Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001825-TA|BGIBMGA001825-PA|IPR006649|Like-Sm
ribonucleoprotein, eukaryotic and archaea-type, core,
IPR010920|Like-Sm ribonucleoprotein-related, core, IPR001163|Like-Sm
ribonucleoprotein, core
(139 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 171 1e-43
At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putati... 66 1e-11
At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3, put... 65 2e-11
At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D, puta... 47 4e-06
At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1, put... 39 0.001
At3g07590.1 68416.m00909 small nuclear ribonucleoprotein D1, put... 37 0.004
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 37 0.006
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta... 35 0.023
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 34 0.031
At4g03960.1 68417.m00559 tyrosine specific protein phosphatase f... 30 0.50
At1g05000.1 68414.m00501 tyrosine specific protein phosphatase f... 30 0.66
At2g32960.1 68415.m04040 tyrosine specific protein phosphatase f... 29 0.87
At3g02800.1 68416.m00272 tyrosine specific protein phosphatase f... 29 1.2
At5g16480.1 68418.m01926 tyrosine specific protein phosphatase f... 29 1.5
At5g44980.1 68418.m05516 F-box family protein contains F-box dom... 27 3.5
At3g18295.1 68416.m02327 expressed protein 27 3.5
At1g08750.3 68414.m00974 GPI-anchor transamidase, putative simil... 27 6.1
At1g08750.2 68414.m00973 GPI-anchor transamidase, putative simil... 27 6.1
At1g08750.1 68414.m00972 GPI-anchor transamidase, putative simil... 27 6.1
At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related... 26 8.1
At1g78760.1 68414.m09179 F-box family protein contains F-box dom... 26 8.1
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 171 bits (416), Expect = 1e-43
Identities = 76/101 (75%), Positives = 87/101 (86%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQNM 101
IRG+TIKYLR+PDEVID V+EE R V +GRG+ +
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGV 101
>At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
small nuclear ribonucleoprotein Sm D3 (snRNP core
protein D3, Sm-D3) [Mus musculus] SWISS-PROT:P43331
Length = 131
Score = 65.7 bits (153), Expect = 1e-11
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
+P+ LL A H + VELK+GE Y G ++ C DNW N L ++ T++DG K ++ +
Sbjct: 7 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNW-NCQLEDITYTAKDG-KVSQLEHVF 64
Query: 61 IRGSTIKYLRIPD--EVIDMVKE-ETQVKARGRN-EVSKGRG 98
IRGS ++++ IPD + M K + ++K + + V +GRG
Sbjct: 65 IRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG 106
>At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3,
putative / snRNP core protein D3, putative / Sm protein
D3, putative similar to SWISS-PROT:P43331 small nuclear
ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3)
[Mouse]
Length = 128
Score = 64.9 bits (151), Expect = 2e-11
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
+P+ LL + H + VE+K+GE Y G ++ C DNW N L + T++DG K ++ +
Sbjct: 7 IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNE---VSKGRGQNM 101
IRGS +++L IPD ++ V+ +G++ V +GRG M
Sbjct: 65 IRGSLVRFLVIPD-MLKNAPMFKDVRGKGKSASLGVGRGRGAAM 107
>At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D,
putative / snRNP core SM-like protein, putative / U6
snRNA-associated Sm-like protein, putative similar to
SWISS-PROT:Q9Y333 U6 snRNA-associated Sm-like protein
LSm2 (Small nuclear ribonuclear protein D homolog, G7b,
SnRNP core SM-like protein SM-x5) [Homo sapiens]
Length = 93
Score = 47.2 bits (107), Expect = 4e-06
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
Query: 58 ECYIRGSTIKYLRIP-DEV-IDMVKEETQVKARG 89
C+IRGS ++Y+++P D V +D++ + + +ARG
Sbjct: 59 NCFIRGSVVRYVQLPKDGVDVDLLHDAARREARG 92
>At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1,
putative / snRNP core protein D1, putative / Sm protein
D1, putative similar to small nuclear ribonucleoprotein
Sm D1 (snRNP core protein D1, Sm-D1, Sm-D autoantigen)
[Mouse] SWISS-PROT:P13641
Length = 116
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L N + +ELKNG +G + D MN +L+ V T + G + +RG+ I
Sbjct: 7 LMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 65
Query: 67 KYLRIPDEV---IDMVKEETQVKAR----GRNEVSKGRGQ 99
+Y +PD + +V++ ++K + G+ +GRG+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGR 105
>At3g07590.1 68416.m00909 small nuclear ribonucleoprotein D1,
putative / snRNP core protein D1, putative / Sm protein
D1, putative similar to SWISS-PROT:SP|P13641 small
nuclear ribonucleoprotein Sm D1 (snRNP core protein D1,
Sm-D1, Sm-D autoantigen)[Mouse]
Length = 114
Score = 37.1 bits (82), Expect = 0.004
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L N + +ELKNG +G + D MN +L+ + S G + +RG+ I
Sbjct: 7 LMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLK-TVKMSLKGKNPVTLDHLSLRGNNI 65
Query: 67 KYLRIPDEV---IDMVKEETQVKAR---GRNEVSKGRGQ 99
+Y +PD + +V++ +VK + V +GRG+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR 104
>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein,
putative / Sm protein F, putative similar to
SWISS-PROT:Q9Y4Y8 U6 snRNA-associated Sm-like protein
LSm6 [Mus musculus]
Length = 91
Score = 36.7 bits (81), Expect = 0.006
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L++ + P++V+L +G Y G L D +MNI + + +G + + +IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
Query: 63 GSTIKYL 69
G+ + Y+
Sbjct: 74 GNNVLYI 80
>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
putative / snRNP-F, putative / Sm protein F, putative
similar to SWISS-PROT:Q15356 small nuclear
ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
[Mouse]
Length = 88
Score = 34.7 bits (76), Expect = 0.023
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L ++V+LK G Y G L S D++MN+ L DG + E IR
Sbjct: 8 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTE-EYIDGQLTGNLGEILIR 66
Query: 63 GSTIKYLR-IPDE 74
+ + Y+R +P++
Sbjct: 67 CNNVLYVRGVPED 79
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein,
putative / Sm protein F, putative similar to
SWISS-PROT:Q9Y4Y8 U6 snRNA-associated Sm-like protein
LSm6 [Mus musculus]
Length = 91
Score = 34.3 bits (75), Expect = 0.031
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L++ + P++V+L +G Y G L D +MNI + + +G + ++R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTE-EYVNGQLKNTYGDAFVR 73
Query: 63 GSTIKYL 69
G+ + Y+
Sbjct: 74 GNNVLYI 80
>At4g03960.1 68417.m00559 tyrosine specific protein phosphatase
family protein contains tyrosine specific protein
phosphatases active site, PROSITE:PS00383
Length = 198
Score = 30.3 bits (65), Expect = 0.50
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSC 32
L +L +NHP+L+ K+G+ G LV C
Sbjct: 111 LQVLLDTENHPVLIHCKSGKHRTGCLVGC 139
>At1g05000.1 68414.m00501 tyrosine specific protein phosphatase
family protein contains tyrosine specific protein
phosphatases active site, PROSITE:PS00383
Length = 215
Score = 29.9 bits (64), Expect = 0.66
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+ L +L +NHP+L+ K G+ G LV C + + C + D++ R
Sbjct: 133 MALKVLLDEKNHPVLIHCKRGKHRTGCLVGC-----LRKLQKWCLTSIFDEYQRFAAAKA 187
Query: 62 RGSTIKYLRIPD 73
R S +++ I D
Sbjct: 188 RVSDQRFMEIFD 199
>At2g32960.1 68415.m04040 tyrosine specific protein phosphatase
family protein contains Pfam profile PF03162: Putative
tyrosine phosphatase family
Length = 257
Score = 29.5 bits (63), Expect = 0.87
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSC 32
L +L +NHP+L+ K G+ G LV C
Sbjct: 177 LKVLLDEKNHPLLIHCKRGKHRTGCLVGC 205
>At3g02800.1 68416.m00272 tyrosine specific protein phosphatase
family protein contains tyrosine specific protein
phosphatases active site, PROSITE:PS00383
Length = 199
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSC 32
L +L +NHP+L+ K G+ G LV C
Sbjct: 93 LKVLVDVRNHPILIHCKRGKHRTGCLVGC 121
>At5g16480.1 68418.m01926 tyrosine specific protein phosphatase
family protein contains tyrosine specific protein
phosphatases active site, PROSITE:PS00383
Length = 204
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSC 32
L +L +NHP+L+ K G+ G LV C
Sbjct: 96 LRVLVDVRNHPILIHCKRGKHRTGCLVGC 124
>At5g44980.1 68418.m05516 F-box family protein contains F-box domain
Pfam:PF00646
Length = 435
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 29 LVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPD 73
L SC N N+ L + R+ F +P+C I ST++Y+ I +
Sbjct: 336 LESCPNLKNLILEYNVELDREQVDFTNVPQCLI--STLEYVEIKE 378
>At3g18295.1 68416.m02327 expressed protein
Length = 216
Score = 27.5 bits (58), Expect = 3.5
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 2 LPLSLLRTAQNHPMLVELKNG-ETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE 58
L L L+ A N P L L NG + NG +V+ N+ R C GD R+ E
Sbjct: 65 LRLDLVYDA-NRPKLSVLGNGGDNNNGDVVAAARPWNLRTRRAACNEPPGDDSTRIIE 121
>At1g08750.3 68414.m00974 GPI-anchor transamidase, putative
similar to SP|P49018 GPI-anchor transamidase (EC
3.-.-.-) (GPI transamidase) {Saccharomyces cerevisiae};
contains Pfam profile PF01650: Peptidase C13 family
Length = 388
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 39 NLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE-VIDMVKEETQVKAR 88
N ++CTSR + M T+K L IPDE +I M+ ++ AR
Sbjct: 27 NWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNAR 77
>At1g08750.2 68414.m00973 GPI-anchor transamidase, putative
similar to SP|P49018 GPI-anchor transamidase (EC
3.-.-.-) (GPI transamidase) {Saccharomyces cerevisiae};
contains Pfam profile PF01650: Peptidase C13 family
Length = 388
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 39 NLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE-VIDMVKEETQVKAR 88
N ++CTSR + M T+K L IPDE +I M+ ++ AR
Sbjct: 27 NWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNAR 77
>At1g08750.1 68414.m00972 GPI-anchor transamidase, putative
similar to SP|P49018 GPI-anchor transamidase (EC
3.-.-.-) (GPI transamidase) {Saccharomyces cerevisiae};
contains Pfam profile PF01650: Peptidase C13 family
Length = 388
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 39 NLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE-VIDMVKEETQVKAR 88
N ++CTSR + M T+K L IPDE +I M+ ++ AR
Sbjct: 27 NWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNAR 77
>At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related
/ snRNP-related contains similarity to snRNP-associated
polypeptide N [Rattus norvegicus] GP|206694|gb|AAA42059
Length = 112
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVI 44
P+S LR MLV +K+G + G+ D NI L++ +
Sbjct: 23 PISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTV 64
>At1g78760.1 68414.m09179 F-box family protein contains F-box domain
Pfam:PF00646
Length = 452
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 29 LVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRI 71
L SC N ++ + + DGD+ +P C+ +T++Y++I
Sbjct: 342 LQSCPNVKSLVVEFKDSSKEDGDRVLSIPRCFF--TTLEYVKI 382
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,384
Number of Sequences: 28952
Number of extensions: 103075
Number of successful extensions: 226
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 21
length of query: 139
length of database: 12,070,560
effective HSP length: 74
effective length of query: 65
effective length of database: 9,928,112
effective search space: 645327280
effective search space used: 645327280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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