Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001831-TA|BGIBMGA001831-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
         (142 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   4.2  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   5.6  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   5.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   9.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   9.8  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 80  EEEVASWAEDIG 91
           E  VA W EDIG
Sbjct: 191 EHRVAYWREDIG 202


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
          activity of ets genes protein.
          Length = 108

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 77 KWTEEEVASW 86
          +WT E VA W
Sbjct: 38 QWTREHVAQW 47


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
          modulator protein.
          Length = 108

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 77 KWTEEEVASW 86
          +WT E VA W
Sbjct: 38 QWTREHVAQW 47


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 37  YPIEEPYQKNKKLKPCQISPL 57
           YP  EP   N + +  Q++PL
Sbjct: 374 YPSYEPTYDNSRREGKQLNPL 394


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 41  EPYQKNKKLKPCQISPLTLYELAANVVDA 69
           +PY  N K+    +SP +L   +A+  D+
Sbjct: 145 DPYSPNGKIGREDLSPSSLNGYSADSCDS 173


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.140    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,211
Number of Sequences: 317
Number of extensions: 1703
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 142
length of database: 114,650
effective HSP length: 51
effective length of query: 91
effective length of database: 98,483
effective search space:  8961953
effective search space used:  8961953
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)