Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001813-TA|BGIBMGA001813-PA|IPR002937|Amine oxidase
(249 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62830.1 68414.m07093 amine oxidase family protein / SWIRM do... 61 8e-10
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do... 57 1e-08
At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM do... 56 3e-08
At4g29720.1 68417.m04232 amine oxidase family protein similar to... 53 2e-07
At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM do... 53 2e-07
At2g43020.1 68415.m05339 amine oxidase family protein similar to... 52 4e-07
At1g65840.1 68414.m07470 amine oxidase family protein similar to... 52 4e-07
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 50 1e-06
At3g59050.1 68416.m06582 amine oxidase family protein similar to... 48 6e-06
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ... 37 0.011
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa... 37 0.015
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00... 36 0.020
At2g33450.1 68415.m04100 50S ribosomal protein L28, chloroplast ... 33 0.18
At5g54700.1 68418.m06812 ankyrin repeat family protein contains ... 32 0.32
At3g26150.1 68416.m03262 cytochrome P450 71B16, putative (CYP71B... 29 3.0
At1g28240.1 68414.m03466 expressed protein 29 3.0
At5g28480.1 68418.m03462 hypothetical protein 28 5.2
At3g52830.1 68416.m05821 hypothetical protein MobA, Pseudomonas ... 28 6.8
At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,... 28 6.8
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 27 9.0
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 27 9.0
At1g27080.1 68414.m03301 proton-dependent oligopeptide transport... 27 9.0
>At1g62830.1 68414.m07093 amine oxidase family protein / SWIRM
domain-containing protein contains Pfam profile: PF01593
Flavin containing amine oxidase
Length = 844
Score = 60.9 bits (141), Expect = 8e-10
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 9/108 (8%)
Query: 58 KRVEKL-PEDVVKRKIMEILRK-FLGKHFTIPEPVAMIRSDWHSNPFTRGSYTYDNVDAP 115
+R E L P D VKR +++ILR + K +P+PV + S W + F+ GSY+Y V +
Sbjct: 600 ERFETLSPTDSVKR-VLQILRGIYHPKGIVVPDPVQALCSRWGQDKFSYGSYSYVAVGSS 658
Query: 116 KYPDARIHLGEPLLDSAGKPRVLFAGEATDPTHFSTVHGATDTGYREA 163
D I L +S G RV FAGEAT+ + +T+HGA +G REA
Sbjct: 659 G-DDYDI-----LAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREA 700
>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
domain-containing protein low similarity to polyamine
oxidase isoform-1 [Homo sapiens] GI:14860862; contains
Pfam profiles PF01593: amine oxidase flavin-containing,
PF04433: SWIRM domain
Length = 1265
Score = 56.8 bits (131), Expect = 1e-08
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 34/175 (19%)
Query: 17 KIKAINSTSIGVVDKIVLSFERAWWPKGLSFFGFLWDENCLK-------RVEK------L 63
K +I GV++K+VL F +W + +FG +E L+ V+K L
Sbjct: 914 KYASIKQLGFGVLNKVVLEFPTVFWDDSVDYFGATAEETDLRGECFMFWNVKKTVGAPVL 973
Query: 64 PEDVVKRKIMEILRKFLGKHFT--------------IPEPVAMIRSDWHSNPFTRGSYTY 109
VV + E K +H +P+PVA + +DW + P++ G+Y+Y
Sbjct: 974 IALVVGKAAFEYTNKSKSEHVNHAMMVLRKLFGGDLVPDPVASVVTDWGTEPYSYGAYSY 1033
Query: 110 DNVDAPKYPDARIHLGEPLLDSAGKPRVLFAGEATDPTHFSTVHGATDTGYREAM 164
+ A D + LG P+ + + FAGEAT H TV GA TG REA+
Sbjct: 1034 VAIGA-SGEDYDV-LGRPVQNC-----LFFAGEATCKEHPDTVGGAMMTGVREAV 1081
>At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM
domain-containing protein contains Pfam profile: PF01593
Flavin containing amine oxidase
Length = 789
Score = 55.6 bits (128), Expect = 3e-08
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 64 PEDVVKRKIMEILRK-FLGKHFTIPEPVAMIRSDWHSNPFTRGSYTYDNVDAPKYPDARI 122
P D V R ++ ILR + + +P+P+ + + W +PF+ GSY+ V A D I
Sbjct: 523 PTDAVTR-VLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASG-DDYDI 580
Query: 123 HLGEPLLDSAGKPRVLFAGEATDPTHFSTVHGATDTGYREAMSPRQ 168
L +S G R+ FAGEAT + +T+HGA TG REA + Q
Sbjct: 581 -----LAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQ 621
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 16 KKIKAINSTSIGVVDKIVLSFERAWWPKGLSFFGFLWDE 54
+K+ I G+++K+ + F +W L FG L ++
Sbjct: 446 RKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTED 484
>At4g29720.1 68417.m04232 amine oxidase family protein similar to
polyamine oxidase isoform-2 [Homo sapiens] GI:16554963;
contains Pfam profile PF01593: amine oxidase,
flavin-containing
Length = 533
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 92 MIRSDWHSNPFTRGSYTY-------DNVDAPKYPDARIH--LGEPLLDSAGKP---RVLF 139
+++S W S+P RGSY+Y D++DA P +I+ +G+ K +V+F
Sbjct: 439 VLKSKWGSDPLFRGSYSYVAVGSSGDDLDAMAEPLPKINKKVGQVNGHDQAKVHELQVMF 498
Query: 140 AGEATDPTHFSTVHGATDTGYREA 163
AGEAT TH+ST HGA +G REA
Sbjct: 499 AGEATHRTHYSTTHGAYYSGLREA 522
>At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM
domain-containing protein similar to polyamine oxidase
isoform-1 [Homo sapiens] GI:14860862; contains Pfam
profile:PF01593 Flavin containing amine oxidase
Length = 746
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 58 KRVEKLPEDVVKRKIMEILRKFLG-KHFTIPEPVAMIRSDWHSNPFTRGSYTYDNVDAPK 116
+R E V+ ++++ LR G K +P+P+ + + W S+P + GSY++ V +
Sbjct: 491 QRFECTEPSVLLHRVLKKLRGIYGPKGVVVPDPIQTVCTRWGSDPLSYGSYSHVRVGSSG 550
Query: 117 YPDARIHLGEPLLDSAGKPRVLFAGEATDPTHFSTVHGATDTGYREA 163
+ +L + R+ FAGEAT H +T+HGA +G REA
Sbjct: 551 -------VDYDILAESVSNRLFFAGEATTRQHPATMHGAYLSGLREA 590
>At2g43020.1 68415.m05339 amine oxidase family protein similar to
polyamine oxidase SP:O64411 [Zea mays]; contains Pfam
profile PF01593 amine oxidase, flavin-containing
Length = 490
Score = 52.0 bits (119), Expect = 4e-07
Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 36/187 (19%)
Query: 17 KIKAINSTSIGVVDKIVLSFERAWWPK------------GLSFF------------GFLW 52
K +AIN +G+ +KI+L FE+ +WPK G S+F ++
Sbjct: 295 KQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMP 354
Query: 53 DENCLKRVEKLPEDVVKRKIMEILRKFLGKHFTIPEPVAMIRSDWHSNPFTRGSYTYDNV 112
K +EK+ ++ + L++ L +P PV + S W S+ + GSY+YD V
Sbjct: 355 AGQLAKDIEKMSDEAAANFAVLQLQRILPD--ALP-PVQYLVSRWGSDVNSMGSYSYDIV 411
Query: 113 DAPKYPDARIHLGEPLLDSAGKPRVLFAGEATDPTHFSTVHGATDTGYREAMSPRQMPLL 172
P D L P+ + FAGEAT + +VHGA TG A R M +L
Sbjct: 412 GKPH--DLYERLRVPV------DNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCR-MRVL 462
Query: 173 DKMPLLD 179
++ LD
Sbjct: 463 ERYGELD 469
>At1g65840.1 68414.m07470 amine oxidase family protein similar to
polyamine oxidase SP:O64411 [Zea mays]; contains Pfam
profile PF01593 amine oxidase, flavin-containing
Length = 497
Score = 52.0 bits (119), Expect = 4e-07
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 38/196 (19%)
Query: 17 KIKAINSTSIGVVDKIVLSFERAWWPKGLSFFG-------------------------FL 51
K AI+ +G +KI L F+RA+WP + F G ++
Sbjct: 297 KTSAISGLGVGNENKIALRFDRAFWPN-VEFLGMVAPTSYACGYFLNLHKATGHPVLVYM 355
Query: 52 WDENCLKRVEKLPEDVVKRKIMEILRKFLGKHFTIPEPVAMIRSDWHSNPFTRGSYTYDN 111
N + +EKL ++ +M L+K P+P + + W ++P T G Y YD
Sbjct: 356 AAGNLAQDLEKLSDEATANFVMLQLKKMFPD---APDPAQYLVTRWGTDPNTLGCYAYDV 412
Query: 112 VDAPKYPDARIHLGEPLLDSAGKPRVLFAGEATDPTHFSTVHGATDTGYREAMSPRQMPL 171
V P+ D LGEP+ + F GEA + H + HGA G A Q +
Sbjct: 413 VGMPE--DLYPRLGEPV------DNIFFGGEAVNVEHQGSAHGAFLAGV-SASQNCQRYI 463
Query: 172 LDKMPLLDKMPLLDKM 187
+++ +K+ L+ M
Sbjct: 464 FERLGAWEKLKLVSLM 479
>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 370
Score = 50.0 bits (114), Expect = 1e-06
Identities = 41/83 (49%), Positives = 49/83 (59%), Gaps = 9/83 (10%)
Query: 168 QMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLY--KMPLLDKMPLLYKMPLIYKMPL 225
Q P L KMP L KMP + K P L K+P E+P L K+P + K P L KMP + KMP
Sbjct: 217 QKPELPKMPELPKMPEIQK-PELPKLP---EVPKLEAPKVPEIQK-PELPKMPELPKMPE 271
Query: 226 IYKMPLLYKMPLLYKMPLPDKMP 248
I K P L KMP + K LP K+P
Sbjct: 272 IQK-PELPKMPEIQKPELP-KVP 292
>At3g59050.1 68416.m06582 amine oxidase family protein similar to
polyamine oxidase (EC 1.5.3.11) precursor - Zea mays
[SP|O64411]; contains Pfam profile PF01593 amine
oxidase, flavin-containing
Length = 488
Score = 48.0 bits (109), Expect = 6e-06
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 31/177 (17%)
Query: 17 KIKAINSTSIGVVDKIVLSFERAWWPKGLSFFGFLWDEN--C-----LKRVEKLPEDV-- 67
K +AIN +G+ +KI+L+F+ +WP + F G + + + C L + P V
Sbjct: 296 KQEAINDLGVGIENKIILNFDNVFWPN-VEFLGVVAETSYGCSYFLNLHKATSHPVLVYM 354
Query: 68 --------VKRKIMEILRKFLGKHFT--IPE---PVAMIRSDWHSNPFTRGSYTYDNVDA 114
+++K E F +P+ P+ + S W S+ + GSY+YD V+
Sbjct: 355 PAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPINYLVSRWGSDINSLGSYSYDIVNK 414
Query: 115 PKYPDARIHLGEPLLDSAGKPRVLFAGEATDPTHFSTVHGATDTGYREAMSPRQMPL 171
P D L PL + FAGEAT ++ +VHGA TG A R L
Sbjct: 415 PH--DLYERLRVPL------DNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVL 463
>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
Zea mays
Length = 472
Score = 37.1 bits (82), Expect = 0.011
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 58 KRVEKLPEDVVKRKIMEILRKFLGKHFTIPEPVAMIRSDWHSNPFTRGSYTYDNVDAPKY 117
KRVE + ++ M +LR G TIP ++ W +N F RGSY+ Y
Sbjct: 331 KRVEAQSDQETMKEAMSVLRDMFGA--TIPYATDILVPRWWNNRFQRGSYS-------NY 381
Query: 118 PDARIHLGEPLLDSAGKP--RVLFAGEATDPTHFSTVHG 154
P + LL + P R+ F GE T VHG
Sbjct: 382 P---MISDNQLLQNIKAPVGRIFFTGEHTSEKFSGYVHG 417
>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
family protein contains Pfam profile PF01190: Pollen
proteins Ole e I family
Length = 401
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 170 PLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLL-----YKMPLLDKMPLLYKMPLIYKMP 224
P L PL+ P L +PL+ P L +PLL +P + +P L +P++ +P
Sbjct: 284 PTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLPPLPVLPPVP 343
Query: 225 LIYKMPLLYKMPLLYKMPLP 244
++ P L P + +PLP
Sbjct: 344 IV-NPPSLPPPPPSFPVPLP 362
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 184 LDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIYKMPLIYKMPLLYKMPLLYKMPL 243
L+ ++ PL+ +P P L PL+ P + +PLI P L +PLL P
Sbjct: 266 LNPPSIIPPNPLIPSIPT----PTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPT 321
Query: 244 PDKMPL 249
P P+
Sbjct: 322 PTLPPI 327
>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
F-box domain
Length = 435
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 189 LLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIYKMPLIYKMPLLYKMPLLYKMPLPDKMP 248
LLD+ + MP+ MP+ MP+ M + MP+ MP+ M + MP+P MP
Sbjct: 343 LLDQEHVHVLMPMPMPMPMPMPMPMHMHMHMHMPMPMAMPMPMPIAMAMPMPMPMPMPMP 402
Query: 249 L 249
+
Sbjct: 403 M 403
Score = 34.3 bits (75), Expect = 0.079
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 183 LLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIYKMPLIYKMPLLYKMPLLYKMP 242
LLD+ + MP+ MP+ MP+ M + MP+ MP MP+ MP+ MP
Sbjct: 343 LLDQEHVHVLMPMPMPMPMPMPMPMHMHMHMHMPMPMAMPMP----MPIAMAMPMPMPMP 398
Query: 243 LPDKM 247
+P M
Sbjct: 399 MPMPM 403
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 149 FSTVHGATDTGYREAMSPRQMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLL 208
+S+V G D + + P MP+ MP+ M + MP+ MP+ MP+ MP+
Sbjct: 337 WSSVIGLLDQEHVHVLMPMPMPMPMPMPMPMHMHMHMHMPMPMAMPM--PMPIAMAMPM- 393
Query: 209 DKMPLLYKMPL 219
MP+ MP+
Sbjct: 394 -PMPMPMPMPM 403
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 177 LLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIYKMPLIYKMPLLYKMP 236
LLD+ + MP+ MP+ MP+ M + MP+ MP+ M + MP+ MP
Sbjct: 343 LLDQEHVHVLMPMPMPMPMPMPMPMHMHMHMHMPMPMAMPMPMPIAMAMPMPMPMPMPMP 402
Query: 237 L 237
+
Sbjct: 403 M 403
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 171 LLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIYKMPLIYKMP 230
LLD+ + MP+ MP+ MP+ M + MP+ MP+ M + MP+ MP
Sbjct: 343 LLDQEHVHVLMPMPMPMPMPMPMPMHMHMHMHMPMPMAMPMPMPIAMAMPMPMPMPMPMP 402
Query: 231 L 231
+
Sbjct: 403 M 403
>At2g33450.1 68415.m04100 50S ribosomal protein L28, chloroplast
(CL28)
Length = 143
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 14 TGKKIKAINSTSIG-----VVDKIVLSFERAWWPKGLSFFGFLWDENCLKRVEKLPEDVV 68
TGKK N S + + L ++R WW G F LK +EK D V
Sbjct: 73 TGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAV 132
Query: 69 KRKIMEILRK 78
+K LRK
Sbjct: 133 AKKAGIDLRK 142
>At5g54700.1 68418.m06812 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 480
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 162 EAMSPRQMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIY 221
E SP ++ +D++ LL ++ LD+ D++ +DE+ LL ++ LD+ ++
Sbjct: 393 EQTSPDELTCVDELALLGELADLDEQTSPDELTCVDELALLGELADLDEQTSPDELTCAI 452
Query: 222 KMPLIYKMP 230
P + K+P
Sbjct: 453 LSPGLEKVP 461
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 168 QMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLI 220
++ LL K+ LD+M LD++ D++ LL E+ L + D++ + ++ L+
Sbjct: 357 ELALLAKLACLDEMSSLDELTCTDELALLGELADLDEQTSPDELTCVDELALL 409
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/80 (22%), Positives = 43/80 (53%)
Query: 168 QMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIYKMPLIY 227
+M LD++ D++ LL ++ LD+ DE+ + ++ LL ++ L + ++ +
Sbjct: 369 EMSSLDELTCTDELALLGELADLDEQTSPDELTCVDELALLGELADLDEQTSPDELTCVD 428
Query: 228 KMPLLYKMPLLYKMPLPDKM 247
++ LL ++ L + PD++
Sbjct: 429 ELALLGELADLDEQTSPDEL 448
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 180 KMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMPLIYKMPLIYKMPLLYKMPLLY 239
++ LL K+ LD+M LDE+ ++ LL ++ L + ++ + ++ LL ++ L
Sbjct: 357 ELALLAKLACLDEMSSLDELTCTDELALLGELADLDEQTSPDELTCVDELALLGELADLD 416
Query: 240 KMPLPDKM 247
+ PD++
Sbjct: 417 EQTSPDEL 424
>At3g26150.1 68416.m03262 cytochrome P450 71B16, putative (CYP71B16)
identical to cytochrome P450 71B16 (SP:Q9LTM7)
[Arabidopsis thaliana]; similar to cytochrome P450
GB:O65784 [Arabidopsis thaliana]
Length = 502
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 43 KGLSFFGFLWDENCLKRVEKLPEDVVKRKIMEILRKFLGKHFTIPEPVAMIRSDWHSNPF 102
K + +FG++ +E C V+KL E V R +++ + +I +A +S +H N F
Sbjct: 137 KKVQYFGYIVEEECNLLVKKLTESAVGRPPVDLSKSLFWLAASILFRIAFGQS-FHDNKF 195
>At1g28240.1 68414.m03466 expressed protein
Length = 581
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 115 PKYPDARIHLGEPLLDSAGKPRVLFAGEATDPTHFSTVHGATDTGYREAMSPRQMP 170
P +P P+L S+ PR + +G AT P + G+R+A P ++P
Sbjct: 523 PNFPPPPPSPPPPVLISSDLPRKMSSGRATPPRRRGRDRRSGQRGHRKANLPVRLP 578
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 54 ENCLKRVEKL--PEDVVKRKIMEILRKFLGKHFTIPEPVAMIRSDWHSNPFTRGSYTYDN 111
EN K EK+ PE+V+ + ++L + + + IPE V+++ S H N TR +Y+
Sbjct: 862 ENVSKIPEKVAVPEEVLTQLKDDVLEEKVSEKVAIPEEVSIL-SRVHINISTRRAYSTGK 920
Query: 112 VD 113
D
Sbjct: 921 ED 922
>At3g52830.1 68416.m05821 hypothetical protein MobA, Pseudomonas
alcaligenes, EMBL:PAU88088
Length = 86
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 168 QMPLLDKMPLLDKMPLLDKMPLLDKMPLLDEMPLLYKMPLLDKMPLLYKMP 218
++ LL K+ LD M L ++ +D+ DE+ L ++ LD++ L P
Sbjct: 10 ELALLAKLACLDGMSSLYELTCIDERTCPDELNCLDELTCLDELTCLVLSP 60
>At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,
putative contains similarity to SWISS-PROT:Q9UFF9
CCR4-NOT transcription complex, subunit 8 (CAF1-like
protein, CALIFp) [Human]
Length = 302
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 54 ENCLKRVEKLPEDVVKRKIMEILRKFLGKHFTIPEPVAMIRSDWHSNPFTRGSY 107
+ C++RV+ + ++++M + R ++ IP P +++ + H NP+ G Y
Sbjct: 238 KQCVRRVDHQQYQLEQQQLM-MTRCYIPIPIPIPRPRSVMFAAHHPNPYFGGGY 290
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 1 MVALAGSDAFRITTGKKIKAINSTSIGVVD-KIVLSFERAWWPKGLSFFGFLWDENC-LK 58
+VA+ G D G + N +IG + + SF AW P G++F D+ C +
Sbjct: 291 LVAVVGDDP----DGLLVDTSNGQTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIW 346
Query: 59 RVEKLPEDVVKRK 71
KL E V K
Sbjct: 347 DTRKLSESVAVLK 359
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 1 MVALAGSDAFRITTGKKIKAINSTSIGVVD-KIVLSFERAWWPKGLSFFGFLWDENC-LK 58
+VA+ G D G + N +IG + + SF AW P G++F D+ C +
Sbjct: 285 LVAVVGDDP----DGLLVDTSNGQTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIW 340
Query: 59 RVEKLPEDVVKRK 71
KL E V K
Sbjct: 341 DTRKLSESVAVLK 353
>At1g27080.1 68414.m03301 proton-dependent oligopeptide transport
(POT) family protein similar to nitrate transporter
NRT1-5 [Glycine max] GI:11933414; contains Pfam profile
PF00854: POT family
Length = 525
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 132 AGKPRVLFAGEATDPTHFSTVHGATDTGYREAMSPRQMPLLDKMPLLDKMPLLDKMPLL 190
+G RV+ A S V T+ Y + P +L K+PL D+ LDK ++
Sbjct: 188 SGIARVIVAARKKRDLKISLVDDGTEEYYEPPVKPG---VLSKLPLTDQFKFLDKAAVI 243
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.141 0.438
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,298,712
Number of Sequences: 28952
Number of extensions: 293589
Number of successful extensions: 648
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 44
length of query: 249
length of database: 12,070,560
effective HSP length: 79
effective length of query: 170
effective length of database: 9,783,352
effective search space: 1663169840
effective search space used: 1663169840
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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