Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001846-TA|BGIBMGA001846-PA|undefined
(379 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27595.1 68417.m03964 protein transport protein-related low s... 33 0.42
At2g38330.1 68415.m04709 MATE efflux family protein low similari... 31 1.3
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 30 2.2
At1g51570.1 68414.m05804 C2 domain-containing protein contains I... 30 2.9
At5g65250.1 68418.m08208 expressed protein 29 3.9
At3g59040.2 68416.m06580 pentatricopeptide (PPR) repeat-containi... 29 3.9
At3g59040.1 68416.m06581 pentatricopeptide (PPR) repeat-containi... 29 3.9
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 29 6.8
At4g11610.1 68417.m01859 C2 domain-containing protein contains I... 28 9.0
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 28 9.0
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 32.7 bits (71), Expect = 0.42
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 164 LNQSMTCTDSETFDAKYKKDKENTTVHSKIKNINSVSVQKIRNVDGDTEIK-ALVMNESD 222
LN+S+ +SE D ++ +K + +K +S K D + E+K A+V NE
Sbjct: 880 LNKSLLVKESELQDVVFENEKLKSKEALSLKTTEELSDVKQTLADKEKELKTAVVENEKL 939
Query: 223 INTLAESIQ--EPILNALKGCLGDIKAL-ACKDNMKSLQTHLLCNTQKLDNIL-VTLACI 278
A S Q E + N + L L + L+ + +K+D +L + + I
Sbjct: 940 KAQAASSFQKIEELKNLKQSLLDKENELEGVFQANEELKAKEASSLKKIDELLHLEQSWI 999
Query: 279 EKKLDAHIEKTTVRNVVKSSRLEELSK 305
+K + ++ VR + R+EELSK
Sbjct: 1000 DKGNEN--QELKVREASAAKRIEELSK 1024
>At2g38330.1 68415.m04709 MATE efflux family protein low similarity
to enhanced disease susceptibility 5 [Arabidopsis
thaliana] GI:16589070; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 521
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 209 GDTEIKALVMNESDINTLAESIQEPILNALKGCLGDIKALACKDNMKSLQT 259
G E+ A+ ++ S N +++ P+LN + + +A+A KD+ S++T
Sbjct: 109 GSAELAAVGVSVSVFNLVSKLFNVPLLNVTTSFVAEEQAIAAKDDNDSIET 159
>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
identical to DNA repair-recombination protein GI:7110148
from [Arabidopsis thaliana]
Length = 1316
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 144 SFNANEFLTPSESNTLDDLQLNQSMTCTDSETFDAKYKKDKENTTVHSKIKNINSVSVQK 203
S+ NE+ + LDD+Q Q + +DS+ + +K+ E ++ K++ Q
Sbjct: 972 SYKINEYHDLKKGERLDDIQEKQRL--SDSQLQSCEARKN-ELAGELNRNKDLMRNQDQL 1028
Query: 204 IRNVDGDTEIKALVMNESDINTLAESIQEPILN 236
RN++ + + ++ ES++E ILN
Sbjct: 1029 RRNIEDNLNYRTTKAKVEELTREIESLEEQILN 1061
>At1g51570.1 68414.m05804 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 776
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 66 KNETVIHDSILEQTVRFAKSLVPAAIPPSRDKSPVYYTIKASKGHRKKSK 115
K++ ++ D ++ + V F + +P +PP +P +Y ++ KG + K +
Sbjct: 107 KDKDLVKDDLIGRVV-FDLNEIPKRVPPDSPLAPQWYRLEDGKGQKVKGE 155
>At5g65250.1 68418.m08208 expressed protein
Length = 300
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 250 CKDNMKSLQTHLLCNTQKLDNILVTLACIEKKLDAHIEKTTVRNVVKSSRLEE 302
CK +S T+L+ +KL+ L + I + L H+EK +R V L+E
Sbjct: 157 CKGARESEGTNLIRRLEKLEKDLKSSTSIVRVLSRHLEKLGIRFRVTRKALKE 209
>At3g59040.2 68416.m06580 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 590
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 266 QKLDNILVTLACIEKKLDAHIEKTTVRN-----VVKSSRLEELSKDVIKXXXXXXXXXXX 320
QK N+L++LA + +L+ E T +RN + + ++ + V
Sbjct: 496 QKAKNVLLSLASTQDELEEAKELTGIRNETATIIARVYGSDDDEEGVEDISSESSDDEDE 555
Query: 321 VNRDNSDVVEFIYNDNVIKGNLGCGEVQDKKM 352
+ D+ D E + D +G+LG G +Q +++
Sbjct: 556 GDDDDDDARETVLYDKPQEGSLGYGSLQTEEL 587
>At3g59040.1 68416.m06581 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 583
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 266 QKLDNILVTLACIEKKLDAHIEKTTVRN-----VVKSSRLEELSKDVIKXXXXXXXXXXX 320
QK N+L++LA + +L+ E T +RN + + ++ + V
Sbjct: 489 QKAKNVLLSLASTQDELEEAKELTGIRNETATIIARVYGSDDDEEGVEDISSESSDDEDE 548
Query: 321 VNRDNSDVVEFIYNDNVIKGNLGCGEVQDKKM 352
+ D+ D E + D +G+LG G +Q +++
Sbjct: 549 GDDDDDDARETVLYDKPQEGSLGYGSLQTEEL 580
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 28.7 bits (61), Expect = 6.8
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 207 VDGDTEIKALVMNESDINTLAESIQEPILNALKGCLGDIKALACKDNMKSLQTHLLCNTQ 266
+DG T IK L +N + + L ILN +KGC + C D++K+L+ +L +
Sbjct: 727 LDG-TSIKELPLNFNILQRLV------ILN-MKGCAKLKEFPDCLDDLKALKELILSDCW 778
Query: 267 KLDNILVTLACIEKKLDAHIEKTTVRNVVKSSRLE 301
KL N I+ ++ TT+ + S L+
Sbjct: 779 KLQNFPAICERIKVLEILRLDTTTITEIPMISSLQ 813
>At4g11610.1 68417.m01859 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1011
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 80 VRFAKSLVPAAIPPSRDKSPVYYTIKASKGHRKKSK 115
VRF + VP +PP +P +Y ++ KG + K +
Sbjct: 359 VRFDINDVPLRVPPDSPLAPQWYRLEDKKGEKIKGE 394
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 223 INTLAESIQEPILNALKGCLGDIKALACKDNMKSLQTHLLCNTQKL 268
I T E++Q+ IL LK C + C N++SLQ +L KL
Sbjct: 786 IPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRSLQELILSGCSKL 831
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,521,351
Number of Sequences: 28952
Number of extensions: 272199
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 10
length of query: 379
length of database: 12,070,560
effective HSP length: 82
effective length of query: 297
effective length of database: 9,696,496
effective search space: 2879859312
effective search space used: 2879859312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 60 (28.3 bits)
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