Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001802-TA|BGIBMGA001802-PA|undefined
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289... 33 1.0
04_04_0388 + 24873624-24873806,24873908-24873979,24874088-248741... 32 1.8
07_03_0145 - 14376610-14377992 31 4.2
10_08_0640 + 19512591-19512856,19513428-19513550,19513660-195137... 30 7.3
08_02_0917 - 22609543-22609852,22609925-22610266,22610596-226108... 30 7.3
07_03_0252 - 15846143-15848473 30 7.3
12_01_0736 + 6582371-6585370 29 9.6
10_08_0019 - 14167952-14171059 29 9.6
06_03_1248 + 28685911-28687719 29 9.6
>07_03_1268 +
25328448-25328506,25328589-25328768,25328872-25328974,
25329095-25329119,25329587-25329614,25330603-25330755,
25331339-25333421,25333666-25334983,25335256-25335339,
25335756-25335769
Length = 1348
Score = 32.7 bits (71), Expect = 1.0
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 476 AHIVRSHSQNAYENSPRRVVVRRVQATSPKRDAQTDKSDQIQPKPI-WKRGLTEFSLLTR 534
+HI RS+SQN+ + P V+ + T + + +K P P G S+ R
Sbjct: 251 SHIHRSNSQNSVDVPPEPSAVQHPKPTIQQSVEKQEKETDALPAPAPAGGGSRRLSVQDR 310
Query: 535 LRAFGQSRRQESPTRNENGNDRNPLTSPVKVVRRSRPEAR---EGVRRRSN------SLS 585
+ F +S+++E + + N P K R P + VRR SN LS
Sbjct: 311 INMF-ESKQKEQTSSSGNSAACTSKVVPTKGEHRRVPSGASMDKLVRRWSNVSDMSIDLS 369
Query: 586 NETVNSAEPRP--GTLIGAPLS 605
N +S + GT +G P S
Sbjct: 370 NNDSSSLNEKREIGTPVGTPTS 391
>04_04_0388 +
24873624-24873806,24873908-24873979,24874088-24874150,
24874413-24874764,24874869-24875060,24875356-24875774
Length = 426
Score = 31.9 bits (69), Expect = 1.8
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 27 LTHRPTWRASLLTARHVTGSVRPRQGNE--YDFLVDTEKGPVRMLAPDWETMQDWVTTLR 84
LT R RA ++ +P + + Y V T KG V + A D+ + WVT L
Sbjct: 342 LTLRENDRAGVIHDVQPCAPEKPSRDEDATYPIEVTTSKGKVELRADDYGVYKRWVTALT 401
Query: 85 NKLSELKIMSKGENVYCAPP 104
+ L+ + K + PP
Sbjct: 402 HMLAAPTAICKAHELPPPPP 421
>07_03_0145 - 14376610-14377992
Length = 460
Score = 30.7 bits (66), Expect = 4.2
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 532 LTRLRAFGQSRRQESPTRNENGNDRNPLTSPVKVVRRSRPEAREGVRRRSNSLSN 586
L RLRA GQ ++ N+ N+ P +P +V R + + V +++ SN
Sbjct: 358 LQRLRAIGQKEKEAEYMENKTCNNLEPRMTPKRVWRPIEVKGKRSVISQTSDKSN 412
>10_08_0640 +
19512591-19512856,19513428-19513550,19513660-19513729,
19513846-19513956,19514224-19514307,19515205-19515255,
19515844-19515873,19516002-19516064,19516164-19516229,
19516369-19516485,19516579-19516614,19516938-19517057,
19517188-19517358,19517578-19517688
Length = 472
Score = 29.9 bits (64), Expect = 7.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 59 VDTEKGPVRMLAPDWETMQDWVTTLR 84
+DT GP ++A +WET+ W+ +R
Sbjct: 427 IDTIHGPRFLVADNWETIDSWLDAIR 452
>08_02_0917 -
22609543-22609852,22609925-22610266,22610596-22610858,
22611318-22612349
Length = 648
Score = 29.9 bits (64), Expect = 7.3
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 194 CLDGSLLERIGSGSGG--DFDEELGETEEYRQTVLVPEDSADVDQPRIDCPSNITVIQVS 251
CL+ +L +R G G GG D D+ +GE + V E +A V +D S + ++
Sbjct: 323 CLEVALYQRGGGGDGGGDDMDKRVGEMMRQLKYVRGLEFAAGVGY--VDFLSRVNRVEDE 380
Query: 252 NRE-----APHTAIPI-VSTEDVFDFD 272
R APH + + +S+ D+ FD
Sbjct: 381 ARRNGSWAAPHPWLNLFISSRDIAAFD 407
>07_03_0252 - 15846143-15848473
Length = 776
Score = 29.9 bits (64), Expect = 7.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 190 GQNICLDGSLLERIGSGSGGDFDEEL 215
GQ +C+DG L G G GG+ EL
Sbjct: 93 GQRVCIDGERLRVPGDGGGGEVGGEL 118
>12_01_0736 + 6582371-6585370
Length = 999
Score = 29.5 bits (63), Expect = 9.6
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 243 SNITVIQVSNREAPHTAIPIVSTEDVF-------DFDVNRKTPNFVNIVNTE-VNVQNTN 294
SN++V+Q+SN PI+ +F ++ PNF N + ++V NTN
Sbjct: 275 SNLSVLQLSNNNFEGWFPPIIFQHKKLRGIDLSKNFGISGNLPNFSADSNIQSISVSNTN 334
Query: 295 DYGTVFNDYGHVSTMTSVSLTA 316
GT+ + ++ ++ ++L A
Sbjct: 335 FSGTIPSSISNLKSLKELALGA 356
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 29.5 bits (63), Expect = 9.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 36 SLLTARHVTGSVRPRQGN 53
++LTARH TGS R QGN
Sbjct: 367 AVLTARHFTGSTRDEQGN 384
>06_03_1248 + 28685911-28687719
Length = 602
Score = 29.5 bits (63), Expect = 9.6
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 475 DAHIVRSHSQNAYENSPRRVVVRRVQATSPKRDAQTDKSDQIQ-PKPIWKRGLTEFSLLT 533
DA + + ++A +N P V+ + + + +TD+S Q + PKP + +E S+++
Sbjct: 364 DAIVEEAAIESATQNEPDEPESTTVEEMAVEEEIKTDESQQEETPKPEERMENSETSVIS 423
Query: 534 ----RLRAFGQSRRQESPTRNENGNDRNPLTSPVKVVRRSRPEAREGVRRRSNSLSNETV 589
+ A + ++ E P E + + + S A + + E
Sbjct: 424 EDPKEMDAISEDQKVEEPVVAEEQEELSEVVKMAVEPSISSEPATPLEEEDRDDVETEQA 483
Query: 590 NSAEP 594
NS+EP
Sbjct: 484 NSSEP 488
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.129 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,419,918
Number of Sequences: 37544
Number of extensions: 755767
Number of successful extensions: 1434
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1428
Number of HSP's gapped (non-prelim): 9
length of query: 706
length of database: 14,793,348
effective HSP length: 87
effective length of query: 619
effective length of database: 11,527,020
effective search space: 7135225380
effective search space used: 7135225380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
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