Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001808-TA|BGIBMGA001808-PA|IPR011701|Major facilitator
superfamily MFS_1
         (679 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      29   0.10 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    27   0.32 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    26   0.74 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    26   0.74 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    26   0.74 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    26   0.74 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    26   0.74 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           26   0.74 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    26   0.74 
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    25   2.3  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    25   2.3  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    25   2.3  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    24   3.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   5.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   5.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   5.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 29.1 bits (62), Expect = 0.10
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 329 DKKGISENGRAEESGLVHQDSVPSIAPSQSNNQLKPNMSKRKLS--YSKTPKANPSTSSF 386
           D+K  SEN   E+S L+  D   S   S  +     N+S+   S  + K     P TSSF
Sbjct: 29  DEKRSSENLTEEKSSLI--DLTESEEKSGGSYSSNKNVSRADHSPVFGKVEPV-PHTSSF 85

Query: 387 SRHGSQETFSRRQSNAGPIRNYSTSSLAYISTPFHGSTLSAF 428
           +       +S     AGPI     S +    T   G+ L  F
Sbjct: 86  NMGYLVSPYSYANGAAGPIPVSMASKMGLAPTGHPGAALPFF 127


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 349 SVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSN----AGP 404
           S P ++   ++N  K +     LS S +P   P+TS+ S++ S    S   ++    AG 
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGT 184

Query: 405 IRNYSTSS 412
             N S SS
Sbjct: 185 NNNNSKSS 192


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 349 SVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSNA 402
           S P ++   ++N  K +     LS S +P   P+TS+ S++ S    S   +++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 349 SVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSNA 402
           S P ++   ++N  K +     LS S +P   P+TS+ S++ S    S   +++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 349 SVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSNA 402
           S P ++   ++N  K +     LS S +P   P+TS+ S++ S    S   +++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 349 SVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSNA 402
           S P ++   ++N  K +     LS S +P   P+TS+ S++ S    S   +++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 349 SVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSNA 402
           S P ++   ++N  K +     LS S +P   P+TS+ S++ S    S   +++
Sbjct: 81  STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 134


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 349 SVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSNA 402
           S P ++   ++N  K +     LS S +P   P+TS+ S++ S    S   +++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.74
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 349 SVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFSRHGSQETFSRRQSNA 402
           S P ++   ++N  K +     LS S +P   P+TS+ S++ S    S   +++
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 535 GSTLCDLNLIPKWCY-FVGGLIFAGISLIILPFMVSYTWISVVCAFYGLASGVNNSVTTL 593
           G  + + N +  +C     G ++  +++    FM  ++ + V+ A YG  +G+N  +  L
Sbjct: 97  GLNVIEANRLFFYCSGLASGYLYLKLAMKWPRFMKDWSCVEVMMASYGWPAGLNRRLNVL 156

Query: 594 V 594
           +
Sbjct: 157 L 157


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 535 GSTLCDLNLIPKWCY-FVGGLIFAGISLIILPFMVSYTWISVVCAFYGLASGVNNSVTTL 593
           G  + + N +  +C     G ++  +++    FM  ++ + V+ A YG  +G+N  +  L
Sbjct: 97  GLNVIEANRLFFYCSGLASGYLYLKLAMKWPRFMKDWSCVEVMMASYGWPAGLNRRLNVL 156

Query: 594 V 594
           +
Sbjct: 157 L 157


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 535 GSTLCDLNLIPKWCY-FVGGLIFAGISLIILPFMVSYTWISVVCAFYGLASGVNNSVTTL 593
           G  + + N +  +C     G ++  +++    FM  ++ + V+ A YG  +G+N  +  L
Sbjct: 97  GLNVIEANRLFFYCSGLASGYLYLKLAMKWPRFMKDWSCVEVMMASYGWPAGLNRRLNVL 156

Query: 594 V 594
           +
Sbjct: 157 L 157


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 2/19 (10%)

Query: 95  VSFVRLAYWLFSLYYLLIC 113
           +S V+L  W+F LY L++C
Sbjct: 200 ISLVQL--WIFQLYLLILC 216


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 348 DSVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFS 387
           D +P I+ ++ NN   P+ +    +++       S  S S
Sbjct: 116 DEIPDISSTRGNNNNTPSATNNNTNFNNNSNGASSVGSSS 155


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 348 DSVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFS 387
           D +P I+ ++ NN   P+ +    +++       S  S S
Sbjct: 64  DEIPDISSTRGNNNNTPSATNNNTNFNNNSNGASSVGSSS 103


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 348 DSVPSIAPSQSNNQLKPNMSKRKLSYSKTPKANPSTSSFS 387
           D +P I+ ++ NN   P+ +    +++       S  S S
Sbjct: 247 DEIPDISSTRGNNNNTPSATNNNTNFNNNSNGASSVGSSS 286


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,867
Number of Sequences: 317
Number of extensions: 6130
Number of successful extensions: 31
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 16
length of query: 679
length of database: 114,650
effective HSP length: 61
effective length of query: 618
effective length of database: 95,313
effective search space: 58903434
effective search space used: 58903434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)