Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001830-TA|BGIBMGA001830-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(183 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15080.1 68416.m01907 exonuclease family protein contains exo... 85 2e-17
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 73 2e-13
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 73 2e-13
At3g50100.1 68416.m05477 exonuclease family protein contains exo... 64 7e-11
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 56 2e-08
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 54 6e-08
At5g25800.1 68418.m03062 exonuclease family protein contains exo... 48 3e-06
At5g05540.1 68418.m00601 exonuclease family protein contains exo... 48 3e-06
At5g67240.1 68418.m08475 exonuclease family protein contains exo... 34 0.049
At1g29630.1 68414.m03622 exonuclease, putative similar to Swiss-... 28 4.3
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 28 4.3
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ... 27 7.5
At5g42480.1 68418.m05171 DNAJ plastid division protein (ARC6) al... 27 9.9
>At3g15080.1 68416.m01907 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 275
Score = 85.4 bits (202), Expect = 2e-17
Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 1 MADAVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQ 60
+ D V++DC+ +GV S+G ++ V +VN+ +Y+ + P + D+RT GI+
Sbjct: 80 LTDEVAMDCEMVGV--SQGTKSALGRVTLVNKWGNVLYDEFVRPVE-HVVDFRTSISGIR 136
Query: 61 AQDLSRGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYK 120
+DL + +V + V+ ++K +LVG+ + L+ L L HP+ +IRD Y + +
Sbjct: 137 PRDLRKAKDFRVAQTKVAELIKGKILVGHALHNDLKALLLTHPKKDIRDTGEYQPFLK-G 195
Query: 121 KYNPTLRQLTRSYLSRGLE-APRTAVKDATAAMDLYLKVAEFWEEELLNET 170
K +L+ L L ++ + DA AAM LY K + WE+ + ++T
Sbjct: 196 KTRKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKEWEKTVKDQT 246
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 72.5 bits (170), Expect = 2e-13
Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 11/166 (6%)
Query: 4 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQD 63
A+++DC+ +G ++G + ASV +V++D+ +++ + P L ++DYR G+ +D
Sbjct: 132 AMALDCEMVG-GGADGTIDQCASVCLVDDDENVIFSTHVQPL-LPVTDYRHEITGLTKED 189
Query: 64 LSRGLHIKVVRQAVSRIL--------KNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHL 115
L G+ ++ VR+ V L LLVG+D+ + L L +P +RD + Y
Sbjct: 190 LKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVP 249
Query: 116 YTRYKKYNPTLRQLTRSYLSRGLEAPRTAV-KDATAAMDLYLKVAE 160
+ + +L+ LT+SYL ++ + V +D +AM LY ++ +
Sbjct: 250 LMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRD 295
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 72.5 bits (170), Expect = 2e-13
Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 11/166 (6%)
Query: 4 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQD 63
A+++DC+ +G ++G + ASV +V++D+ +++ + P L ++DYR G+ +D
Sbjct: 132 AMALDCEMVG-GGADGTIDQCASVCLVDDDENVIFSTHVQPL-LPVTDYRHEITGLTKED 189
Query: 64 LSRGLHIKVVRQAVSRIL--------KNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHL 115
L G+ ++ VR+ V L LLVG+D+ + L L +P +RD + Y
Sbjct: 190 LKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVP 249
Query: 116 YTRYKKYNPTLRQLTRSYLSRGLEAPRTAV-KDATAAMDLYLKVAE 160
+ + +L+ LT+SYL ++ + V +D +AM LY ++ +
Sbjct: 250 LMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRD 295
>At3g50100.1 68416.m05477 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 406
Score = 63.7 bits (148), Expect = 7e-11
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 5 VSIDCKSIGVES-SEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQD 63
V++DC+ + E +EG+ V +V+ D + + + P N + DYRT GI A+D
Sbjct: 141 VAVDCEMVLCEDGTEGL----VRVGVVDRDLKVILDEFVKP-NKPVVDYRTDITGITAED 195
Query: 64 LSRG-LHIKVVRQAVSRILKN-CLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKK 121
+ L + +++ + L +LVG+ ++R L +L + HP+ + D + Y +K
Sbjct: 196 IENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPK--VIDTALVFKYPNTRK 253
Query: 122 Y-NPTLRQLTRSYLS---RGLEAPRTAVKDATAAMDLYLKVAE 160
P+L L +S L R P V DA+AAM L L V E
Sbjct: 254 LRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVE 296
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 55.6 bits (128), Expect = 2e-08
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 5 VSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDL 64
V++ CK +G S+G + A V I +E +++ + P ++ ++ YR GI+ ++L
Sbjct: 133 VALSCKMVG-GGSDGSLDLCARVCITDESDNVIFHTYVKP-SMAVTSYRYETTGIRPENL 190
Query: 65 SRGLHIKVVRQAVSRILKNC--------------LLVGYDVSRSLRLLGLGHPEDNIRDV 110
+ +K V++ + L N +LVG+ + L L L +P IRD
Sbjct: 191 RDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIRDT 250
Query: 111 STYHLYTRYKKYNPTLRQLTRSYLSRGLE-APRTAVKDATAAMDLYLKV 158
+ Y + K + +L+ LT++YL + + +D A M LY ++
Sbjct: 251 AKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTRM 299
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 54.0 bits (124), Expect = 6e-08
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 5 VSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDL 64
V++ CK +G S+G + A V I +E + V++ + P + +++YR GI+ ++L
Sbjct: 127 VALSCKMVG-GGSDGSLDLCARVCITDESENVVFHTYVKP-TIPVTNYRYEMTGIRPENL 184
Query: 65 SRGLHIKVVRQAVSRILKNC--------------LLVGYDVSRSLRLLGLGHPEDNIRDV 110
+ +K ++ V L N +LVG+ + L L L + IRD
Sbjct: 185 RDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMIRDT 244
Query: 111 STYHLYTRYKKYNPTLRQLTRSYLSRGLEAP-RTAVKDATAAMDLYLKV 158
+ Y + K + +L+ LT++YL + + +D A M LY ++
Sbjct: 245 AEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRM 293
>At5g25800.1 68418.m03062 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 567
Score = 48.4 bits (110), Expect = 3e-06
Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 14/160 (8%)
Query: 3 DAVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQ 62
+ V++DC+ + EG+ V +V+ + + ++ P N I+DY TR+ GI A
Sbjct: 214 EIVALDCEMC--ITKEGLEL--TRVTLVDIQGQVLLDKLVMPTN-PITDYNTRYSGITAV 268
Query: 63 DLSRGL--HIKVVRQA-VSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRY 119
+ G+ +K +++ + + K +LVG+ + L L + H + + D + + +
Sbjct: 269 -MMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISH--NLVIDTAVLYKHPHG 325
Query: 120 KKYNPTLRQLTRSYLSRGL---EAPRTAVKDATAAMDLYL 156
+ Y LR L + +L+R + E+ + +DA AAMDL L
Sbjct: 326 RSYKTKLRILAKKFLAREIQESESGHDSAEDAKAAMDLAL 365
>At5g05540.1 68418.m00601 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 466
Score = 48.4 bits (110), Expect = 3e-06
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 3 DAVSIDCKSIGVES-SEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQA 61
+ ++IDC+ + E SE + VA V+ D + + + P N + DYRT G+ A
Sbjct: 141 EMIAIDCEMVLCEDGSEAV----VRVAAVDRDLKVILDEFVKP-NQPVVDYRTFITGLTA 195
Query: 62 QDLSRGL--HIKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLY--- 116
QDL + + + + + I ++ +LVG ++ L++L + H + D S Y
Sbjct: 196 QDLEKATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHA--RVIDTSLVFKYNYD 253
Query: 117 -TR--YKKYNPTLRQLTRSYLSRGLE---APRTAVKDATAAMDLYLKVAE 160
TR + P+L L + L ++ P V DA AAM L L + +
Sbjct: 254 GTRRPLRLKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILD 303
>At5g67240.1 68418.m08475 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 745
Score = 34.3 bits (75), Expect = 0.049
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 5 VSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDL 64
+SIDC+ + E V V+ D V + + P + + DY+T G+ A+DL
Sbjct: 146 LSIDCEMVTCEDGSQAL---VRVGAVDRDLKVVLDKFVKP-DKPVIDYKTDITGVTAEDL 201
Query: 65 SRG-LHIKVVRQAVSRILK-NCLLVGYDVSRSLR 96
R L + +++ + R L +LVG+ + L+
Sbjct: 202 ERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQ 235
>At1g29630.1 68414.m03622 exonuclease, putative similar to
Swiss-Prot:P53695 exonuclease I (EXO I)
[Schizosaccharomyces pombe]
Length = 317
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 57 HGI--QAQDLSRGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYH 114
HG+ QA L + + + + +L+ C+L G D +SL +GL I +Y
Sbjct: 191 HGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYD 250
Query: 115 LYTRYKKYN 123
++ KY+
Sbjct: 251 RVIKHLKYS 259
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 24 PASVAIVNEDKICVYNAVINPRN 46
PASV E CVY AV NP++
Sbjct: 139 PASVRTFKEHAYCVYQAVWNPKH 161
>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1705
Score = 27.1 bits (57), Expect = 7.5
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 63 DLSRGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKKY 122
DL+ L + + Q CL V YD+ R L L +N+ D + +L ++Y
Sbjct: 1562 DLAEQLLVYFIEQGKKECFATCLFVCYDLIRPDVALELAW-INNMIDFAFPYLLQFIREY 1620
Query: 123 NPTLRQLTRSYL--SRGLEAPRTAVKDATAAMDLYLKV 158
+ + +L + L + ++A KD + ++Y ++
Sbjct: 1621 SGKVDELIKDKLEAQKEVKAKEQEEKDVMSQQNMYAQL 1658
>At5g42480.1 68418.m05171 DNAJ plastid division protein (ARC6)
almost identical to dnaJ plastid division protein ARC6
(GI:33436339) [Arabidopsis thaliana];low similarity to
cell division protein Ftn2 [Synechococcus sp. PCC 7942]
GI:16226084; contains Pfam profile PF00226: DnaJ domain
Length = 801
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 86 LVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKKY 122
LV + S L L HPE+N DV TY TRY+ +
Sbjct: 751 LVEATLEESACLSDLVHPENNATDVRTY--TTRYEVF 785
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,086,325
Number of Sequences: 28952
Number of extensions: 150777
Number of successful extensions: 315
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 14
length of query: 183
length of database: 12,070,560
effective HSP length: 77
effective length of query: 106
effective length of database: 9,841,256
effective search space: 1043173136
effective search space used: 1043173136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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