Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001817-TA|BGIBMGA001817-PA|IPR007087|Zinc finger,
C2H2-type, IPR012934|Zinc finger, AD-type
         (622 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    44   3e-06
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    33   0.006
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    33   0.006
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    33   0.006
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.89 
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    25   2.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   3.6  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   6.3  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 44.0 bits (99), Expect = 3e-06
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 178 CDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCTAEYKLVTTYDEHFKNDCIPFDEVPDV 237
           C+ C   FV      RH ++HT G  PY C  C+ ++        H     I  +E P  
Sbjct: 193 CEHCDRQFVQVANLRRHLRVHT-GERPYGCEHCSMKFSDSNQLKAHV---LIHTNEKP-F 247

Query: 238 KCEDCWRYFATDNLLIQHNCAGED 261
           +C+ C   F   + L+ H C GE+
Sbjct: 248 ECDKCRGRFRRRHHLVHHKCGGEE 271



 Score = 37.9 bits (84), Expect = 2e-04
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 178 CDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCTAEYKLVTTYDEHFKNDCIPFDEVPDV 237
           C  C   F        H +LHT G  PY+C  C  ++  V     H +   +   E P  
Sbjct: 165 CQECHKRFTRDHHLKTHMRLHT-GERPYRCEHCDRQFVQVANLRRHLR---VHTGERP-Y 219

Query: 238 KCEDCWRYFATDNLLIQH 255
            CE C   F+  N L  H
Sbjct: 220 GCEHCSMKFSDSNQLKAH 237


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 33.1 bits (72), Expect = 0.006
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 178 CDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCTAEYKLVTTYDEHFK 225
           C  C   F        H +LHT G  PY+C  C  ++  V     H +
Sbjct: 12  CQECHKRFTRDHHLKTHMRLHT-GERPYRCEHCDRQFVQVANLRRHLR 58



 Score = 30.7 bits (66), Expect = 0.031
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 178 CDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCT 211
           C+ C   FV      RH ++HT G  PY C  C+
Sbjct: 40  CEHCDRQFVQVANLRRHLRVHT-GERPYGCEHCS 72


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 33.1 bits (72), Expect = 0.006
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 178 CDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCTAEYKLVTTYDEHFKNDCIPFDEVPDV 237
           C  C   F  S     H + H SG  PY+C  C   +   +T  +H +   I   E P  
Sbjct: 52  CPVCDRRFSQSSSVTTHMRTH-SGERPYRCRLCKKAFSDSSTLTKHLR---IHSGEKP-Y 106

Query: 238 KCEDCWRYFATDNLLIQH 255
           +C+ C   F+    L +H
Sbjct: 107 ECKLCLLRFSQSGNLNRH 124


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 33.1 bits (72), Expect = 0.006
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 178 CDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCTAEYKLVTTYDEHFKNDCIPFDEVPDV 237
           C  C   F  S     H + H SG  PY+C  C   +   +T  +H +   I   E P  
Sbjct: 308 CPVCDRRFSQSSSVTTHMRTH-SGERPYRCRLCKKAFSDSSTLTKHLR---IHSGEKP-Y 362

Query: 238 KCEDCWRYFATDNLLIQH 255
           +C+ C   F+    L +H
Sbjct: 363 ECKLCLLRFSQSGNLNRH 380


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.8 bits (54), Expect = 0.89
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 140 LKQLKCDSDEDSLLVPRVKRIREVKLDIFPKSKKVRLACDACRVWFVDSIEAARHKQLHT 199
           +K  KC    D + + ++++    K+ I    +  RL C  C            H + H 
Sbjct: 199 IKTFKCKQC-DFVAITKLEQWNHSKVHI---REDKRLTCPKCPFITEYKHHLEYHLRNH- 253

Query: 200 SGSLPYKCHRCTAEYKLVTTYDEHFKNDCIPFDEVPDVKCEDC 242
           +GS P++C++C       +  + H K+       V    C DC
Sbjct: 254 AGSKPFQCNKCDYTCVNKSMLNSHMKS----HSNVYRYSCRDC 292


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 338 MVNITQDITDVFDSDTEISRWDSDNNSNGTSKVKTSNLTAKPKLSNEIEAHGKS-DAFDA 396
           MV    + TDV+  D     W+      G  + K + +T   +L + + A GK+  A  +
Sbjct: 122 MVQSVLNFTDVWGFDGFDLDWEYPCQRGGADEDKVNFVTLLGELKSALNAKGKTLSAAVS 181

Query: 397 ANDSEFDISSNINCIIDGLD 416
              +   +S +I  + + LD
Sbjct: 182 GGIASCKLSYDIAKVAENLD 201


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 13/56 (23%), Positives = 22/56 (39%)

Query: 156 RVKRIREVKLDIFPKSKKVRLACDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCT 211
           R  R  E++  +   + + R AC  C   F+ S   A+H + H           C+
Sbjct: 355 RFTRSDELQRHLRTHTGEKRFACPICNKRFMRSDHLAKHVKTHNGNGKKGSSDSCS 410


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 194 HKQLHTSGSLPYKCHRCTAEYKLVTTYDEHFKNDCIPFDEVPDVKCEDC 242
           H + H +GS P++C++C       +  + H K+       V    C DC
Sbjct: 7   HLRNH-AGSKPFQCNKCDYTCVNKSMLNSHMKS----HSNVYRYSCRDC 50


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,473
Number of Sequences: 317
Number of extensions: 5582
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 10
length of query: 622
length of database: 114,650
effective HSP length: 61
effective length of query: 561
effective length of database: 95,313
effective search space: 53470593
effective search space used: 53470593
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)