Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001832-TA|BGIBMGA001832-PA|IPR001650|Helicase,
C-terminal, IPR005034|Protein of unknown function DUF283
         (1139 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       28   0.32 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   3.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   3.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   3.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   6.8  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           24   6.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   6.8  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    24   6.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   6.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   6.8  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   9.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   9.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 0.32
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 795 VQNEPTQQQEDEADTFTGLIKPYA-PNDNKKHVLRMEPSIDHM-KDSKKETKLSENYVTV 852
           V  +  ++++D   T T    P   P+DN+ H+ R+E S++     S K ++ S + ++ 
Sbjct: 115 VSPKSEKEEKDMETTLTPCASPNRKPDDNQDHLRRLEMSLEKSGLFSSKTSEHSVDELSG 174

Query: 853 SDVSDVNELNDK--RNVKEKDDKKIEWTKTEDVDVIS 887
              +D  E +++  R  K     KI+  K +  D ++
Sbjct: 175 KSDNDAEEYDEQSLRVPKVNSHGKIKTFKCKQCDFVA 211


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 180 TDSPNEITCDSDIGSL 195
           T  PNE+TCD + G +
Sbjct: 907 TKDPNEVTCDEEEGHI 922


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 143 DNSEDSNKRDSCNLKDMLIEEDKHDNERSEKDMRHSQTDSPNEI 186
           D    S  +   N   +++ E + +   S+KD + SQ D  N +
Sbjct: 417 DKKPYSTYKFPTNFDALIVNEMRSEKPESKKDKKGSQVDHKNNL 460


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 143 DNSEDSNKRDSCNLKDMLIEEDKHDNERSEKDMRHSQTDSPNEI 186
           D    S  +   N   +++ E + +   S+KD + SQ D  N +
Sbjct: 309 DKKPYSTYKFPTNFDALIVNEMRSEKPESKKDKKGSQVDHKNNL 352


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 821 DNKKHVLRMEPSIDHMKDSKKETKLS 846
           D+  H  R  P+IDH   S  +T LS
Sbjct: 2   DSSDHFDRESPNIDHNSCSSDDTVLS 27


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)

Query: 879 KTEDVDVISNKSESDLCQ 896
           K+EDV VIS K+E++L Q
Sbjct: 216 KSEDVPVISLKNENELPQ 233


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 500 ADLCGSTENVKNGDNGGRLNNTSPNETDN 528
           A LCGS + + +  +    NN +P+ T+N
Sbjct: 109 AGLCGSHDEIPDISSTRGNNNNTPSATNN 137


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 376 LCTTVFVRIRCYADLVFGKLESDWDRIRAFSTPKILRLAEILERFRP 422
           LC T+  ++       + KLE+ +D +  + T ++    ++++  RP
Sbjct: 171 LCDTILKKVDDILSQAY-KLEASFDDLATYETDEVQIFIDVVQHNRP 216


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 500 ADLCGSTENVKNGDNGGRLNNTSPNETDN 528
           A LCGS + + +  +    NN +P+ T+N
Sbjct: 57  AGLCGSHDEIPDISSTRGNNNNTPSATNN 85


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 500 ADLCGSTENVKNGDNGGRLNNTSPNETDN 528
           A LCGS + + +  +    NN +P+ T+N
Sbjct: 240 AGLCGSHDEIPDISSTRGNNNNTPSATNN 268


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 4/27 (14%)

Query: 501 DLCGSTENVKNGDNGGRLNNTSPNETD 527
           +L GST    NGD G R N  S + TD
Sbjct: 43  ELTGST----NGDGGARSNADSTSHTD 65


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 4/27 (14%)

Query: 501 DLCGSTENVKNGDNGGRLNNTSPNETD 527
           +L GST    NGD G R N  S + TD
Sbjct: 199 ELTGST----NGDGGARSNADSTSHTD 221


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,605
Number of Sequences: 317
Number of extensions: 11494
Number of successful extensions: 34
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 20
length of query: 1139
length of database: 114,650
effective HSP length: 64
effective length of query: 1075
effective length of database: 94,362
effective search space: 101439150
effective search space used: 101439150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)