Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001809-TA|BGIBMGA001809-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (416 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   2.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   2.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   4.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   9.3  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 89  RKVSTPASSRHGLQNISSRSHLPSTPSLLGSVPEGKASRVNS 130
           ++  +P   +H L+N+   ++     ++LGS   GK + +N+
Sbjct: 82  KRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAGKTTLLNT 123


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 89  RKVSTPASSRHGLQNISSRSHLPSTPSLLGSVPEGKASRVNS 130
           ++  +P   +H L+N+   ++     ++LGS   GK + +N+
Sbjct: 82  KRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAGKTTLLNT 123


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 30  DERNPKVVFTPEETPSQMNGSPP 52
           DE  P+ V TPE  P+Q   S P
Sbjct: 389 DEIPPEPVPTPEPQPTQTTESEP 411


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 14/97 (14%)

Query: 30  DERNPKVVFTPEETPSQMNGSPPM----FKNKSNSNFEDATSPSKDFARSASAIQVAQNN 85
           D  +   V +P++  +  NG+PP         SNSN   ++  +   + S S       +
Sbjct: 103 DSTSSTGVASPQDLST--NGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATS 160

Query: 86  ERFRKVSTPASS--------RHGLQNISSRSHLPSTP 114
              + +S+PASS        + G  N +S+S   S P
Sbjct: 161 TTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNP 197


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,541
Number of Sequences: 317
Number of extensions: 2772
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 4
length of query: 416
length of database: 114,650
effective HSP length: 58
effective length of query: 358
effective length of database: 96,264
effective search space: 34462512
effective search space used: 34462512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)