Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001821-TA|BGIBMGA001821-PA|undefined
         (161 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   5.1  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      20   8.8  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    20   8.8  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
          homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 48 NCITESNDGDANTALQPSNVTTVI 71
          N   + +D D   +L PS+  TV+
Sbjct: 41 NITVDDDDTDGRESLSPSSAHTVL 64


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 93  PLTPVDGAAKPANEAAGSADSG 114
           P T V+ +A    E AG AD G
Sbjct: 129 PCTGVEESAVIPQEIAGYADEG 150


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 26  QFTNLSDVRIKATTLGATVR 45
           Q  NL    +K   LGATVR
Sbjct: 109 QMRNLEPEFLKLDQLGATVR 128


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,444
Number of Sequences: 317
Number of extensions: 569
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 161
length of database: 114,650
effective HSP length: 52
effective length of query: 109
effective length of database: 98,166
effective search space: 10700094
effective search space used: 10700094
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.8 bits)
S2: 40 (20.2 bits)