GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001821-TA|BGIBMGA001821-PA|undefined
         (161 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    29   1.5  
At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein ...    27   4.6  
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ...    27   8.0  

>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 14  EINAHTKSKQFSQFTNLSDVRIKATTLGATVRGANCITESNDGDANTALQPSN 66
           E+   T  + FS F++ SD R+         RG   ++  N  DA TA+   N
Sbjct: 154 EVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 206


>At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 462

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 3   WLPETKILIYVE--INAHTKSKQFSQFTNLSDVRIKATTLGATVRGANCITESND 55
           WL +   +  +E  +  H   +   +F +  D  +KA  L AT + A C  + N+
Sbjct: 250 WLKKDSPICQIERILKVHNTQRTIQRFEDCRDA-VKARALQATRKDARCAADGNE 303


>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 426

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 24  FSQFTNLSDVRIKATTLGATVRGANCITESNDGDANTALQPSN 66
           FS F + SD R+         RG   ++  N  DA TA+   N
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 210


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,423
Number of Sequences: 28952
Number of extensions: 58168
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 3
length of query: 161
length of database: 12,070,560
effective HSP length: 76
effective length of query: 85
effective length of database: 9,870,208
effective search space: 838967680
effective search space used: 838967680
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 56 (26.6 bits)