GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001810-TA|BGIBMGA001810-PA|IPR001849|Pleckstrin-like,
IPR000648|Oxysterol-binding protein
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42737| Best HMM Match : PH (HMM E-Value=3.2e-10)                    36   0.095
SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16)                  33   0.51 
SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)                      33   0.51 
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.2  
SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)             32   1.2  
SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)                    31   2.0  
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.7  
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)          30   4.7  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)                 29   6.2  
SB_52112| Best HMM Match : PH (HMM E-Value=2.4e-14)                    29   6.2  
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   29   6.2  
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  29   6.2  
SB_27802| Best HMM Match : Filament (HMM E-Value=0.2)                  29   8.2  
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   8.2  
SB_35200| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.2  

>SB_42737| Best HMM Match : PH (HMM E-Value=3.2e-10)
          Length = 218

 Score = 35.5 bits (78), Expect = 0.095
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 33 PNYTGRVRGSLK--SWTKLWCVLKPGLLLLYKSPKAKSSHWVGTVLLTSCQVIERPSKKD 90
          P Y   +R  L+  +W + W VL+   LL + S  AK +  +     TSC V    +KK 
Sbjct: 12 PLYKDYLRKKLRKNTWKEYWVVLREHSLLFFNSSDAKFAGSIELTHGTSCAVFGTQNKKP 71

Query: 91 GF 92
          GF
Sbjct: 72 GF 73


>SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16)
          Length = 517

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 334 TSSRKRRSSTPGNMLRLNRSPVFRRSGARTDSENEDVPKKLLSDKRSEILCDTPDNILIT 393
           TS + + ++TP + ++       +  G    + N++VP+   SD  +EIL D P + +I 
Sbjct: 349 TSPKDKSTNTPIDGVKTKNIDSIQNPGT---ANNKEVPENKTSDATAEILTDQPVSEVI- 404

Query: 394 RTAPSVERFARCCSSTSDDEFQRNGDDVSRFNSTPEKYSLIDYVNSPSANL 444
              P+  R +   ++ S+D  + + D     +     ++L   V   S++L
Sbjct: 405 -PVPTTSRTSNAETAPSEDANRPSADSPQPSDPDDTAHALNSTVEDSSSDL 454


>SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)
          Length = 1030

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 35  YTGRVRGSLKSWTKLWCVLKPGLLLLYKSPKA 66
           Y  ++ G +K+W K W VL+ G L  +K+P A
Sbjct: 644 YLTKLGGRIKNWKKRWFVLQDGKLYYFKTPVA 675


>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 45  SWTKLWCVLKPGLLLLYKSPKAKSSHWVGTVLLTSCQVIERPSKKDGFCFK 95
           +W + W V+K   L  YK+     +   G + L +C+    P  K  FCFK
Sbjct: 101 AWKRKWVVVKDQRLYYYKTSFDPEAG--GVIHLDNCESTAAPEMKRKFCFK 149


>SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)
          Length = 487

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 339 RRSSTPGNMLRLNRSP-VFRRSGARTDSENEDVPKKLLSDKRSEILCDTPDNILITRTAP 397
           R  + PG  LR    P +  RS  R DS     P++  +D  S I  +TP+N LITR  P
Sbjct: 202 RSRAKPGKTLRSCVRPGMTLRSRTRNDSST---PRETRND--SSITRETPNNALITRDTP 256

Query: 398 SVERFARCCSSTSDDEFQR-NGDDVSRFNSTPEKYSL 433
           +    +R   + +D    R   +D +    TP   S+
Sbjct: 257 NDSSISR--ETPNDSSITRGTPNDFTITRETPNDSSI 291


>SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)
          Length = 734

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 29  HSSTPNYTGRVRGSLKSWTKLWCVLKPGLLLLYKSPKAKSSHWVGTVLLTSCQVIERPSK 88
           H     Y  +    +KSW + +CVLK G L  Y      ++  +G   L    + +  +K
Sbjct: 647 HPDCHGYLSKQGHKVKSWKRRYCVLKNGYLYYYSDMANNTA--LGVAKLLGFTLEKGENK 704

Query: 89  KDGFCFKLYHP 99
              FC+    P
Sbjct: 705 GKHFCYHANAP 715


>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 391 LITRTAPSVERFARCCSST----SDDEFQRNGDDVSRFNSTPEKYSLIDYVNSPSANLEM 446
           L+  T  S++ FA C +      +D +   N  D+S      E YSL+D  +S  AN   
Sbjct: 122 LLDETESSIDSFADCLNPPILLDNDKKADSNASDISNHEFAEEVYSLLD--DSIDANTSN 179

Query: 447 VTNEKRYDRLIAQN 460
             +E    R + Q+
Sbjct: 180 ADSEDEKPRSLPQS 193


>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
          Length = 1001

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 407 SSTSDDEFQRNGDDVSRFNSTPEKYSLIDYVNSPSANLEMVTNEKRYDRLIAQNVYVAGK 466
           S+++   FQ +G + S   +  E YS +DYVNS + NL   TN   Y       V+    
Sbjct: 296 SASAGMVFQHSGKNASTILN--EYYSRVDYVNS-TQNLTDTTNRTSYALYAYDAVWAIAH 352

Query: 467 IVN 469
           ++N
Sbjct: 353 VLN 355


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 354 PVFRRSGARTDSENEDVPKKL---LSDKRSEILCDTPDNILITRTAPSVERFARCCSSTS 410
           P+F      T     D+P  L   L D   E+     ++++ +RT  +V        +  
Sbjct: 526 PIFDLDDGHTLFSGIDLPDFLANGLGDLSHEVPNSLLEDVVKSRTMDNVNTSENKDKAKV 585

Query: 411 DDEFQRNGDDVSRFNSTPEKYSLIDYVNSPSANLEMVTNEK 451
           D+  Q++GD  S+     E YSL    +S   N E+  N K
Sbjct: 586 DNNNQQSGDKPSKGKDKKESYSLKKSGDSSRKNGEIEKNLK 626


>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 820

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 334 TSSRKRRSSTPGNMLRLNRSPVFRRSGARTDSENEDVPKKLLSDKRSEIL 383
           TSS + R STP   L  +R PV   S  + DS  E  P+ L   +R + L
Sbjct: 499 TSSDRSRGSTPSMDLLESRDPVTPSSHDQVDSFEEGYPRGLSIKERLKSL 548


>SB_52112| Best HMM Match : PH (HMM E-Value=2.4e-14)
          Length = 356

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 35  YTGRVRGSLKSWTKLWCVLKPGLLLLYKSPKAKSSHWVGTVLLTSCQVIERPSKKDGFCF 94
           Y  R+ G+  S  K WCV++ G L  YK+ K +++    T+ L    +  R   K+ F  
Sbjct: 273 YVHRLDGNALS--KRWCVIREGKLYCYKNIKDEATEL--TLELDGADIRAREEDKNKFII 328

Query: 95  KLYHPLEQSI 104
           ++    E+ I
Sbjct: 329 RVIKDNERLI 338


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 395 TAPSVERFARCCSSTSDDEFQRNGDDVSRFNSTPEKYSL-IDYVNSPSANLEMVTNEK 451
           T PS     +   S+S  +F+ NGD  +  + TP  Y L +   N  +++L M  +EK
Sbjct: 844 TPPSKNARPKTTESSSTQQFKNNGDSRTSASITPSPYMLKMIRENLSTSSLLMTPSEK 901


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 334 TSSRKRRSSTPGNMLRLNRSPVFRRSGARTDSENEDVPKKLLSDKRSEIL 383
           TSS + R STP   L  +R PV   S  + DS  E  P+ L   +R + L
Sbjct: 638 TSSDRSRGSTPSMDLLESRDPVTPSSHDQVDSFEEGYPRGLSIKERLKSL 687


>SB_27802| Best HMM Match : Filament (HMM E-Value=0.2)
          Length = 528

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 15/66 (22%), Positives = 30/66 (45%)

Query: 141 LDGLELALRCSNAMLRCSRSRPEETVASEAPATRTNISHEELEKHFNEHASKMAALSSCA 200
           ++   LA  C   +++  R   E+T         + I  E+L++  N+  S   +L++ A
Sbjct: 185 INSFNLAANCDEKLMKLEREIREKTARITELEEDSRIEMEQLQEKLNQERSAKESLAAEA 244

Query: 201 SPLMST 206
              M+T
Sbjct: 245 DSCMAT 250


>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 331 KLVTSSRKRRSSTPGNMLRLNRSPVFRRSGART 363
           K  + SR+ RS +PG     +RSP  RR+ AR+
Sbjct: 130 KSSSPSRRARSRSPGRRRSRSRSPARRRTAARS 162


>SB_35200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 98  HPLEQSIWAPRGPHNETIGAVIQPLPTAHLIFRAPSQAAGHCWLDGLELAL 148
           +P++ +I     P    IG  + P+ T   ++  P QAA   WL+ ++ A+
Sbjct: 2   NPIQTAIGVWLNPIQTAIGVWLNPIKTVIGVWLNPIQAAIGVWLNAIQAAI 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.130    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,285,162
Number of Sequences: 59808
Number of extensions: 646730
Number of successful extensions: 1475
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1462
Number of HSP's gapped (non-prelim): 20
length of query: 478
length of database: 16,821,457
effective HSP length: 85
effective length of query: 393
effective length of database: 11,737,777
effective search space: 4612946361
effective search space used: 4612946361
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)