Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001824-TA|BGIBMGA001824-PA|undefined
         (269 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59020.1 68418.m07393 expressed protein                             35   0.050
At3g19370.1 68416.m02457 expressed protein                             31   0.81 
At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family pr...    30   1.4  
At1g28650.1 68414.m03528 lipase, putative strong similarity to l...    29   2.5  
At5g48205.1 68418.m05955 hypothetical protein                          29   4.3  
At3g28770.1 68416.m03591 expressed protein                             29   4.3  
At2g22795.1 68415.m02704 expressed protein                             29   4.3  
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca...    29   4.3  
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca...    29   4.3  
At3g51220.1 68416.m05607 expressed protein contains Pfam doamin ...    28   5.7  
At4g01350.1 68417.m00175 DC1 domain-containing protein contains ...    28   7.6  
At3g22020.1 68416.m02778 receptor-like protein kinase-related co...    28   7.6  
At2g47310.1 68415.m05906 flowering time control protein-related ...    28   7.6  

>At5g59020.1 68418.m07393 expressed protein
          Length = 780

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 123 DIEKTTKAETRRHGTDTRKLKIKSLNCAELDCNNTQDSEYVWDKHTRVNSWSLSMGINGR 182
           ++E  +KA+  RH    + L  ++ N  + +    Q  E    K +      +  G+ G 
Sbjct: 180 NMEVKSKADVSRHRKSEKNLHERNRNEHDGELGRKQHGEAKTCKRSSNRKVRVVHGVEGD 239

Query: 183 YCT-HTCPTSCPDSYDPQCAISQTGQKKVFANHCKMDYNSCL 223
           YCT H+CP  C  + D   A S+ G          ++ + C+
Sbjct: 240 YCTQHSCPLPC--NADGCLAESKLGSTDADQKKVSVELSQCV 279


>At3g19370.1 68416.m02457 expressed protein 
          Length = 704

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 26  PKNNSDVFVTYEGHAEVNEKAMTDVKLTPNVGDATDAPNVTDDVIFVPNSAERNVDRFNI 85
           P  + ++ +  +   E+ + A+   +  P V D  +       V+    + +  + +  +
Sbjct: 356 PCGSKEMKLLMDDFNEMEKLAIVCTEKDPRVDDEKEGSFDWIQVVLSAITKQERISKRGV 415

Query: 86  DEIIT--KKTIGDFLERQNVNFETEAPKDVLFIKAKNNEDIEKTTKAETRRHGTDTRKLK 143
            E++   K  +G   E  NV    +  +D L I  K+N +    TK E +RH   T+  K
Sbjct: 416 KELLQDIKIALGCMDENDNVE-RKKGEEDPLCITWKSNNESGPMTKDEIKRHLGLTKSDK 474

Query: 144 IKSLNCAE 151
           ++ +   E
Sbjct: 475 VEKIESDE 482


>At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 223

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 71  FVPNSAERNVDRF-NIDEIITKKTIGDFLERQNVNF-ETEAPKDVLFIKAKNNEDIEKTT 128
           F PN    N  R  N +E  +K+      E + +N  ET+ PKDV+ ++AK  +  +  +
Sbjct: 57  FFPNLLHGNTRRKGNKEESGSKRRRKRSEEEEAMNGDETQKPKDVVHVRAKRGQATDSHS 116

Query: 129 KAETRRHGTDTRKLK 143
            AE  R      +LK
Sbjct: 117 LAERVRREKINERLK 131


>At1g28650.1 68414.m03528 lipase, putative strong similarity to
           lipase [Arabidopsis thaliana] GI:1145627
          Length = 385

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 149 CAELDCNNTQD-SEYV-WDKH--TRVNSWSLSMGI-NGRYCTHTCPTSCPDSYD 197
           C E   +  Q+ SEYV WD +  T      ++ G+ NGRY T     SC  SYD
Sbjct: 329 CGENGVSYCQNPSEYVNWDGYHLTEATYQKMAQGLLNGRYTTPAFDWSCLGSYD 382


>At5g48205.1 68418.m05955 hypothetical protein
          Length = 191

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 137 TDTRKLKIKSLNCAELDCNNTQDSEYVWDKHTRVNSWSLSMGING-RYCTHTCP-TSCPD 194
           T  R L++  L+      N  +DS   WDKH        S   N  +     CP +SC  
Sbjct: 27  TCDRCLQVLCLDHCSYMLNPDEDSNITWDKHVNDTDCDPSNYENDVKKKKKQCPVSSCSG 86

Query: 195 SYDPQCAISQT 205
             +P  +IS T
Sbjct: 87  PKEPDSSISST 97


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 55  NVGDATDAPNVTDD--VIFVPNSAE---RNVDRFNIDEIITKKTIGDFLERQNVNFETEA 109
           NVG+  D+ ++ DD  V    N  E   +  +    ++  + K + DF    +++ +  +
Sbjct: 851 NVGNKEDSKDLKDDRSVEVKANKEESMKKKREEVQRNDKSSTKEVRDFANNMDIDVQKGS 910

Query: 110 PKDVLFIKAK----NNEDIEKTTKAETRRHGTDTRKLKIKSLNCAELDCNNTQDSEYV 163
            + V + K +    N E+ + T    +++ G D +K K +S N + +        EYV
Sbjct: 911 GESVKYKKDEKKEGNKEENKDTINTSSKQKGKDKKKKKKESKN-SNMKKKEEDKKEYV 967


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 99  ERQNVNFETEAPKDVLFIKAKNNEDIEKTTKA---ETRRHGTDTRKLKIKSLNCAELDCN 155
           E + +  E  AP++    K K NE IEK   A   ET+   T+T++ +  S N ++ + N
Sbjct: 581 ENEKIEKEESAPQEET--KEKENEKIEKEESASQEETKEKETETKEKEESSSNESQENVN 638

Query: 156 NTQDSE 161
              + +
Sbjct: 639 TESEKK 644


>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 759

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 37  EGHAEVNEKAMTDVKLT-PNVGDATDAPNVTDDVIFVPNSAERNVDRFNIDEIITKKTIG 95
           E H +  E  +    LT P++  +T   + T + +    +    +      E++T+K  G
Sbjct: 541 ENHRKEKESLLGHRVLTSPSIASSTSESSATSETVETLRAKLNELRGLTARELVTRKDFG 600

Query: 96  DFLERQNVNFE--TEAPKDVLFIKAKNNEDIEKTTKAETRRHGTDTRKLKIKSL 147
             L     +FE  + AP   +   AK    I++  +A  R H    R   +K +
Sbjct: 601 QILITA-ASFEELSSAPISYISRLAKYRNVIKEGLEASERVHIAQVRAKMLKEV 653


>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 755

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 37  EGHAEVNEKAMTDVKLT-PNVGDATDAPNVTDDVIFVPNSAERNVDRFNIDEIITKKTIG 95
           E H +  E  +    LT P++  +T   + T + +    +    +      E++T+K  G
Sbjct: 537 ENHRKEKESLLGHRVLTSPSIASSTSESSATSETVETLRAKLNELRGLTARELVTRKDFG 596

Query: 96  DFLERQNVNFE--TEAPKDVLFIKAKNNEDIEKTTKAETRRHGTDTRKLKIKSL 147
             L     +FE  + AP   +   AK    I++  +A  R H    R   +K +
Sbjct: 597 QILITA-ASFEELSSAPISYISRLAKYRNVIKEGLEASERVHIAQVRAKMLKEV 649


>At3g51220.1 68416.m05607 expressed protein contains Pfam doamin
           PF05701: Plant protein of unknown function (DUF827)
          Length = 186

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 44  EKAMTDVKLTPNVGDATDAPNVTDDVIFVPNSAER---NVDRFNIDEIITKKTIGDFLE- 99
           E   T  KL  ++ +  + P V DD+ F+  S      N+    ++     +  GD LE 
Sbjct: 76  ELETTKEKLNHSLRNFPEHPQVEDDLKFIEESTVNEPDNITEIKMNRFDRNEVYGDRLEK 135

Query: 100 RQNVNFETE--APKDVLFIKAKNNEDIEKTTK 129
           R++V F       K ++  + KN   ++K TK
Sbjct: 136 RRSVKFANPPLLTKVIVGKEEKNQVMVKKQTK 167


>At4g01350.1 68417.m00175 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 158 QDSEYVWDKHTRVNSWSLSMGINGRYCTHTCP 189
           +D  ++ D+H R  +    +G    YC  TCP
Sbjct: 381 KDDVFIHDEHKRCAACIHPLGFGSIYCCETCP 412


>At3g22020.1 68416.m02778 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function; weak similarity to receptor-like protein
           kinase 5 (GI:13506747) [Arabidopsis thaliana]; weak
           similarity to receptor-like protein kinase homolog
           RK20-1 (GI:4530126) [Phaseolus vulgaris]
          Length = 223

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 206 GQKKVFAN-HCKMDYNSCLYGVAWYMRPLSECVGGKK 241
           G+ K++A   C +D   C   + W ++ LS+C  GK+
Sbjct: 166 GKNKLYAMVQCTLDIFHCKVCLEWSIKELSKCCEGKQ 202


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 123 DIEKTTKAETRRHGTDTRKLKIKSLNCAELDCNNTQDSEYVWDKHTRVN 171
           + EK  K+ET    T +   KI S + A  +  NT  SE  W +HT  N
Sbjct: 366 NFEKHQKSETASVETRSDGQKISSHSNAFHEDQNTVSSECDWSEHTCPN 414


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,884,231
Number of Sequences: 28952
Number of extensions: 299018
Number of successful extensions: 690
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 16
length of query: 269
length of database: 12,070,560
effective HSP length: 80
effective length of query: 189
effective length of database: 9,754,400
effective search space: 1843581600
effective search space used: 1843581600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)