Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001819-TA|BGIBMGA001819-PA|undefined
         (188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.57 
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    28   0.99 
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        27   2.3  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   2.3  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.3  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   5.3  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   7.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   7.0  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   7.0  

>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 73  LLRDSPNICHPEFGTKWGWSKLTGKFESYKEII 105
           LL+   ++ +PE  TKWGWS L  +F+   E+I
Sbjct: 518 LLKTDGSLLNPEL-TKWGWSNL--QFDVLNELI 547


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 110 LEKIREELDTLLKRSKDGEKWEKTEGSSKFIITTVRSLIELLE 152
           +EK  +EL +  KR+K   KW   +  S+ +  T  +++E LE
Sbjct: 166 VEKTFQELSSKRKRTKLQPKWATDDAVSQLLQATPSTILENLE 208


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 93  KLTGKFESYKEIIKFYKLEK 112
           KL GK+ES  +IIKF KL K
Sbjct: 133 KLLGKWESKLKIIKFNKLAK 152


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 93  KLTGKF-ESYKEIIKFYK-LEKIREELDTLLKRSKDGEKWEKTEGSSKFIITTVRSLIEL 150
           KL   F E  KE  + YK LEK R +L++LLK  +  E  EK  G    I   + SL +L
Sbjct: 303 KLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRR--ELLEKLTGDLGKIQGEIESLEKL 360


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/24 (37%), Positives = 19/24 (79%)

Query: 105 IKFYKLEKIREELDTLLKRSKDGE 128
           ++F+KL ++R+ ++TL + +KD E
Sbjct: 385 MRFHKLSEVRQHVNTLKEATKDDE 408


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 99  ESYKEIIKFYKLEKIREELD---TLLKRSKDGEKWEK-TEGSSKFIITTVRSLI 148
           ESY+E++  +KL + R + D   T L ++  GE   K TE S + I    R  I
Sbjct: 732 ESYRELLNRWKLYRERAKFDIFRTELSKNHTGEITRKATEPSIRIICNFCRKPI 785


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 107 FYKLEKIREELDTLLKRSKDGEKWEKTEGSSKFIITTVRSLIELLEPFFS 156
           F  L +I E LDTL   S D    +  +G    +I     L+ L+E + S
Sbjct: 291 FDALPQIDELLDTLSTTSPDAADDDALQGKYHAMIALRPKLVRLIEKYAS 340


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 32  IQGHRKYHAKHGKT 45
           + GHR + AKHG T
Sbjct: 397 VDGHRNHEAKHGNT 410


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 101 YKEIIKFYKLEKIREELDTLLKRSKD-GEKWEKTEGSSKFIITTVRSLIELLEPFFS 156
           +++II  YK+  + EE +   K SK+  ++WE  +   K     +++L  +L+ F S
Sbjct: 268 FRDIIPGYKIRPLSEE-EQGTKLSKEVAQRWEYEQTLLKHYAKFLQTLETILKSFSS 323


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 866,806
Number of Sequences: 5004
Number of extensions: 35475
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 9
length of query: 188
length of database: 2,362,478
effective HSP length: 69
effective length of query: 119
effective length of database: 2,017,202
effective search space: 240047038
effective search space used: 240047038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)