Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001828-TA|BGIBMGA001828-PA|IPR007087|Zinc finger,
C2H2-type
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 33 0.92
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 33 0.92
At2g06510.2 68415.m00722 replication protein, putative similar t... 32 1.6
At2g06510.1 68415.m00721 replication protein, putative similar t... 32 1.6
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 31 2.1
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 31 2.1
At1g69070.1 68414.m07903 expressed protein 31 2.1
At4g26030.1 68417.m03748 hypothetical protein 31 3.7
At3g57380.1 68416.m06387 expressed protein contains Pfam domain,... 31 3.7
At2g29370.1 68415.m03568 tropinone reductase, putative / tropine... 31 3.7
At1g10240.1 68414.m01154 far-red impaired responsive protein, pu... 31 3.7
At5g12900.1 68418.m01480 expressed protein 30 6.5
At3g13360.1 68416.m01681 expressed protein 29 8.6
At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containi... 29 8.6
At1g20060.1 68414.m02511 kinesin motor protein-related 29 8.6
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 32.7 bits (71), Expect = 0.92
Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 640 NYILHSEGAS----FTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNI 695
N + HS GA+ TC CN V +S HL H + E +
Sbjct: 229 NMLQHSSGATGESATTCRICNVVCDSFEKFTAHLSDIRHISQAAIVESR-------RAQA 281
Query: 696 NMLAKNKYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKHRENM 739
++ AK + C VC + K H KHR N+
Sbjct: 282 SVSAKPIHQAVLVEPLLCKVCQISFTNNDTYKNHTYGKKHRNNL 325
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 32.7 bits (71), Expect = 0.92
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 76 FTTEKKSSLQR-QRFNSLPVSEVPELLKNEFIAVENARQVHICTDCDVEIELNDEEPLME 134
F E K+ L+R +R N+L ++ +L K I ++ R V + + + D+ PL+
Sbjct: 489 FIMELKADLRRRERENTLLQKDISDLQKQVTILLKECRDVQLRCGAARDDD-EDDYPLLS 547
Query: 135 SLQKHFNLEV------HLPKLKRESIDVAEPVILPNMSRRLS-ALECGEMPVLSLEQLRL 187
++ E HL K K + V + V L N+ R LS +E E + ++ L
Sbjct: 548 DVEMEMESEADKIISEHLLKFKDINGLVEQNVKLRNLVRSLSEQIESRETELKETFEVDL 607
Query: 188 RNPVEKLDRNLCSKLTNMLLK-VLPDTSEASIAEALKIYQE 227
+N ++ + + L + + ++ S+A ++Y+E
Sbjct: 608 KNKTDEASAKVATVLKRAEEQGQMIESLHTSVAMYKRLYEE 648
>At2g06510.2 68415.m00722 replication protein, putative similar to
replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)] GI:13536993; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain
Length = 617
Score = 31.9 bits (69), Expect = 1.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 19 SFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDS 69
SFR + D++ + + +T +PS+ KN ETH+RI+ K +S
Sbjct: 293 SFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDES 343
>At2g06510.1 68415.m00721 replication protein, putative similar to
replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)] GI:13536993; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain
Length = 640
Score = 31.9 bits (69), Expect = 1.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 19 SFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDS 69
SFR + D++ + + +T +PS+ KN ETH+RI+ K +S
Sbjct: 316 SFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDES 366
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 31.5 bits (68), Expect = 2.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 564 ETVAKLLRLAVNNEVDKQFA-ALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAE 622
E +++ L+ ++ E D+ + +L K +D+KC C ++ D E ++YH S V +
Sbjct: 445 EALSRSLKQSIYQETDETGSISLYKDDDIKCSICQEEYVDGDELGTIPCQHMYHVSCVQQ 504
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 31.5 bits (68), Expect = 2.1
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 174 CGEMPVLSLEQLRLRNPVEKLDRNLCSKLTNMLLK--VLPDTSEASIAEALKIYQETYDK 231
CG S+ + + P EK + L +L +L K + + SE I E K + T +
Sbjct: 357 CGMSISPSVYRKAKQAPEEKREEILIKELKELLAKEGLSANPSEKEIKEVKKRKERTKEL 416
Query: 232 LCQDVSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANKNTDNDENE 277
D SNI +++ S A + + + +D +++++N+E+E
Sbjct: 417 EGIDTSNIVSSSRRRSSASFVPPPKPIKAEESESDDSEDSENEEDE 462
>At1g69070.1 68414.m07903 expressed protein
Length = 901
Score = 31.5 bits (68), Expect = 2.1
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 24 DDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSS 83
DD++ A K +N + + K+ +E + II + + +E E+K
Sbjct: 161 DDLEASASKRLKHLNRNREVDASGEEERRKSKKEVMEEIIMKSKLG-RMEKAKQKEEKGK 219
Query: 84 LQRQ---RFNSLPVSEVPELLKNEFIAVENARQVHICTDCDVEIEL 126
L + F SL SE E L F+A EN R ++ + D+ +E+
Sbjct: 220 LMDELDKNFKSLVNSEAMESLTKPFVAEENTRDPYLLSLNDMSMEI 265
>At4g26030.1 68417.m03748 hypothetical protein
Length = 220
Score = 30.7 bits (66), Expect = 3.7
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 22/162 (13%)
Query: 535 FYICSICPEYVAVPSFANIV----EHFESNEHMETVAKLLRLAVN--NEVDKQFAALN-K 587
F +I Y A+ +N+V ++ N M + +L+ VN N+ DKQ+ K
Sbjct: 23 FITQTIAKRYHALIPTSNMVIVQNDNDRVNRFMTSYPPILKSTVNPPNDFDKQYETFTPK 82
Query: 588 IEDLKCVYCNFDFRDNRE----AVKHALSNVYHQSAVA------ETKLNANRADIISVYM 637
D C ++ R + + + KH H++ + T++ D I
Sbjct: 83 PIDFFCSQQDYACRQHLDIFSSSPKHYHEQYVHKNGRSVKYICKPTEVLEEIHDEIDYEK 142
Query: 638 KGNYILH---SEGASFTCVNCNGVFNSIRSLLMH--LVHAEH 674
G +I + +SF C+ CN +F++ + L++H L+H+++
Sbjct: 143 DGGWIYSLPFEKDSSFICLKCNSLFDTSQMLVVHTELIHSKN 184
>At3g57380.1 68416.m06387 expressed protein contains Pfam domain,
PF04577: Protein of unknown function (DUF563)
Length = 504
Score = 30.7 bits (66), Expect = 3.7
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 285 AQTKKYRYYGPIEASIVKLLLNHKLVSLVDDRTGKLAFFCIACEYYTLRFHYDSVLSHVF 344
A +++ + +GP E I L ++ DRTG + CI +R H S S VF
Sbjct: 68 AFSRESKGFGPYELFIAPLCSGTSNGTICCDRTGSRSDVCIM--KGDVRTH--SASSSVF 123
Query: 345 SETHVHNLSCIMQSDKHIPFLMSETTIESIKEMNAKFLSGHNITATASGLN 395
T + N + I + K + +++++E+N + N + S +N
Sbjct: 124 LFTSLKNKTKITKKIKPYTRKWETSVMQTVQELNLVYRDEENNSLVVSSVN 174
>At2g29370.1 68415.m03568 tropinone reductase, putative / tropine
dehydrogenase, putative similar to SP|P50162 Tropinone
reductase-I (EC 1.1.1.206) (TR-I) (Tropine
dehydrogenase) {Datura stramonium}
Length = 268
Score = 30.7 bits (66), Expect = 3.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 539 SICPEYVAVPSFANIVEHFESNEHMETVAKLLRLAVNNEVDKQFAAL 585
S+CP ++ PS + + + E +E+V L R+ NEV A L
Sbjct: 195 SVCPWFITTPSTKDFLGDKDVKEKVESVTPLRRVGEANEVSSLVAFL 241
>At1g10240.1 68414.m01154 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 680
Score = 30.7 bits (66), Expect = 3.7
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 328 EYYTLRFHYDSVLSHVFSETHVHNLSCIMQSDKHIPFLMSETTIESIKEMNAKFLSGHNI 387
E+Y L +H +SV + N S + +++HI L + ++ S+ + + FL+G +
Sbjct: 390 EFYRL-YHLESVEEFELGWRDMVN-SFGLHTNRHINNLYASRSLWSLPYLRSHFLAGMTL 447
Query: 388 TATASGLNCRLCKQNIETAEATILHLLDE 416
T + +N + Q +A+ + H +++
Sbjct: 448 TGRSKAINAFI--QRFLSAQTRLAHFVEQ 474
>At5g12900.1 68418.m01480 expressed protein
Length = 562
Score = 29.9 bits (64), Expect = 6.5
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 11/136 (8%)
Query: 55 LQETHKRIIFQK---RDSVEVEYIFTTEKKSSLQRQRFNSLPVSE----VPELLKNEFIA 107
L ++H ++ + R + ++F KK FNS ++E V E+LK+
Sbjct: 188 LTDSHSAVVSSQPRNRGGRVMSWLFPKLKKKQKSNSIFNSPSITEKSEEVSEVLKDSGSG 247
Query: 108 VENARQVHICTDCDVEIELNDEEPLMESL----QKHFNLEVHLPKLKRESIDVAEPVILP 163
VE ++ + + + L + SL +K LE + LK+ + E V
Sbjct: 248 VEKLKRELMEANRSRDAALTQVSEMKSSLGELSEKLQYLESYCDNLKKALREATEVVSQE 307
Query: 164 NMSRRLSALECGEMPV 179
N R S + EMPV
Sbjct: 308 NSGGRSSGKKNSEMPV 323
>At3g13360.1 68416.m01681 expressed protein
Length = 459
Score = 29.5 bits (63), Expect = 8.6
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 23 LDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKS 82
L + KL +H + + + IQ + E+ IFQ++ E+E++ T S
Sbjct: 336 LKEKVKLLEHKLEEARAALEAKEARIQELENSKIESELECIFQRKIETEIEHLMLTRSLS 395
Query: 83 SLQ 85
SLQ
Sbjct: 396 SLQ 398
>At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 583
Score = 29.5 bits (63), Expect = 8.6
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 43 EQSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFNSLPVSEVPELLK 102
+++ I RYL+ L K I + + + EK+ +L R++S ++ LLK
Sbjct: 472 QETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFAL---RYHSEKLAVAFGLLK 528
Query: 103 NEFIAVENARQVHICTDC 120
+A+ + + IC DC
Sbjct: 529 TVDVAITIVKNLRICEDC 546
>At1g20060.1 68414.m02511 kinesin motor protein-related
Length = 951
Score = 29.5 bits (63), Expect = 8.6
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 429 KMKATSPNGQIPEEWGPKDLSWSKYLASVGKPVNNRDHVIIENFIKPSGKVGNFCTCCDM 488
K+K ++P ++ P D S S L V + N R+H+I+ NF K + N C+
Sbjct: 485 KIKLSAPKTSQGKKADPTDRS-SPRLEHVAQDKNEREHIIMRNFSK---VLWNVLKQCNE 540
Query: 489 TLKGPRQVLFNHIRQKKHLRNAAPKKLAL 517
LK +F K LR K L L
Sbjct: 541 KLKVAEGEIFT---LKDSLRREQLKSLGL 566
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,916,754
Number of Sequences: 28952
Number of extensions: 783073
Number of successful extensions: 2413
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2402
Number of HSP's gapped (non-prelim): 21
length of query: 752
length of database: 12,070,560
effective HSP length: 87
effective length of query: 665
effective length of database: 9,551,736
effective search space: 6351904440
effective search space used: 6351904440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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