Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001806-TA|BGIBMGA001806-PA|IPR000086|NUDIX hydrolase
         (227 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43830| Best HMM Match : NUDIX (HMM E-Value=2.8e-09)                 31   1.0  
SB_27016| Best HMM Match : NUDIX (HMM E-Value=1.4e-16)                 31   1.0  
SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.8  
SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_41765| Best HMM Match : Transgly_assoc (HMM E-Value=0.49)           28   7.3  
SB_11303| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_43830| Best HMM Match : NUDIX (HMM E-Value=2.8e-09)
          Length = 416

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/48 (33%), Positives = 20/48 (41%)

Query: 106 LPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNF 153
           LP G L   E  + G KR + E  G +        I+   GNW R  F
Sbjct: 338 LPAGRLEKNESLVQGAKREVIEETGLEFEPSTMICIDTVFGNWIRVTF 385


>SB_27016| Best HMM Match : NUDIX (HMM E-Value=1.4e-16)
          Length = 454

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/48 (33%), Positives = 20/48 (41%)

Query: 106 LPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNF 153
           LP G L   E  + G KR + E  G +        I+   GNW R  F
Sbjct: 212 LPAGRLEKNESLVQGAKREVIEETGLEFEPSTMICIDTVFGNWIRVTF 259


>SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1091

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 43  TNYTFGTKE--PLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQLG 100
           T++  G  E  PL  K+  +   + R+RE+F K+   +S     L  E+G   + L ++G
Sbjct: 47  TSFMHGVDEHTPLIRKEERMENAWDRIREKFPKMNPAKSPFTATL-DEYGRVVIKLKRMG 105

Query: 101 TAFFKL--PGGELN 112
              ++L   GGELN
Sbjct: 106 GKSYRLFDAGGELN 119


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 152 NFEPPQYPYIPPHITKPKEHKRLFLVQLQ 180
           NF PPQ  YIPP    PK  + LF+  L+
Sbjct: 218 NFTPPQQEYIPPE-EDPKATRTLFVGNLE 245


>SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 7   PPGNKQWPARPGLQHQISQNPSMNLTLNRSIN-LYPLTN 44
           PPG    PAR  L+H  ++N  + L  NR    L P  N
Sbjct: 327 PPGMTPRPARSNLEHDYNKNTDLLLQANRGCEFLAPCEN 365


>SB_41765| Best HMM Match : Transgly_assoc (HMM E-Value=0.49)
          Length = 303

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 43  TNYTFGTKE--PLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQLG 100
           T++  G  E  PL  K+  +   + R+RE+F K+   +S     L  E+    V L ++G
Sbjct: 47  TSFIHGVDEHTPLIRKEERMENAWDRIREKFPKMNPAKSPFTATL-DEYERVVVKLKRMG 105

Query: 101 TAFFKL--PGGELN 112
              ++L   GGELN
Sbjct: 106 GKSYRLFDAGGELN 119


>SB_11303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 20  QHQISQNPSMNLTLNRSINLY-----PLTNYTF-GTKEPLFEKDASVPARFQRMREEFCK 73
           ++ + +NP M+L+   +  +      PL   TF GT + L      + A F  +R+E   
Sbjct: 860 KNDVIKNPEMDLSEAAAAAIIDPVASPLLAKTFRGTPQTLL-----ITAEFDPLRDEGFL 914

Query: 74  IGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGE---LNPGEDEIDGLKRLLT 126
              R  + GV LVH+H       L L +  F  P       N   D ID L+RL T
Sbjct: 915 YAERIKLAGVELVHKHYFSFHGFLTLTSEPFPHPFSTEEGRNGTRDVIDFLQRLKT 970


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.140    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,319,595
Number of Sequences: 59808
Number of extensions: 331873
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 7
length of query: 227
length of database: 16,821,457
effective HSP length: 80
effective length of query: 147
effective length of database: 12,036,817
effective search space: 1769412099
effective search space used: 1769412099
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)