Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001843-TA|BGIBMGA001843-PA|IPR013026|Tetratricopeptide
region
         (243 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37979| Best HMM Match : Ribosomal_L44 (HMM E-Value=6.7)             29   2.6  
SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_51066| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_50605| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_38090| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_37979| Best HMM Match : Ribosomal_L44 (HMM E-Value=6.7)
          Length = 429

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 205 YDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDKPVA 241
           Y +N  D    GN +    DK  I   N+NE DK VA
Sbjct: 295 YHDNERDKTGIGNYHDNERDKTGIGNYNDNERDKTVA 331


>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1413

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 207 ENTEDAKDEGNKNIEANDKIDIPVMNNNEEDKPVAGE 243
           +++ +     N + E N K+D P   + EE+KP A +
Sbjct: 83  DSSSEPDQAANVDSEVNQKVDAPQAVDKEEEKPQAAD 119


>SB_51066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 202 DELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEED 237
           D+  D++ +D  D  N N   N+KI     NNN  D
Sbjct: 31  DDDDDDDDDDDDDNNNNNNNNNNKIICTCTNNNNND 66


>SB_50605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 206 DENTEDAKDEGNKNIEANDKIDIPVMNNNEED 237
           DEN  D  D+GN N    D   + V++NN++D
Sbjct: 325 DENDADTVDDGN-NDRDGDSDGVSVVDNNKDD 355


>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 927

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 51  SLARLKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAP 97
           +L   K A+  HP    A +N+G  L   +    A+ C  RA+   P
Sbjct: 383 ALLHYKEAIRIHPTFADAFSNMGNLLKEMQDIQGAIQCYSRAIQINP 429


>SB_38090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 181 HINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDKPV 240
           H N +++T     +  LVLG    Y +N  D    GN +    DK  I   ++NE DK  
Sbjct: 310 HDNERDKTGMPSSI--LVLGIGN-YHDNERDKTGIGNYHDNERDKTGIGNYHDNERDKTG 366

Query: 241 AG 242
            G
Sbjct: 367 IG 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,452,704
Number of Sequences: 59808
Number of extensions: 186900
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 22
length of query: 243
length of database: 16,821,457
effective HSP length: 80
effective length of query: 163
effective length of database: 12,036,817
effective search space: 1962001171
effective search space used: 1962001171
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)