Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001836-TA|BGIBMGA001836-PA|IPR002048|Calcium-binding
EF-hand, IPR013032|EGF-like region, IPR001881|EGF-like
calcium-binding, IPR006210|EGF, IPR009030|Growth factor, receptor,
IPR013091|EGF calcium-binding, IPR003367|Thrombospondin type 3 repeat,
IPR008859|Thrombospondin, C-terminal
(804 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g21230.1 68414.m02653 wall-associated kinase, putative simila... 38 0.026
At1g16110.1 68414.m01931 wall-associated kinase, putative contai... 38 0.035
At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identic... 37 0.061
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 36 0.080
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 36 0.11
At1g30900.1 68414.m03780 vacuolar sorting receptor, putative sim... 35 0.19
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim... 34 0.32
At1g16120.1 68414.m01932 wall-associated kinase, putative contai... 34 0.32
At3g05460.1 68416.m00598 sporozoite surface protein-related cont... 33 0.57
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea... 33 0.75
At3g29040.1 68416.m03633 receptor-like protein kinase-related co... 33 0.75
At1g21240.1 68414.m02654 wall-associated kinase, putative simila... 33 0.99
At1g22720.1 68414.m02839 wall-associated kinase, putative contai... 32 1.3
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 31 2.3
At1g79670.2 68414.m09292 wall-associated kinase, putative simila... 31 2.3
At1g79670.1 68414.m09291 wall-associated kinase, putative simila... 31 2.3
At1g16140.1 68414.m01934 wall-associated kinase, putative contai... 31 2.3
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 31 4.0
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15... 30 7.0
At5g18750.1 68418.m02226 DNAJ heat shock N-terminal domain-conta... 29 9.2
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 29 9.2
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 29 9.2
At1g01960.1 68414.m00114 guanine nucleotide exchange family prot... 29 9.2
>At1g21230.1 68414.m02653 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 733
Score = 37.9 bits (84), Expect = 0.026
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 45 QTCRTACSANPCFGGRVPCQDLPDGR-YQCGKCPSGFHGN---GVECYRIS-C--RANTC 97
QTC N C GG C D G+ Y C KC GF GN C I+ C R + C
Sbjct: 233 QTCEQVVGRNIC-GGNSTCFDSTRGKGYNC-KCLQGFDGNPYLSDGCQDINECTTRIHNC 290
Query: 98 FQGVSCEETQYGPKCGSCPTG 118
+CE T C CP+G
Sbjct: 291 SDTSTCENTLGSFHC-QCPSG 310
>At1g16110.1 68414.m01931 wall-associated kinase, putative contains
similarity to wall-associated kinase 2 GI:4826399 from
[Arabidopsis thaliana]
Length = 642
Score = 37.5 bits (83), Expect = 0.035
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 210 TGNERRREHCVDVDECADGRANCPRGRLCVNTP 242
TGN R C+D+DEC +G NC G CVN P
Sbjct: 311 TGNPYLRHGCIDIDEC-EGHHNCGEG-TCVNMP 341
>At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identical
to wall-associated kinase 2 [Arabidopsis thaliana]
GI:4826399; induced by salicylic acid or INA
(PMID:10380805)
Length = 732
Score = 36.7 bits (81), Expect = 0.061
Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 45 QTCRTACSANPCFGGRVPCQDLPDGR-YQCGKCPSGFHGNGV---------ECYRISCRA 94
+TC+ C GG C D G Y C KC GF GN EC IS R
Sbjct: 232 KTCKQVEYRGVC-GGNSTCFDSTGGTGYNC-KCLEGFEGNPYLPNGCQDINEC--ISSRH 287
Query: 95 NTCFQGVSCEETQYGPKCGSCPTGYVGD 122
N C + +CE T+ C +CP+GY D
Sbjct: 288 N-CSEHSTCENTKGSFNC-NCPSGYRKD 313
Score = 29.9 bits (64), Expect = 7.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 211 GNERRREHCVDVDECADGRANCPRGRLCVNT 241
GN C D++EC R NC C NT
Sbjct: 268 GNPYLPNGCQDINECISSRHNCSEHSTCENT 298
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 36.3 bits (80), Expect = 0.080
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 68 DGRYQCGKC-PSGFHGNGVECYRISCRANTCFQGVSCEETQYGPKCGSCPTGYVGDGRQC 126
DG C P+ N +C+ R F S ET C CP G++GDG +C
Sbjct: 456 DGYTSCKPYGPARCSMNNGDCWS-ETRKGLTFSSCSDSETS---GC-RCPLGFLGDGLKC 510
Query: 127 QHVCDAQKPCGRERRCMPKSTSPYYECEGCPSGYQWNGYTC 167
+ + + C KS +C+GC W GY C
Sbjct: 511 EDIDE----------CKEKSAC---KCDGCKCKNNWGGYEC 538
Score = 31.5 bits (68), Expect = 2.3
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 102 SCEETQYGPKCGSCPT----GYVGDG-RQCQHVCDAQ-----KPCGRE-RRCMPKSTSPY 150
+C++T G C CP Y GDG C+ A+ C E R+ + S+
Sbjct: 433 ACKDTFRGRVC-ECPVVDGVQYKGDGYTSCKPYGPARCSMNNGDCWSETRKGLTFSSCSD 491
Query: 151 YECEGC--PSGYQWNGYTCVDMDECDLIRPCD-DLVSCRN 187
E GC P G+ +G C D+DEC C D C+N
Sbjct: 492 SETSGCRCPLGFLGDGLKCEDIDECKEKSACKCDGCKCKN 531
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 35.9 bits (79), Expect = 0.11
Identities = 40/122 (32%), Positives = 50/122 (40%), Gaps = 21/122 (17%)
Query: 24 CVDTDQGFRCERCP---GSQ-TSDGQTCRTACSANPCFGGRVPC-QDLPDGRY--QCG-- 74
C DT +G CE CP G Q DG T T C C D +G C
Sbjct: 436 CQDTFRGRLCE-CPVVKGVQYKGDGYTSCTPYGPARCTMNNGGCWSDTRNGLTFSACSDS 494
Query: 75 -----KCPSGFHGNGVECYRIS-CRANTCFQ--GVSCEETQYGPKCGSCPTG--YVGDGR 124
KCP GF G+G+ C I+ C+ + Q G C+ + G KC SC Y+ D
Sbjct: 495 VSTGCKCPEGFQGDGLTCEDINECKERSVCQCSGCRCKNSWGGYKC-SCSGDRLYINDQD 553
Query: 125 QC 126
C
Sbjct: 554 TC 555
Score = 31.9 bits (69), Expect = 1.7
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 13/53 (24%)
Query: 115 CPTGYVGDGRQCQHVCDAQKPCGRERRCMPKSTSPYYECEGCPSGYQWNGYTC 167
CP G+ GDG C+ + C +S +C GC W GY C
Sbjct: 501 CPEGFQGDGLTCEDI----------NECKERSVC---QCSGCRCKNSWGGYKC 540
Score = 31.5 bits (68), Expect = 2.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 156 CPSGYQWNGYTCVDMDEC 173
CP G+Q +G TC D++EC
Sbjct: 501 CPEGFQGDGLTCEDINEC 518
>At1g30900.1 68414.m03780 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 631
Score = 35.1 bits (77), Expect = 0.19
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 102 SCEETQYGPKCGSCPT----GYVGDG-RQCQHVCDA-----QKPCGRE-RRCMPKSTSPY 150
+C++T G C CP Y GDG C+ A Q C E ++ + S
Sbjct: 434 ACKDTFRGRVC-ECPVVNGVQYKGDGYTSCEPYGPARCSINQGGCWSETKKGLTFSACSN 492
Query: 151 YECEGC--PSGYQWNGYTCVDMDECDLIRPCD-DLVSCRNE 188
E GC P G++ +G C D+DEC C D +C+N+
Sbjct: 493 LETSGCRCPPGFKGDGLKCEDIDECKEQSACQCDGCNCKNK 533
Score = 33.5 bits (73), Expect = 0.57
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 13/53 (24%)
Query: 115 CPTGYVGDGRQCQHVCDAQKPCGRERRCMPKSTSPYYECEGCPSGYQWNGYTC 167
CP G+ GDG +C+ + + C + C +C+GC +W G+ C
Sbjct: 500 CPPGFKGDGLKCEDIDE----CKEQSAC---------QCDGCNCKNKWGGFEC 539
Score = 29.9 bits (64), Expect = 7.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 75 KCPSGFHGNGVECYRI-SCRANTCFQ--GVSCEETQYGPKC 112
+CP GF G+G++C I C+ + Q G +C+ G +C
Sbjct: 499 RCPPGFKGDGLKCEDIDECKEQSACQCDGCNCKNKWGGFEC 539
>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
similar to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737218
Length = 625
Score = 34.3 bits (75), Expect = 0.32
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 115 CPTGYVGDG-RQCQHV--CDAQKPCGRERRCMPKSTSPYYEC 153
CP G++GDG ++C+ V C+ + C + R C K+T YEC
Sbjct: 502 CPPGFIGDGLKECKDVNECEEKTAC-QCRDCKCKNTWGSYEC 542
>At1g16120.1 68414.m01932 wall-associated kinase, putative contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 730
Score = 34.3 bits (75), Expect = 0.32
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 210 TGNERRREHCVDVDECADGRANCPRGRLCVNTP 242
TGN R CVD D C +G NC CVN P
Sbjct: 304 TGNPYLRGGCVDTDSC-EGNHNCGEDAHCVNMP 335
>At3g05460.1 68416.m00598 sporozoite surface protein-related
contains weak similarity to Sporozoite surface protein 2
precursor (Swiss-Prot:Q01443) [Plasmodium berghei
yoelii]
Length = 152
Score = 33.5 bits (73), Expect = 0.57
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 233 PRGRLCVNTPQYPSNPVSSLQGSYICVPCGGHYYVNTTRPC--FDPDSLVKRCDP 285
PR C++ P P NP ++ I P G Y++ PC DP +VK C+P
Sbjct: 53 PRDPKCIDKPCNPENPNCRMEQGAI-KPNRGSGYLHDDPPCNPRDPKCIVKPCNP 106
>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
(GP:1737218) [Arabidopsis thaliana]
Length = 623
Score = 33.1 bits (72), Expect = 0.75
Identities = 37/113 (32%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 24 CVDTDQGFRCERCPGSQ----TSDGQT-CRTA----CSANP--CF----GGRVPCQDLPD 68
C DT +G CE CP Q DG T C+ + C N C+ GG + D
Sbjct: 433 CRDTFRGRLCE-CPTVQGVKFVGDGYTHCKASGALHCGINNGGCWRESRGGFTYSACVDD 491
Query: 69 GRYQCGKCPSGFHGNGVE-CYRI-SCRANTCFQGVSCE-ETQYGPKCGSCPTG 118
C KCP GF G+GV+ C + C+ T Q C+ + +G SC G
Sbjct: 492 HSKDC-KCPLGFKGDGVKNCEDVDECKEKTVCQCPECKCKNTWGSYECSCSNG 543
>At3g29040.1 68416.m03633 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069
Length = 248
Score = 33.1 bits (72), Expect = 0.75
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 81 HGNGVECYRISCRANTCFQGVSCEETQYGPKCGSC-PTGYVGDGRQCQ 127
+ + VE Y +S N F + C YG KC SC T + G +C+
Sbjct: 61 YNSNVEAYEVSKDPNIVFVLLQCRGDSYGSKCHSCLHTAFSGLRERCR 108
>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 741
Score = 32.7 bits (71), Expect = 0.99
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 211 GNERRREHCVDVDECADGRANCPRGRLCVNTPQYPSNPVSSLQGSYICVPCGGHYYVNTT 270
GN R E C D+DEC NC + C N G + C C Y +N++
Sbjct: 283 GNPYRSEGCKDIDECISDTHNCSDPKTCRNR-----------DGGFDC-KCPSGYDLNSS 330
Query: 271 RPCFDPD 277
C P+
Sbjct: 331 MSCTRPE 337
Score = 29.9 bits (64), Expect = 7.0
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 294 VCGFGQKCVCNTGWTGNGTVCGLDRDLDGHPDEQLPCNE-PRCKKD--NCPD 342
+CG C +T T NG +C + DG+P C + C D NC D
Sbjct: 257 ICGKNSSCYNST--TRNGYICKCNEGYDGNPYRSEGCKDIDECISDTHNCSD 306
>At1g22720.1 68414.m02839 wall-associated kinase, putative contains
similarity to serine/threonine kinase gb|Y12531 from
Brassica oleracea
Length = 219
Score = 32.3 bits (70), Expect = 1.3
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 210 TGNERRREHCVDVDEC---ADGRAN-CPRGRLCVNTPQ 243
TGN C D+DEC A+GR N C G C N+P+
Sbjct: 10 TGNPYVLNGCKDIDECKELANGRPNICTDGGTCQNSPE 47
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 31.5 bits (68), Expect = 2.3
Identities = 39/144 (27%), Positives = 52/144 (36%), Gaps = 28/144 (19%)
Query: 20 VGERCVDTDQGFRCER-CPGSQTSDGQTCRTACSANPCFGGRVPCQDLPDGRYQC--GKC 76
V ++ V Q CER C + CR C C G PC ++ + +C KC
Sbjct: 387 VTKKQVPCHQELACERKCQRVRDCARHACRRRC----CDGECPPCSEICGKKLRCRNHKC 442
Query: 77 PSGFH-GNGVEC---YRISCRANTCFQGVSC--EETQYGPKCGS-------CPTG----- 118
S H G C ISC V C E Q P+C C G
Sbjct: 443 QSPCHQGPCAPCPIMVTISCACGETHFEVPCGTETNQKPPRCRKLCHITPLCRHGQNQKP 502
Query: 119 ---YVGDGRQCQHVCDAQKPCGRE 139
+ G C+ +CD + PCG +
Sbjct: 503 HKCHYGACPPCRLLCDEEYPCGHK 526
>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
to wall-associated kinase 4 GI:3355308 from [Arabidopsis
thaliana]; isoform contains non-consensus AT-acceptor
splice site.
Length = 714
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 211 GNERRREHCVDVDECADGRANCPRGRL-CVNTP 242
GN C+D+DEC +G+ G L CVN P
Sbjct: 262 GNPYLPGGCIDIDECEEGKGLSSCGELTCVNVP 294
>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
to wall-associated kinase 4 GI:3355308 from [Arabidopsis
thaliana]; isoform contains non-consensus AT-acceptor
splice site.
Length = 751
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 211 GNERRREHCVDVDECADGRANCPRGRL-CVNTP 242
GN C+D+DEC +G+ G L CVN P
Sbjct: 299 GNPYLPGGCIDIDECEEGKGLSSCGELTCVNVP 331
>At1g16140.1 68414.m01934 wall-associated kinase, putative contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 690
Score = 31.5 bits (68), Expect = 2.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 146 STSPYYECEGCPSGYQWNGYT---CVDMDECDLIRPCDD 181
S Y C C SGY+ N Y C+D+DEC++ C +
Sbjct: 265 SRMSYRSCY-CGSGYRGNPYIRGGCIDIDECEVPNKCGE 302
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding
transcription factor (CCAAT-binding factor) (CBF)
(Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
musculus]
Length = 1056
Score = 30.7 bits (66), Expect = 4.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 537 IVPNRDQKDSDNDGIGDACDNDIDGD 562
++ + D + D+DG GD D+D DGD
Sbjct: 972 LIDDEDDNNVDDDGTGDGGDDDSDGD 997
>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 84
Score = 29.9 bits (64), Expect = 7.0
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 42 SDGQTCRTACSA-NPCFGG---RVPCQDLPDGRYQCGKCPSGFHGNGVECYRISCRANTC 97
S +C C +PC GG R+ + G + CP G H C + T
Sbjct: 8 SASASCNDRCGCPSPCPGGESCRLMMSEASGGDQEHNTCPCGEHCGCNPCNCPKTQTQTS 67
Query: 98 FQGVSCEETQYGPKCGSC 115
+G +C E G C +C
Sbjct: 68 AKGCTCGE---GCTCATC 82
>At5g18750.1 68418.m02226 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 884
Score = 29.5 bits (63), Expect = 9.2
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 704 GKILRNALWNTNSTPDQVTLLWKDPRNVGWREQTAYRWKLLHRPKIGLIRLKMYENNRLV 763
GK +W+ NS D + + + + WR + L PK L + + + R+
Sbjct: 674 GKFAPGQIWSLNSKEDGLPKCYAKIQQIVWRPVFKLQINRL-EPKSLLENVIQWHDKRMP 732
Query: 764 ADSGNTYDFTLKGGR 778
GN FTLK GR
Sbjct: 733 VSCGN---FTLKEGR 744
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 29.5 bits (63), Expect = 9.2
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 111 KCGSCPTGYVGDGRQCQHVCDAQKPCGRERRCMPKSTSPYYECEGCPSGYQWNGYTCVDM 170
KC CP G+ GDG + C+ C ++ C +C C W Y C
Sbjct: 500 KC-ECPPGFKGDGTK---KCEDINECKEKKAC---------QCPECSCKNTWGSYECSCS 546
Query: 171 DECDLIRPCDDLVS 184
+ IR D +S
Sbjct: 547 GDLLYIRDHDTCIS 560
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 29.5 bits (63), Expect = 9.2
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 111 KCGSCPTGYVGDGRQCQHVCDAQKPCGRERRCMPKSTSPYYECEGCPSGYQWNGYTCVDM 170
KC CP G+ GDG + C+ C ++ C +C C W Y C
Sbjct: 500 KC-ECPPGFKGDGTK---KCEDINECKEKKAC---------QCPECSCKNTWGSYECSCS 546
Query: 171 DECDLIRPCDDLVS 184
+ IR D +S
Sbjct: 547 GDLLYIRDHDTCIS 560
>At1g01960.1 68414.m00114 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor [Homo
sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1750
Score = 29.5 bits (63), Expect = 9.2
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 729 RNVGWREQTAYRWKLLHRPKIGLIRLKMYENNRLVAD--SGNTYDFTLKGGRLGVFCFSQ 786
+N WR+ + KL H K + RL+ EN+ VAD SG++ L G + ++
Sbjct: 23 KNASWRKHS----KLAHECKSVIERLRSPENSSPVADSESGSSIPGPLHDGGAAEYSLAE 78
Query: 787 EMIIWSNLL 795
II S L+
Sbjct: 79 SEIILSPLI 87
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.139 0.470
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,832,770
Number of Sequences: 28952
Number of extensions: 938942
Number of successful extensions: 1842
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1811
Number of HSP's gapped (non-prelim): 54
length of query: 804
length of database: 12,070,560
effective HSP length: 87
effective length of query: 717
effective length of database: 9,551,736
effective search space: 6848594712
effective search space used: 6848594712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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