Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001835-TA|BGIBMGA001835-PA|IPR001159|Double-stranded RNA
binding, IPR000999|Ribonuclease III
         (152 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58124| Best HMM Match : Ribonuclease_3 (HMM E-Value=7e-28)          58   2e-09
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   4e-07
SB_57035| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.72 
SB_57869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_49823| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_58124| Best HMM Match : Ribonuclease_3 (HMM E-Value=7e-28)
          Length = 602

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 15  EQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLM 56
           +  E +E PK LGD+FESVAGAIFLDSGM L   W+ Y R++
Sbjct: 556 DDEEGIEAPKVLGDIFESVAGAIFLDSGMDLVLTWRVYYRML 597


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 13   EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
            E+E+ E     + LGDLFE++ GA+++D G      W     L+   +E +S   P SP 
Sbjct: 1938 EIEEKE-TRPDQVLGDLFEALLGALYVDCGRDEELAWSVIYPLLTPIIEHYSVHLPISPT 1996

Query: 73   RELLEAEPDTAKFGKPERLADGRRVRVCVEXXXXXXXXXXXXNYRIAKGTAARCALRHLR 132
            R+L+E  P  A F    +   G      V             N +IA+ TAA+ AL  ++
Sbjct: 1997 RQLVEMMPGAATFTCLSQNVIGHHACELV-VKGYGRFMGTGRNAQIARSTAAQHALARIK 2055


>SB_57035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 11 EDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMG 57
          E+ ME   +++ P+A  D+F+ +   + L  G+    V +  GR+ G
Sbjct: 48 EESMESYNELDEPQATYDMFDRITSCMSLHHGVRAPQVVRCVGRVRG 94


>SB_57869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 12  DEMEQAEDVEVPK--ALGDLFESVAGAIFLDSGMS 44
           D +++ + VEV K   + D F ++ GAI+LD G S
Sbjct: 192 DSLKKEKHVEVTKEDVISDAFLALIGAIYLDQGSS 226


>SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 30  FESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLEAEPDTAKFGKPE 89
           F     A ++  G+ + AV          +    S   P+  + + L  +P T +FGKPE
Sbjct: 167 FTKAIAADYITKGIRVNAVCPGTIYTESLQYRIDSTPDPQKALADFLARQP-TGRFGKPE 225

Query: 90  RLAD 93
            +A+
Sbjct: 226 EVAN 229


>SB_49823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 42  GMSLGAVWKSYGRLMGRELE---AFSAAAPKSPVRELLEAEPDTA 83
           G+SLG++ K   RL   +LE   A  A   K PV    E    TA
Sbjct: 109 GVSLGSLGKKLSRLENEQLERRQALHAEGRKPPVNRAKERRSSTA 153


>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 68  PKSPVRELLEAEPDTAKFGKPE 89
           P+SPV ++ E EP  A F  PE
Sbjct: 412 PRSPVEKVKEEEPAKASFRPPE 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,055,298
Number of Sequences: 59808
Number of extensions: 170713
Number of successful extensions: 379
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 7
length of query: 152
length of database: 16,821,457
effective HSP length: 76
effective length of query: 76
effective length of database: 12,276,049
effective search space: 932979724
effective search space used: 932979724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)