GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001807-TA|BGIBMGA001807-PA|IPR001506|Peptidase M12A,
astacin
         (413 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g...    31   1.4  
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ...    31   1.9  
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ...    30   3.3  
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ...    29   4.3  
At3g04820.1 68416.m00522 expressed protein contains PFam profile...    29   4.3  
At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR...    29   7.5  
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    29   7.5  
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila...    28   9.9  
At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCH...    28   9.9  

>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) /
           1,3-beta-glucan synthase 1 nearly identical to callose
           synthase 1 catalytic subunit [Arabidopsis thaliana]
           GI:13649388
          Length = 1922

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 300 MMSNRH-DRDNFVTVLWNHIQKGKEHYFEKSPPSATLTDQDGVYTAYSFDSATHAPANFM 358
           ++ NR  D+D  V VL N ++       E+  PS   T  +G Y  Y   +  H    + 
Sbjct: 927 LLENREEDKDQIVIVLLNMLELVTRDIMEEEVPSLLETAHNGSYVKYDVMTPLHQQRKYF 986

Query: 359 SE 360
           S+
Sbjct: 987 SQ 988


>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase;
            contains non-consensus splice aite AC at exon 33
          Length = 1959

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 300  MMSNRH-DRDNFVTVLWNHIQKGKEHYFEKSPPSATLTDQDGVYTAYSFDSATHAPANFM 358
            +M NR  D+D  V VL N ++       ++  PS   +  +G Y  Y   +  H    + 
Sbjct: 964  LMENREEDKDQIVIVLLNMLEVVTRDIMDEEVPSMLESTHNGTYVKYDVMTPLHQQRKYF 1023

Query: 359  SE 360
            S+
Sbjct: 1024 SQ 1025


>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
           protein low similarity to transcriptional repressor
           Not4-Np [Homo sapiens] GI:6856207; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif)
          Length = 944

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 105 NRREISRIVIDMLKASIEGTMLPINSFDLMKRFQEKDTNPTSTKLLSSKDRNY 157
           +R+E S+IV+D +K S+   +         +R    D +PTS +L SS D  Y
Sbjct: 319 SRKEESQIVMDKVKPSVLKPLQHNVVVSGSERITAPDRDPTSNRLSSSVDSAY 371


>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 674

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 306 DRDNFVTVLWNHIQKGKEHYFEKSPPSATL 335
           D D+FV  LW+H+ +  + YF  +    T+
Sbjct: 72  DSDSFVAWLWDHLAESVDEYFSSNVEGTTI 101


>At3g04820.1 68416.m00522 expressed protein contains PFam profile
           PF01142: Uncharacterized protein family UPF0024;
           expression supported by MPSS
          Length = 747

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 74  INNQDRRKTCQNERYDYTKSVVNMQIGYKCLNRREISRIVIDMLKASIEGTMLPI 128
           +  +D+ K+C N   +YT +V + +     +   E   I+I+ + +  +G +LP+
Sbjct: 93  VKEEDKAKSCDNVPQNYTSAVESFK-SISSVTDAERLEILINQVTSGTDGEVLPV 146


>At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 812

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 129 NSFDLMKRFQEKDT-NPTSTKLLSSKDRNYINAHYHHECSALTQLPAVETRRFFTNIVMN 187
           N  D M    E D   P S  +++S+DR  +   + +E   L  L   + R+ FT     
Sbjct: 263 NEQDAMSFLGEIDQFGPGSLIIITSRDRQVLEKCHLNEIYELNGLNGEDARKLFTRCAFG 322

Query: 188 KD 189
           KD
Sbjct: 323 KD 324


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 22  NGVVHYAINN----KDYDLHSQDIIISTLTDIQKEICVKFFNTPSNYNISDGKILYINNQ 77
           N ++H A  N    KD+ LHS  + +  ++DIQ E    +F   +    S G  +Y  +Q
Sbjct: 413 NFILHEACANASRKKDHALHSHPLTLKVVSDIQNEYFKGYFRCSACDRESCG-FIYEEDQ 471

Query: 78  ---DRRKTCQNERYDY 90
              D R    +E +DY
Sbjct: 472 YSIDIRCASVSEPFDY 487


>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
           to SP|P36175 O-sialoglycoprotein endopeptidase (EC
           3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
           contains Pfam profile PF00814: Glycoprotease family
          Length = 480

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 129 NSFDLMKRFQEKDTNPTSTKLLSSKDRNYINAHYHHECSALTQLPAVETRRFFTNIVM 186
           NS  L K  + K   PT + +  S   N+    ++   + ++ LP  E   F  N+V+
Sbjct: 29  NSLRLQKHHKLKTKTPTFSLISPSSSPNFQRTRFYSTETRISSLPYSENPNFDDNLVV 86


>At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCHEL)
           99.4% identical to WUSCHELL (GI:4090200) [Arabidopsis
           thaliana]
          Length = 292

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 11/70 (15%)

Query: 135 KRFQEKD-TNPTSTK---LLSSKDRNYINAHYHHECSALTQLPAVETRRFFTNIVMNKDS 190
           KRF   + T P+S+    ++++ D  +   H+HH      Q PA        N+ +N+D 
Sbjct: 99  KRFNGTNMTTPSSSPNSVMMAANDHYHPLLHHHH--GVPMQRPANSV-----NVKLNQDH 151

Query: 191 EMYYSNKVWP 200
            +Y+ NK +P
Sbjct: 152 HLYHHNKPYP 161


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,872,411
Number of Sequences: 28952
Number of extensions: 409482
Number of successful extensions: 813
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 9
length of query: 413
length of database: 12,070,560
effective HSP length: 83
effective length of query: 330
effective length of database: 9,667,544
effective search space: 3190289520
effective search space used: 3190289520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)