLK-LSTRPEKYLGDLET 478
+ +Y + +K + + EK+ G L T
Sbjct: 227 RRIYEEYLAVPVVKGMKSENEKFAGGLYT 255
>At1g15660.1 68414.m01880 expressed protein similar to CENPCA
protein (GI:11863170) {Zea mays}
Length = 705
Score = 31.1 bits (67), Expect = 2.6
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 623 GFMSEVDTDAGDTLNKKVRNA-QLAQFNYILVVGEREKNSGTVNVRTRDNKVHGEMSVEA 681
G E + + G +V NA ++ ++++ R++ S NV+ R VHGE +
Sbjct: 522 GLHEEENVNTGSASGLQVENAPEVHKYSHKQTNKRRKRGSSDSNVKKRSKTVHGETGGDK 581
Query: 682 LIEHLNNLVREKK 694
++ L + R KK
Sbjct: 582 QMKTLPHESRAKK 594
>At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S)
family protein similar to SP|O23627 Glycyl-tRNA
synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
{Arabidopsis thaliana}; contains Pfam profile PF00587:
tRNA synthetase class II core domain (G, H, P, S and T);
contains non-consensus TA acceptor splice site at intron
4
Length = 463
Score = 30.7 bits (66), Expect = 3.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 375 LKPMNCPGH-CLMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIF 433
L+P G C D + R+LP +A G + RNE+S GL R R F + F
Sbjct: 236 LRPETAQGSFCNFKDYYNLNGRKLPFAVAQVGRVFRNEIS-PRQGLLRTREFTLAEIEHF 294
Query: 434 CAPQ 437
P+
Sbjct: 295 VHPE 298
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 29.9 bits (64), Expect = 6.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 147 EEGFYYDMYYPEKGISSTDFNVLE----GLIKKIAKEKQPFERLELTKEQLLEMFDYNPF 202
E G D + EK T+ L+ GLI+K+ E++ F R+ ++ + FD
Sbjct: 127 EMGVEVDWLFKEKSDRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSE 186
Query: 203 KVRILNEKV 211
++ +L E V
Sbjct: 187 EMNLLKESV 195
>At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA
ligase-related similar to SP|P07814 Bifunctional
aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
ligase)] {Homo sapiens}; contains Pfam profile PF03129:
Anticodon binding domain
Length = 309
Score = 29.5 bits (63), Expect = 8.0
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 590 WPLWLSPRQLRV--VPVGPAFD-----DYAVQVNDKLFAAGFMSEVDTDAGDTLNKKVRN 642
+P ++P Q+ V VP+ A D D V L AG +E D + K +
Sbjct: 99 FPPKVAPVQVVVIHVPIKGAADYQELCDACEAVESTLLGAGIRAEADIRDNYSCGWKYAD 158
Query: 643 AQLAQFNYILVVGEREKNSGTVNVRTRDNKVHGEMSVEALIEHLNNLVRE 692
+L + G R+ + V + TRDN ++ LIE + +L+ +
Sbjct: 159 QELTGVPLRIETGPRDLANDQVRIVTRDNGAKMDVKRGDLIEQVKDLLEK 208
>At2g46440.1 68415.m05779 cyclic nucleotide-regulated ion channel,
putative (CNGC11) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc3) GI:4581201 from
[Arabidopsis thaliana]
Length = 588
Score = 29.5 bits (63), Expect = 8.0
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 1 MKEKKKKTEDTNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTV 60
M+EKK+ TE + E+ PEY+++RI ++ YK + T+ + +++ +LP +
Sbjct: 333 MEEKKRDTEKWMSYREI---PEYLKERIRRFEDYKWRRTK---GTEEEALLRSLPKDLRL 386
Query: 61 EAKAW 65
E K +
Sbjct: 387 ETKRY 391
>At1g55890.1 68414.m06410 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 398
Score = 29.5 bits (63), Expect = 8.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 367 DVEKETFALKPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGA 415
D+ KE FA + ++ G MF+N + + E+P R VL N L A
Sbjct: 105 DMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSA 153
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 157 PEKGISSTDFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFDYNPFKVRILNEK 210
P G + D N++E +IK + + P+ R T + ++ D PF +RI+ ++
Sbjct: 477 PASGKPNLDKNLIEAIIKMLNR-CNPYVRRFRTARERIQTNDEEPFHMRIIADR 529
>At1g10900.1 68414.m01252 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 754
Score = 29.5 bits (63), Expect = 8.0
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 104 CKLELLRWDNTDAQAVFWHSSAHMLGEAMERVYGGCLCYG 143
C+ ++RW+N D FW + G + + GCL YG
Sbjct: 141 CERGVMRWENGDLYDGFW-LNGFRHGSGVYKFADGCLYYG 179
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,712,705
Number of Sequences: 28952
Number of extensions: 780625
Number of successful extensions: 1750
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1727
Number of HSP's gapped (non-prelim): 19
length of query: 703
length of database: 12,070,560
effective HSP length: 86
effective length of query: 617
effective length of database: 9,580,688
effective search space: 5911284496
effective search space used: 5911284496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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