Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001827-TA|BGIBMGA001827-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(334 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 293 1e-79
SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071) 139 3e-33
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 37 0.027
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.047
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.081
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.19
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 33 0.33
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.43
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.43
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 32 0.57
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37) 32 0.57
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.76
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 31 1.0
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 30 2.3
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 30 3.1
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 30 3.1
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 4.0
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 29 5.4
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 29 7.1
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 29 7.1
SB_24791| Best HMM Match : FYVE (HMM E-Value=7.2e-14) 29 7.1
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 29 7.1
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 28 9.4
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 293 bits (720), Expect = 1e-79
Identities = 136/176 (77%), Positives = 149/176 (84%), Gaps = 1/176 (0%)
Query: 53 VSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAE 112
V +L S SP ++ SEH RFSRKVFVGGLPPDIDEDEI +SF RFG L VDWPHKAE
Sbjct: 321 VPSLASSLNCSP-NSDSEHIPRFSRKVFVGGLPPDIDEDEIHASFCRFGSLTVDWPHKAE 379
Query: 113 SKSYFPPKGYAFLLFQDESSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADAD 172
SKSYFPPKGYAFLL+ +E SV L+ AC +DKLYLCVSSPTI+DKPVQIRPW LADAD
Sbjct: 380 SKSYFPPKGYAFLLYLEEISVQKLISACFRQDDKLYLCVSSPTIKDKPVQIRPWNLADAD 439
Query: 173 FVLDASMPLDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKG 228
FV+D S LDPRKT+FVGGVPRPL+A+ELAMIMDRLYGGVCYAGID DPELKYPKG
Sbjct: 440 FVMDGSQALDPRKTIFVGGVPRPLRAIELAMIMDRLYGGVCYAGIDVDPELKYPKG 495
>SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071)
Length = 210
Score = 139 bits (337), Expect = 3e-33
Identities = 73/168 (43%), Positives = 104/168 (61%), Gaps = 5/168 (2%)
Query: 96 SFRRFGPLVVDWPHKAESKS-YFPPKGYAFLLFQDESSVAALMEAC---ITDEDKLYLCV 151
SF+ FG + V+WP KA+ + + PPKGY +L+F E SV AL+ +C T+ Y +
Sbjct: 6 SFKPFGGVTVEWPGKADGRHLHHPPKGYVYLIFDCEKSVKALLGSCTHDFTNGGDWYFKI 65
Query: 152 SSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLKAVELAMIMDRLYGG 211
SS +R K VQ+ PW L+D ++V LD TVFVGG+ L A LA IM+ L+GG
Sbjct: 66 SSRRMRCKEVQVIPWVLSDTNYVRGPHQRLDTSWTVFVGGLHGMLNAEGLAYIMNELFGG 125
Query: 212 VCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKR 259
V YAGIDTD +YP G+GRV F N +S++ A+ A F++++ K+
Sbjct: 126 VVYAGIDTDKH-RYPIGSGRVTFDNHKSFMNAVRAGFIEIETPKFTKK 172
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 39.1 bits (87), Expect = 0.005
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 72 GERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDES 131
GE RK+++G L + DE EI +F FG VD ES +G+ F+L Q
Sbjct: 4 GENRGRKLYIGNLNFNSDEGEIEQAFEEFGVEKVDILRDKESGR---SRGFGFVLLQSAD 60
Query: 132 SVAALME 138
+A +E
Sbjct: 61 QIAPAIE 67
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 36.7 bits (81), Expect = 0.027
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESS 132
+R R VFVG +P + E+++ F GP++ + PKGY F ++D+ +
Sbjct: 21 DRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISF--RLVFDRETGKPKGYGFCEYKDQET 78
Query: 133 VAALM 137
+ M
Sbjct: 79 ALSAM 83
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 35.9 bits (79), Expect = 0.047
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 53 VSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAE 112
+ G P R + SA +++ + +F+G L ++DE + +F FG +++ P
Sbjct: 77 IKVYGKPIRVNKASAHNKNLD-VGANLFIGNLDTEVDEKLLYDTFSAFG-VILQTPKIMR 134
Query: 113 SKSYFPPKGYAFLLFQDESSVAALMEA 139
KG+AF+ F + A +EA
Sbjct: 135 DSDTGNSKGFAFINFASFDASDAAIEA 161
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 35.1 bits (77), Expect = 0.081
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 41 VNRLSAAGLSMCVSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRF 100
+N + G ++ V + +++P+ E + ++++ + PD+ ED+I S F F
Sbjct: 163 MNGVLLGGRNIKVGRPSNVPQAAPLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAF 222
Query: 101 GPLVVDWPHKAESKSYF--PPKGYAFLLFQDESS 132
G +V H + SK KGY F+ ++++ S
Sbjct: 223 GKVV----HCSLSKEPMTGKHKGYGFIEYENQQS 252
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 33.9 bits (74), Expect = 0.19
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFL 125
V+VG LPPD+ + E+ F ++G ++ E+K F KGYAF+
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSIL-------ETK-VFADKGYAFI 655
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 33.1 bits (72), Expect = 0.33
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
KV++G L + + EI + F +GPL W + P G+AF +F D
Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWVAR-------NPPGFAFCIFDDRRDA---- 81
Query: 138 EACITDEDKLYLC 150
E + + D Y+C
Sbjct: 82 EDAVRELDGRYIC 94
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 33.1 bits (72), Expect = 0.33
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDESSVAAL 136
K+FVGGL + ++ + F ++G LV VD A + P+G+AF+ F+ +S A+
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGR---PRGFAFVQFKHQSEADAI 86
Score = 32.7 bits (71), Expect = 0.43
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAAL 136
+K+FVGGL P+ +++I F + V + + E S +G+ F+ F E +V +
Sbjct: 103 KKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSN-RRRGFCFVSFDSEDTVDKI 161
Query: 137 ME 138
E
Sbjct: 162 CE 163
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 32.7 bits (71), Expect = 0.43
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
+V++G + + + EI F FGPL W + P G+AF +F+D
Sbjct: 3 RVYIGNIGDNASKREIEREFETFGPLRDVWVAR-------NPPGFAFCVFEDRRDA---- 51
Query: 138 EACITDEDKLYLC 150
E + + D Y+C
Sbjct: 52 EDAVRELDGRYIC 64
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 32.7 bits (71), Expect = 0.43
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDE 130
E+ SR VFVGGL DE+ + F +FG V Y + Y F+LF+D+
Sbjct: 76 EKNSRSVFVGGLASGTDEEGLKDYFEQFGE-VESVRIMRTFLGY--SRNYGFVLFKDD 130
Score = 28.3 bits (60), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFG 101
R ++VGGLP E + F++FG
Sbjct: 157 RVIYVGGLPSHFTEQTVREHFKKFG 181
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 32.3 bits (70), Expect = 0.57
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 67 AGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLL 126
A ++ R VF+G LP DI+E+ + F G V+ + KG+ ++L
Sbjct: 46 ASNDKAHDHQRSVFIGNLPFDIEEEPLRELFTTCGN--VESVRLIRDRKTGIGKGFGYVL 103
Query: 127 FQDESSV 133
F+ + +V
Sbjct: 104 FESKDAV 110
>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
Length = 492
Score = 32.3 bits (70), Expect = 0.57
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 131 SSVAALMEACITDEDKL----YLCVSSPTIRDKPVQIRPWRLADADFVLDAS-MPLDPRK 185
S V + CI + KL Y+ P I D+P + RP R A+ V S MP P
Sbjct: 386 SRVERIGRHCIPEGTKLQILPYIVHRDPEIWDQPDEFRPERFAECQDVAPPSYMPFVPAV 445
Query: 186 TVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTD 220
+G R V + +++ +L C++ I D
Sbjct: 446 QDCIG---REFLDVSIKLLLTKLLPKFCFSQITID 477
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 32.3 bits (70), Expect = 0.57
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALME 138
+FV LP D E EI F + G VV +++ PKGY ++ ++ ESS + +
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHG--VVKQVRLVTNRA-GKPKGYGYVEYEQESSASTAVL 229
Query: 139 ACITDEDK---LYLCVSS-PTIRDKPVQIRP 165
E K + + +S+ PT R P Q P
Sbjct: 230 TLDKTEVKGRTISVALSNPPTRRGPPRQEHP 260
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 31.9 bits (69), Expect = 0.76
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 61 RSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSS---FRRFGPLVVDWPHKAESKSYF 117
R+ P +E ++K+F+GGL + E+++ ++ F PL + E+ +
Sbjct: 88 RAMPRDDPNELAHVRTKKLFIGGLKDEHSEEDVKTALAPLSPFAPLEIKMVRDRETNKF- 146
Query: 118 PPKGYAFLLFQDESSVAAL 136
KGY F+ F +E V L
Sbjct: 147 --KGYCFVNFPNEHIVDKL 163
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 31.5 bits (68), Expect = 1.0
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
+VFVG +P D+ EDE+ F GP+ + + +GYAF+++ + +
Sbjct: 75 EVFVGKIPRDLYEDELVPVFETAGPI---YEVRLMMDFNGQNRGYAFVVYTSKDDAKRCV 131
Query: 138 EACITDEDKLYLCVSSPTIRDKPVQI 163
+ E + C+ + DK + +
Sbjct: 132 KTLNNYEIRKGKCIGVCSSVDKSLLV 157
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 31.5 bits (68), Expect = 1.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
K+F+GGLP ++ED++ FG L + + + KGYAF + D
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGELRAF--NLVKDSATGLSKGYAFCEYVD 723
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 57 GSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVV 105
G A++ V G + G KVF+GGL E+++ F +G + V
Sbjct: 182 GQQAQTGAVMGGPQRGSANDGKVFIGGLAFGTTEEDLKEYFSTYGMVEV 230
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 85 PPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALMEAC 140
P D +++++ S F FG +++ KGY ++ F S+ A +E C
Sbjct: 61 PKDFNDEDLRSKFESFGD--IEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALENC 114
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAAL 136
RK+F+GGL + E+ + F ++G +V K + +S +G+ F+ ++ SV +
Sbjct: 50 RKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRS----RGFGFVTYESSDSVNEV 105
Query: 137 ME 138
++
Sbjct: 106 LK 107
Score = 30.3 bits (65), Expect = 2.3
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 59 PARSSPVS-AGSEHGERFSRKVFVGGLPPDIDEDEITSSF----RRFG-PLVVDWPHKAE 112
P RS P +G+ +RK+FVGGL E++I F R+ G V+D K +
Sbjct: 120 PKRSVPRDESGAPEAMSKTRKIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRD 179
Query: 113 SKSYFPPKGYAFLLFQDESSV 133
+ +G+AF+ F ++ V
Sbjct: 180 RDNPKRIRGFAFVTFDNDEIV 200
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
K++VG L + D E+ +F +FG L W + P G+AF+ ++D
Sbjct: 5 KLYVGNLGRNADSSELERAFEKFGRLSKVWVAR-------NPPGFAFVEYED 49
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.9 bits (64), Expect = 3.1
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLF 127
+++G +P E+EI F +FG V+ + SK KGYAF+ F
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFG--TVNRIRLSRSKKSARSKGYAFVEF 146
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.9 bits (64), Expect = 3.1
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLV 104
+++ GLP D+ E+E+ + F+ FG ++
Sbjct: 115 LYISGLPKDMKEEEVEALFKPFGKII 140
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.5 bits (63), Expect = 4.0
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD--- 129
E+ +VF+G +P D EDE+ F G + D+ + S KG+AF F +
Sbjct: 148 EKVCSQVFIGKVPRDCFEDELIPVFEECGH-IYDFRLMIDPISGL-TKGFAFCTFSNKDE 205
Query: 130 -ESSVAALMEACITDEDKLYLCVS 152
+++V L I +L +C+S
Sbjct: 206 AQNAVKKLDNKEIRPGKRLGVCIS 229
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFG 101
R +R ++VG LP +I E++I F R+G
Sbjct: 3 RETRHLWVGNLPENIREEDIVKHFTRYG 30
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 29.5 bits (63), Expect = 4.0
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 182 DPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYI 241
DPR +FVGG+ R L + YG + + D K +G G V F++ +
Sbjct: 11 DPRAKLFVGGLNRETTNETLREYFE-AYGELTDVVVICDSATKKSRGFGYVTFADYKVTR 69
Query: 242 AAISARFVQLQHGDIDKRVEVK 263
+ + H K VEVK
Sbjct: 70 NVLKDKVENGAHRIDGKEVEVK 91
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 61 RSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESK-SYFPP 119
R+ P S ++K+FVGGLP D +++I + VD K
Sbjct: 92 RAIPRDDNSATSHEKTKKIFVGGLPEDATKEDIQEAIESLLEEKVDKVDLIMKKEDETKH 151
Query: 120 KGYAFLLFQDESSVAAL 136
+G+AF+ +E L
Sbjct: 152 RGFAFVELNNEDQADEL 168
>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 216 GIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGD 255
GIDT+ Y R F Q+S I A+ FV + HGD
Sbjct: 414 GIDTEESYPYEARNDRCRF--QKSNIGAVDTGFVDVTHGD 451
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQD 129
+V+VG LP D+ E ++ F ++G + VD ++ + PP +AF+ F+D
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNR---RGAGPP--FAFVEFED 309
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDESS 132
V+VG LP + ++ F R+G +V V E++ +G AF+LF D S
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRE---SRGVAFILFIDRQS 63
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
R +VGGL ++DE + ++F FG + V P + + +G+ F+ F+ AA
Sbjct: 5 RVAYVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKH---RGFGFVEFEFAEDTAA 61
Query: 136 LME 138
++
Sbjct: 62 AID 64
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 258 KRVEVKPYVLDDQMCDECAGARCGSKFAPFFCAN--VTCLQYYCEHC 302
K + K Y + D+ C EC CG KF F + C Q +C C
Sbjct: 119 KESDFKQYWMPDETCKEC--YECGEKFNTFRRRHHCRLCGQIFCYRC 163
>SB_24791| Best HMM Match : FYVE (HMM E-Value=7.2e-14)
Length = 64
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 258 KRVEVKPYVLDDQMCDECAGARCGSKFAPFFCAN--VTCLQYYCEHC 302
K + K Y + D+ C EC CG KF F + C Q +C C
Sbjct: 6 KESDFKQYWMPDETCKEC--YECGEKFNTFRRRHHCRLCGQIFCYRC 50
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPL 103
V++GGL D+ E+ + F +FGP+
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPV 550
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 70 EHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
E + +R +FVG L I ++ SF +FG +V+D K ++ YAF+ F D
Sbjct: 230 EEDPKATRTLFVGNLETGISCQDLRLSFEKFG-VVLDVDIKRPARG--QGNTYAFVKFAD 286
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 28.3 bits (60), Expect = 9.4
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDW 107
++K+F+GGL + E+++ F +FG + ++
Sbjct: 182 TKKIFIGGLSTNTSEEDMKKYFSQFGKVSCEY 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.138 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,185,631
Number of Sequences: 59808
Number of extensions: 469032
Number of successful extensions: 935
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 50
length of query: 334
length of database: 16,821,457
effective HSP length: 82
effective length of query: 252
effective length of database: 11,917,201
effective search space: 3003134652
effective search space used: 3003134652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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