Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001829-TA|BGIBMGA001829-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(224 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15080.1 68416.m01907 exonuclease family protein contains exo... 126 9e-30
At3g50100.1 68416.m05477 exonuclease family protein contains exo... 79 2e-15
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 68 5e-12
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 68 5e-12
At5g05540.1 68418.m00601 exonuclease family protein contains exo... 67 1e-11
At5g67240.1 68418.m08475 exonuclease family protein contains exo... 65 3e-11
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 63 2e-10
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 57 8e-09
At5g25800.1 68418.m03062 exonuclease family protein contains exo... 57 8e-09
At3g50090.1 68416.m05476 exonuclease family protein contains exo... 56 3e-08
At5g03560.1 68418.m00314 expressed protein 32 0.36
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 32 0.36
At1g74390.1 68414.m08618 exonuclease family protein contains exo... 31 0.48
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 31 0.48
At2g18260.1 68415.m02129 syntaxin-related protein, putative (SYP... 31 0.63
At5g61390.1 68418.m07702 exonuclease family protein contains exo... 30 1.1
At5g55600.1 68418.m06932 agenet domain-containing protein / brom... 30 1.1
At5g07710.1 68418.m00884 exonuclease family protein contains exo... 29 1.9
At3g28230.1 68416.m03526 hypothetical protein 29 1.9
At5g57130.1 68418.m07135 expressed protein 29 2.6
At5g45520.1 68418.m05591 hypothetical protein 29 2.6
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila... 29 2.6
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 29 3.4
At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containi... 29 3.4
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 28 4.5
At5g45820.1 68418.m05635 CBL-interacting protein kinase 20 (CIPK... 28 5.9
At3g28770.1 68416.m03591 expressed protein 28 5.9
At4g25430.1 68417.m03657 hypothetical protein 27 7.8
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 27 7.8
>At3g15080.1 68416.m01907 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 275
Score = 126 bits (305), Expect = 9e-30
Identities = 58/108 (53%), Positives = 80/108 (74%), Gaps = 1/108 (0%)
Query: 107 NKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIR 166
+ +T +AMDCEMVG+ G L RV+LVNK+G+ +YD+FV+P E V D+RT +SGIR
Sbjct: 78 SSLTDEVAMDCEMVGVS-QGTKSALGRVTLVNKWGNVLYDEFVRPVEHVVDFRTSISGIR 136
Query: 167 KEDLINGEDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIR 214
DL +DF + Q +VA++I+GKILVGH+L NDL L L+HPK++IR
Sbjct: 137 PRDLRKAKDFRVAQTKVAELIKGKILVGHALHNDLKALLLTHPKKDIR 184
>At3g50100.1 68416.m05477 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 406
Score = 79.0 bits (186), Expect = 2e-15
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 6/129 (4%)
Query: 84 NLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDC 143
+ +P D D+ + +K ++ T +A+DCEMV + DG + L RV +V++
Sbjct: 114 SFKPYSEDWFVSDVGMKMKKVMES--TNMVAVDCEMV-LCEDGTEG-LVRVGVVDRDLKV 169
Query: 144 IYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSI-VQKEVADVI-RGKILVGHSLKNDL 201
I D+FVKP + V DYRT ++GI ED+ N + +Q+ + + G ILVGHSL DL
Sbjct: 170 ILDEFVKPNKPVVDYRTDITGITAEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDL 229
Query: 202 NVLFLSHPK 210
VL + HPK
Sbjct: 230 EVLKIDHPK 238
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 68.1 bits (159), Expect = 5e-12
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
Query: 111 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 170
K +A+DCEMVG G DG A V LV+ + I+ V+P V DYR ++G+ KEDL
Sbjct: 131 KAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDL 190
Query: 171 INGEDFSIVQKEVADVIRG--------KILVGHSLKNDLNVLFLSHPKRNIR 214
+G V++ V + G +LVGH L++D++ L L +P +R
Sbjct: 191 KDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLR 242
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 68.1 bits (159), Expect = 5e-12
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
Query: 111 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 170
K +A+DCEMVG G DG A V LV+ + I+ V+P V DYR ++G+ KEDL
Sbjct: 131 KAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDL 190
Query: 171 INGEDFSIVQKEVADVIRG--------KILVGHSLKNDLNVLFLSHPKRNIR 214
+G V++ V + G +LVGH L++D++ L L +P +R
Sbjct: 191 KDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLR 242
>At5g05540.1 68418.m00601 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 466
Score = 66.9 bits (156), Expect = 1e-11
Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 99 LNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDY 158
L +K KI + IA+DCEMV + DG++ ++ RV+ V++ I D+FVKP + V DY
Sbjct: 130 LGKKKMEPTKI-EMIAIDCEMV-LCEDGSEAVV-RVAAVDRDLKVILDEFVKPNQPVVDY 186
Query: 159 RTIVSGIRKEDLING--EDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPK 210
RT ++G+ +DL I +K + + ILVG SL +DL VL + H +
Sbjct: 187 RTFITGLTAQDLEKATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHAR 240
>At5g67240.1 68418.m08475 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 745
Score = 65.3 bits (152), Expect = 3e-11
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 99 LNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDY 158
L +K K T+ +++DCEMV DG+ L RV V++ + DKFVKP + V DY
Sbjct: 132 LGKKKSKVIKSTRMLSIDCEMVTCE-DGSQ-ALVRVGAVDRDLKVVLDKFVKPDKPVIDY 189
Query: 159 RTIVSGIRKEDLINGE-DFSIVQKEVADVIR-GKILVGHSLKNDL 201
+T ++G+ EDL + +QK++ + G ILVGH L NDL
Sbjct: 190 KTDITGVTAEDLERATLSVADIQKKLRRFLSVGTILVGHGLHNDL 234
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 14/118 (11%)
Query: 111 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 170
+ +A+ C+MVG G DG+ + ARV + ++ + I+ +VKP V YR +GIR E+L
Sbjct: 131 RVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRPENL 190
Query: 171 INGEDFSIVQKEVADVI--------------RGKILVGHSLKNDLNVLFLSHPKRNIR 214
+ VQ+++ + + + +ILVGH L +DL+ L L +P IR
Sbjct: 191 RDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIR 248
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 57.2 bits (132), Expect = 8e-09
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 14/118 (11%)
Query: 111 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 170
+ +A+ C+MVG G DG+ + ARV + ++ + ++ +VKP V +YR ++GIR E+L
Sbjct: 125 RVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRPENL 184
Query: 171 INGEDFSIVQKEVADVI--------------RGKILVGHSLKNDLNVLFLSHPKRNIR 214
+ Q++V + + + +ILVGH L N L+ L L + IR
Sbjct: 185 RDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMIR 242
>At5g25800.1 68418.m03062 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 567
Score = 57.2 bits (132), Expect = 8e-09
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 111 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 170
+ +A+DCEM I +G + L RV+LV+ G + DK V P + DY T SGI +
Sbjct: 214 EIVALDCEMC-ITKEGLE--LTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITAV-M 269
Query: 171 INGEDFSI--VQKEVAD-VIRGKILVGHSLKNDLNVLFLSH 208
+ G ++ +Q+E V + ILVGHSL+NDL L +SH
Sbjct: 270 MEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISH 310
>At3g50090.1 68416.m05476 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 322
Score = 55.6 bits (128), Expect = 3e-08
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 111 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 170
+ +A+DCEMV + DG + ++ RV V++ I D+FVKP + V DYRT ++G+ ED
Sbjct: 74 QMLALDCEMV-LCEDGTEGVV-RVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAED- 130
Query: 171 INGEDFSIV--QKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIR 214
+ S+V Q+++ + G IL+ H + D +++F R +R
Sbjct: 131 VQKATLSLVDIQEKLRPFLSAGAILIDHPIVIDTSLVFKYPNSRKLR 177
>At5g03560.1 68418.m00314 expressed protein
Length = 241
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 68 NKSKDLQPTVRKFETLNLEPDQADGHE-DDIALNDRKQAKNKITKF 112
NK+K+ + +++K T+ LE DQ+ E D+ N+ KQ N + ++
Sbjct: 172 NKAKEWRVSLKKAWTMKLEEDQSGWEERSDLLKNELKQINNMVFRY 217
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 31.9 bits (69), Expect = 0.36
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 142 DCIYDKFVKPREEVKDYRTIVSGIRKEDL---INGEDFSIVQKEVADVIRGKILVGHSLK 198
+ IY F KP E+ K Y + + DL IN ++ V + D + +L + LK
Sbjct: 268 ESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLK 327
Query: 199 NDLNVLFLSHP 209
N LNV+F +P
Sbjct: 328 N-LNVMFKLNP 337
>At1g74390.1 68414.m08618 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 506
Score = 31.5 bits (68), Expect = 0.48
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 163 SGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSL 197
SGI ++ +++ FS + +V D++ G+I GH++
Sbjct: 71 SGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNI 105
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 17 NQTVSLRGLINAN---WQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDL 73
N+ ++++ + AN QK ++ D +E +A + +Y K + +E+ K+ +
Sbjct: 641 NEKMAMKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKL--HELSEKLSFKTSQM 698
Query: 74 QPTVRKFETLNLEPDQADGHEDDIALNDRKQAK 106
+ + + + E D HE+D+ N ++ K
Sbjct: 699 ERMLENLDEKSNEIDNQKRHEEDVTANLNQEIK 731
>At2g18260.1 68415.m02129 syntaxin-related protein, putative
(SYP112) similar to SP|Q42374 Syntaxin-related protein
KNOLLE (Syntaxin 111) (AtSYP111) {Arabidopsis thaliana}
Length = 285
Score = 31.1 bits (67), Expect = 0.63
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 34 LASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETL-NLEPDQADG 92
L + D++E+ + TG+ N E+ I+ S V+ FE ++ +
Sbjct: 157 LRERIFADYREDLKRKYFLATGEEPSNEDMEKMISGSGSCSDLVKTFEVKPEMDLKTKER 216
Query: 93 HEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPR 152
HE A+ND K++ N++ + +V D D + A V+ F C+ V R
Sbjct: 217 HE---AVNDIKRSLNRLHQVFLDMAVLVETQGDRIDDIEANVANAGSFIFCVDHVNVYIR 273
Query: 153 EE 154
EE
Sbjct: 274 EE 275
>At5g61390.1 68418.m07702 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 487
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 163 SGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSL 197
+GI++ED+ + F+ + V D++ G+I GH++
Sbjct: 74 NGIKREDVESALTFADIADTVYDILHGRIWAGHNI 108
>At5g55600.1 68418.m06932 agenet domain-containing protein /
bromo-adjacent homology (BAH) domain-containing protein
contains Pfam profile PF01426: BAH domain and PF05641:
Agenet domain
Length = 663
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 64 EQKINKSKDLQPTVRKFET-LNLEPDQADGHEDDIALNDRKQAKNK 108
E K++K +D + + +T +N E D EDD+ LND K K++
Sbjct: 603 ENKLSKEEDKEVGSNETKTYVNHENTVEDHKEDDVTLNDEKARKSE 648
>At5g07710.1 68418.m00884 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 468
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 163 SGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSL 197
+GI+++D++ F+ + V D++ G+I GH++
Sbjct: 66 NGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNI 100
>At3g28230.1 68416.m03526 hypothetical protein
Length = 174
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 3 ENSHKRKRTASDDHN-QTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNR 61
+ KRK +D + + + LR + + S +L K +K+ E +F R
Sbjct: 12 KKGQKRKHQQNDQADMEMLKLRAALEGK-HRSNGSTVLKSAKAQKRQKSEDSEDEFYRQV 70
Query: 62 KTEQKINKSKDLQPTVRKFETLNLEPDQADG 92
K +Q+ K+ + RK + PD DG
Sbjct: 71 KQKQEAKKAAKAEIYSRKPYLIPSSPDLVDG 101
>At5g57130.1 68418.m07135 expressed protein
Length = 920
Score = 29.1 bits (62), Expect = 2.6
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 26 INANWQKLLASNLLMDHKEEKQAPKEQYTGKFRR-NRKTEQKINKSKDLQ-----PTVRK 79
+ AN KLL S L H + + K++ G R+ NR E N++ L P
Sbjct: 421 LKANQDKLLPS-WLQSHDADSSSQKDELMGLKRKWNRFCETLHNQTGQLSMMGNYPYGLP 479
Query: 80 FETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDH 129
+ + + E ++ D + L ++A N I KF + + GN+H
Sbjct: 480 YGSSH-ESSKSTSLIDSLGLKPNQRATNSIAKFRRQNSCTIEFDLGGNEH 528
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/61 (22%), Positives = 35/61 (57%)
Query: 11 TASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKS 70
T D + +++ ++++ +K+ S+ ++ HKE++ P E+ + R R + ++I K+
Sbjct: 3 TKECDIYKIINILSQLDSDLKKIPVSDKVISHKEQQGEPSEEKRSWWVRVRGSLKRIGKA 62
Query: 71 K 71
K
Sbjct: 63 K 63
>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 841
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 63 TEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALND-RKQAKNKITKFIAMDCE 118
T KIN + +++ + E +NL+ + HE N+ R+ A +I + + + CE
Sbjct: 240 TSPKINYAPEVEKVCKALEAVNLKTSEILNHETTQICNEGRQNALAEILEILTVVCE 296
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 34 LASNLLMDHKEEKQAPKEQY--TGKFRRNR-KTEQKINKSKDLQPTVRKFETLNLEPDQA 90
+ S +L D KEEK+ K+ T + + K EQK+ S + K ++ + +
Sbjct: 1 MPSLMLSDKKEEKKMKKKMALDTPELDSKKGKKEQKLKLSDSDEEESEKKKSKKKDKKRK 60
Query: 91 DGHEDDIALNDRKQAKNKITKFIAMDCEMVGI 122
E+D +D K K +K + + E V +
Sbjct: 61 ASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEV 92
>At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 657
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 144 IYDKFVKPRE--EVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSLK 198
IYD +K + + Y +IV+G+ K + + + E+ D++ L+ SLK
Sbjct: 488 IYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAAEAVVNAMEIKDIVTYNTLLNESLK 544
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 43 KEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDD 96
KE+++ KE+ K + R+ E++ K K + + R+ D ++GH+D+
Sbjct: 808 KEKERDEKEKRKDKDKERREKEREREKEKGKERSKREESDGETAMDVSEGHKDE 861
>At5g45820.1 68418.m05635 CBL-interacting protein kinase 20 (CIPK20)
identical to CBL-interacting protein kinase 20
[Arabidopsis thaliana] gi|14486384|gb|AAK61493
Length = 439
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 54 TGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIA--LNDRKQAK 106
+G F + ++E K KD + V KFE + ++ + + D+ + D+++ +
Sbjct: 318 SGLFEKEERSESKFTTKKDAKEIVSKFEEIATSSERFNLTKSDVGVKMEDKREGR 372
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/110 (19%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 3 ENSHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRK 62
++S +RK + ++ + + +K + N KE+K+ ++ + K ++K
Sbjct: 1041 KDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKK 1100
Query: 63 TEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKN-KITK 111
++K +SK + K + LE ++ ++D N++K++++ K+ K
Sbjct: 1101 EKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKED--KNEKKKSQHVKLVK 1148
>At4g25430.1 68417.m03657 hypothetical protein
Length = 455
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 10 RTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINK 69
R +SD N +SL N + L + K+++Q+P +Y+G+ + ++T++++
Sbjct: 181 RISSDSENHRLSLELNRENNKHEEFVRTRLKELKQDEQSPSPRYSGR-QIVKQTKKRVTT 239
Query: 70 SK 71
K
Sbjct: 240 RK 241
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 142 DCIYDKFVKPREEVKDYRTIVSGIRKEDL---INGEDFSIVQKEVADVIRGKILVGHSLK 198
+ IY F KP E+ K Y + + DL IN ++ V + + +L + LK
Sbjct: 267 ESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLK 326
Query: 199 NDLNVLFLSHP 209
N LNV+ +P
Sbjct: 327 N-LNVMLKLNP 336
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,388,149
Number of Sequences: 28952
Number of extensions: 226235
Number of successful extensions: 780
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 41
length of query: 224
length of database: 12,070,560
effective HSP length: 78
effective length of query: 146
effective length of database: 9,812,304
effective search space: 1432596384
effective search space used: 1432596384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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