GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001833-TA|BGIBMGA001833-PA|IPR003100|Argonaute and Dicer
protein, PAZ, IPR000999|Ribonuclease III
         (1126 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)             136   7e-32
SB_58124| Best HMM Match : Ribonuclease_3 (HMM E-Value=7e-28)          72   2e-12
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)    43   0.001
SB_8173| Best HMM Match : GreA_GreB_N (HMM E-Value=0.27)               32   3.0  
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)                 31   4.0  
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)                  31   4.0  
SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)                     31   5.2  
SB_44757| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   6.9  
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)           31   6.9  
SB_666| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   6.9  
SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   9.1  

>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score =  136 bits (330), Expect = 7e-32
 Identities = 76/175 (43%), Positives = 112/175 (64%), Gaps = 9/175 (5%)

Query: 287  DNPLLKPGEVFVFDPDKYKEAVVTPWYRNQDQPQYFLVAEICWRLSPDSVFPSASHA-TF 345
            D+P   P  +   D + ++++VVT  Y    + +Y+ VA+I +  SP S FPS S A TF
Sbjct: 1178 DDPCDPPPPI-TSDFEVFRDSVVTTAYA-PSRLRYY-VADIRYDESPTSPFPSPSVAPTF 1234

Query: 346  RDYYQNKYGVTITQSKQPLLDVDHTSARLNLLTPRYVNRKGVALPVSSERTRRAKRERLD 405
             DYY+++YGV +++  QPLLDVDH S+RLN L  RY   KG  L +  E+++R++R R+ 
Sbjct: 1235 GDYYKDRYGVDLSRD-QPLLDVDHVSSRLNFLRSRYKTSKGKDLALPDEKSKRSQRSRVS 1293

Query: 406  QKQLLLPELCRAHPFAAPLWAATVALPCALYRINALLIAEEIRRSVAVEVGLGIP 460
                L+PE+C  HP    LW     +P  LYR++ALLIAEE+R+ +AVE G+G+P
Sbjct: 1294 ----LVPEMCSIHPIPGSLWRDITNMPSILYRVDALLIAEELRQKLAVEAGIGMP 1344



 Score =  129 bits (312), Expect = 1e-29
 Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 24/223 (10%)

Query: 862  PGPSPSVILQALTMSNANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSK 921
            PGPS ++IL+ALT ++AND I+ ERLE  GD+F+K+AI+  LY   PNV+EG+LS +R  
Sbjct: 1466 PGPSSTLILRALTTTSANDIIDHERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGL 1525

Query: 922  QVSNLNLYRLGRNKQLGSRMIASKFEPHDNWLPP---------CHE-----PPPTLQPKL 967
            +VSN  L+ LGR++ L   ++   FEP  +W+PP          HE     P   +   L
Sbjct: 1526 RVSNQQLFYLGRSRGLAPLILTKPFEPVGSWVPPGFSSSSMRNVHETLDVSPQHGVNDVL 1585

Query: 968  NLNGQDKKQNVD----SSPENVGCFIPYNLITQHS---IPDKSIADCVEALIGAYLLECG 1020
            N++ +D   + +    S  E  G   P  L+  H+   I DK++AD +EALIGA L+  G
Sbjct: 1586 NIDDEDSLDHSEIQDISGNECRGNVEPM-LLPPHTFTVISDKTVADTIEALIGACLMSSG 1644

Query: 1021 PRGALLFMSWLGIAV--LPRHLAALPHTHSTSEQRETSAEPPP 1061
               AL  M WL + V   P    + P T S+SE +  S    P
Sbjct: 1645 TNAALRLMRWLDMDVSSCPDSKLSNPSTESSSEDKARSIYQEP 1687



 Score = 36.7 bits (81), Expect = 0.11
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 868  VILQALTMSN---ANDGIN--LERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQ 922
            ++LQALT ++   A   +N   E+LE +GD+ L + +T ++    P +  G ++ +RS  
Sbjct: 1840 ILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQRFPRLSPGAITDLRSAV 1899

Query: 923  VSNLNL 928
            V+N +L
Sbjct: 1900 VNNYSL 1905


>SB_58124| Best HMM Match : Ribonuclease_3 (HMM E-Value=7e-28)
          Length = 602

 Score = 72.1 bits (169), Expect = 2e-12
 Identities = 32/68 (47%), Positives = 48/68 (70%)

Query: 864 PSPSVILQALTMSNANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQV 923
           P   ++LQALT  +A D  +LERLE +GD+FLK A++ +LYC + +  EGKL+  ++ Q+
Sbjct: 313 PDSELLLQALTTKSAGDAFDLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTSQL 372

Query: 924 SNLNLYRL 931
           SN  LYR+
Sbjct: 373 SNRALYRV 380


>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
          Length = 618

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 885 ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRLGRNKQL 937
           +RLE +GDS L+F ++ +LY   P+ HEG L+ +RS  V++ +   + R   L
Sbjct: 478 QRLEFLGDSVLQFVVSVFLYQHFPDHHEGHLTLLRSSLVNSRSQAEIARQLNL 530


>SB_8173| Best HMM Match : GreA_GreB_N (HMM E-Value=0.27)
          Length = 488

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 1046 THSTSEQRETSAEPPPARRRVGSLPPYRDRQGNWVQQVYGELKAPPSP 1093
            T  T+E + T+  PPP   +   LPP R++QG+ + +V G+L A PSP
Sbjct: 382  TIDTNESQVTT--PPPTTNQPSVLPP-REKQGSPL-RVQGQLIAVPSP 425


>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
          Length = 1334

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 12/207 (5%)

Query: 649 VRIEYRTAHEAEAVDVGGNDKVNPAPAADPXXXXXXXXXXX--XXXXXGLAPPEHIERFR 706
           VRIE  T+ + E VD+ G+  VNP+P                      GL   +  + + 
Sbjct: 160 VRIE-NTSDDEEEVDIDGDIDVNPSPECSTFTHLISVDGAAFPRSVNGGLVKEKEEDSYN 218

Query: 707 SSVAAHKEHITRNCLIQRDEPVGEVLPPLITQKTTLNT-PNVEAKVLEMFPYGTRELRHA 765
           + ++  +E  T +  +      G    P+    T LN+  + ++K   +      E+  A
Sbjct: 219 NEISLSEEDPTDD--LSSQCLTGLSAMPISRADTQLNSIQSDQSKAQSLTMTSATEINCA 276

Query: 766 DDGRLTLQSVERNKRFILNHLKTNLKPEEIKSLFCFSMKDIDIDAPDYVDEKIT-NIGFD 824
           DD  LT  S E++    L    T+ +  +   L   S+ + D     + +EKI  NI   
Sbjct: 277 DD-HLTSTSCEQSDANHLALTSTSCEQSDANHLALLSLSN-DETLQCFDNEKINENISL- 333

Query: 825 DGDKYNTGNEFKPYYEDDKGGQKREFD 851
           + D + + N      E     QKRE D
Sbjct: 334 NVDSHESTNLLTEKVETST--QKRERD 358


>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
          Length = 827

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 699 PEHIERFRSSVAAHKEHITRNCLIQRDEPVGEVLPPLITQKTTLNTPNVEAKVLEMFPYG 758
           PE  E+    + + K+   ++ L+  D+P  E+ P   + +T + T   E   + + P  
Sbjct: 373 PESPEKVSDPIQSSKQSFQKDDLLLEDKPKEELNPEGYSSQTNIPTKPEEGVYMPLIPPK 432

Query: 759 TRELRHADDGR 769
           TR+L   DD +
Sbjct: 433 TRKL-STDDSK 442


>SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)
          Length = 629

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 19/57 (33%), Positives = 29/57 (50%)

Query: 549 SNEMASSIPEDTDFDEYLEPLPPNLTFCTSASGSASWCDPIQKPKSEFNPTRSYSVA 605
           +N+++  + +DTDF   L+    +LTF  S SG +S    + K KS    T  Y  A
Sbjct: 382 ANQLSEEMNKDTDFAVTLQIPTSSLTFGKSRSGYSSEVAIVVKHKSRGTQTLLYDTA 438


>SB_44757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 18/49 (36%), Positives = 23/49 (46%)

Query: 853 DFQPVLEGHPGPSPSVILQALTMSNANDGINLERLETVGDSFLKFAITA 901
           D   +L GH  P P VI + L   N    +N E L +V  S L   +TA
Sbjct: 70  DLVDILSGHLHPKPLVIAERLHFHNRVVKLNWEHLFSVSSSDLVHELTA 118


>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
          Length = 1336

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 535 EKEDAENGFEIGT--WSNEMASSIPEDTDFDEYLEPLPP 571
           E+ED   GF +    + + +A+  P+ T FDE  E LPP
Sbjct: 103 EEEDGNEGFCLPPDFFYDSLANDSPQPTSFDELFEGLPP 141


>SB_666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 908 PNVHEGKLSHMRSKQVS-NLNLYRLGRNKQLGSRMIASKFEPHD 950
           PNV +  L+  R K++S N   ++LG  K+    +IA   +PHD
Sbjct: 96  PNVRQQHLNGFRRKRISLNSEDFKLGNQKRSVYSLIAYNAKPHD 139


>SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 307 AVVTPWYRNQDQPQYFLVAEICWRLSPDSVFP--SASHATFRDYYQNKYGVTITQSKQPL 364
           +VV   Y N+     + V +I W   P S F   +    TF +YY+  Y + I    QP+
Sbjct: 20  SVVLTTYNNKT----YRVDDIDWNKRPTSTFTFHNGEQMTFVEYYKKSYEIEIRDLDQPM 75

Query: 365 L 365
           +
Sbjct: 76  I 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,178,522
Number of Sequences: 59808
Number of extensions: 1402194
Number of successful extensions: 3279
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3263
Number of HSP's gapped (non-prelim): 19
length of query: 1126
length of database: 16,821,457
effective HSP length: 90
effective length of query: 1036
effective length of database: 11,438,737
effective search space: 11850531532
effective search space used: 11850531532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)