Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001802-TA|BGIBMGA001802-PA|undefined
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18570.1 68417.m02749 proline-rich family protein common fami... 32 1.5
At1g67040.1 68414.m07624 expressed protein ; expression supporte... 32 1.5
At5g41950.1 68418.m05108 expressed protein 31 3.5
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 31 3.5
At3g05380.1 68416.m00588 myb family transcription factor contain... 30 4.6
At5g44150.1 68418.m05403 expressed protein 30 6.1
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 30 6.1
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 30 6.1
At1g09720.1 68414.m01091 kinase interacting family protein simil... 30 6.1
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 29 8.0
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 31.9 bits (69), Expect = 1.5
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 518 PKPIWKRGLTEFSLLTRLRAFGQSRRQ---ESPTRNENGNDRNPLTSPVKVVRRSRPEAR 574
P+PI + T S+ + A G R+ ES +R+ N + +S + VR P
Sbjct: 225 PEPITNQENTNKSISSSGDADGDIYRKDEIESYSRSSNSEELTE-SSSLSTVRSRVPRVP 283
Query: 575 EGVRRRSNSLSNETVNSAEPRPGTLIGAP 603
+ +RS SL + T N A+P P I P
Sbjct: 284 KPPPKRSISLGDSTENRADPPPQKSIPPP 312
>At1g67040.1 68414.m07624 expressed protein ; expression supported
by MPSS
Length = 826
Score = 31.9 bits (69), Expect = 1.5
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 53 NEYDFLVDTEKGPVRMLAPDWETMQDWVTTLRNKLSE 89
N +D + + P+ + PDW+ ++D+ T+ +N S+
Sbjct: 621 NSFDNISGQMRLPLEPIEPDWDILEDYATSFKNSTSD 657
>At5g41950.1 68418.m05108 expressed protein
Length = 565
Score = 30.7 bits (66), Expect = 3.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 59 VDTEKGPVRMLAPDWETMQDWVTTLR 84
+DT GPV ++A WE++ W+ +R
Sbjct: 520 IDTIHGPVFLVADSWESLDGWLDAIR 545
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 30.7 bits (66), Expect = 3.5
Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 13/169 (7%)
Query: 436 STPSVSHAQVNRTVNNISAAHVSPEPISLTSSEVNRNVLDAHIVRSHSQNAYENSPRRVV 495
ST Q NR +N+ + P P S+T++E + + ++ +P R
Sbjct: 297 STQQQQAVQTNRHMNSTAP----PRP-SVTAAEPMNSAAPPRPSVTAAEPMNSTAPPRPS 351
Query: 496 VRRVQATSPKRDAQTDKSDQIQPKPIWKRGLTEFSLLTRLRAFGQS--RRQESPTRNENG 553
V +AT P A + QP PI ++ E + + A + + P +
Sbjct: 352 VTAAEATPPNLSAPLPHCNTPQPSPISQQAAVESNTQMQSTALPRPSVTAEARPLHQPHS 411
Query: 554 NDRNPLTSPVKVVRRSRPE------AREGVRRRSNSLSNETVNSAEPRP 596
N P P + + +S R + + L N+ +PRP
Sbjct: 412 NTSQPRPIPQQALAQSNTNITSTALPRPSITAEARLLHQPHSNTPQPRP 460
>At3g05380.1 68416.m00588 myb family transcription factor contains
Pfam profile:PF00249 Myb-like DNA-binding domain
Length = 1055
Score = 30.3 bits (65), Expect = 4.6
Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 15/170 (8%)
Query: 447 RTVNNISAAHVSPEPISLTSSEVNRNVLDAHIVRSHSQNAYENSPRRVVVRRVQATSPKR 506
RT ++ +PE S +S NV + H+ ++ EN+ +R + P R
Sbjct: 411 RTEYDMDEKSSTPEATSTSSHGEKANV-EPDDSLLHAISSVENANKR-------KSKPSR 462
Query: 507 DAQTDKSD----QIQPKPIWKRGLTEFSLLTRLRAFGQSRRQESPTRNENGNDRNPLTSP 562
TD D ++QP+ + +L A + + +S + E D N + S
Sbjct: 463 LVSTDCDDVPTGKLQPQTSGSLRKRKPKVLGD-EAPAEFSQNKSINKKELPQDENNMKSL 521
Query: 563 VKVVRRSRPEAREGVRRRSNSLSNETVNSAEPRPG-TLIGAPLSVRD-GP 610
VK R + A+ + +L + S + RPG ++ +P V D GP
Sbjct: 522 VKTKRAGQVPAQSKQMKTVKALEESAITSDKKRPGMDIVASPKQVSDSGP 571
>At5g44150.1 68418.m05403 expressed protein
Length = 355
Score = 29.9 bits (64), Expect = 6.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 439 SVSHAQVNRTVNNISAAHVSPEPISLTS--SEVNRNVLDAHIVRSHSQNAYENSPRRVVV 496
S A ++ +N+ S AH P P++ S S LD+ +++SHS N P
Sbjct: 252 SAIEADLDLLLNSFSEAHTQPNPVASASGKSSAFETELDS-LLKSHSSTEQFNKPGNPSD 310
Query: 497 RRVQAT 502
+++ T
Sbjct: 311 QKIHMT 316
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 29.9 bits (64), Expect = 6.1
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 318 NQNDAYERLCNASTSKVEVLKSLDKNRKSSLPNLVKES 355
+QND+ +R+ E +K ++ N+KS+ P++ K+S
Sbjct: 738 SQNDSKDRMKENDLKSAEKVKGVESNKKSTDPHVKKDS 775
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 29.9 bits (64), Expect = 6.1
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 318 NQNDAYERLCNASTSKVEVLKSLDKNRKSSLPNLVKES 355
+QND+ +R+ E +K ++ N+KS+ P++ K+S
Sbjct: 708 SQNDSKDRMKENDLKSAEKVKGVESNKKSTDPHVKKDS 745
>At1g09720.1 68414.m01091 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 928
Score = 29.9 bits (64), Expect = 6.1
Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 257 HTAIPIVSTEDVFDFDVNRKTPNFVNIVNTEVNVQNTNDYGTVFNDYGHVSTMTSVSLTA 316
H P+V +D D D +K P ++++ + N+ + + ++
Sbjct: 104 HVPFPLVDDDDDDDDDNPKKPPKHLHLIPSGTNIPQVPEVPKKEFKSQSLMVLSRKEPGV 163
Query: 317 VNQNDAYERLCNASTSKVEVLKSLDKNRKSSLPNLVKESDYEFL 360
+ ++ L ++ S+ E L+ +DK K LV +++ EF+
Sbjct: 164 LQSSETSSALVSSGLSREEALEEIDKIHKGI---LVLQTEKEFV 204
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 29.5 bits (63), Expect = 8.0
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 179 SQRSEGIAKICGQNICLDGSLLERIGSGSGGDF---DEELGETEEYRQTVLVPEDSADVD 235
S+R EG+ I GS+ R+ S SG DEE G E+R +PE +A +
Sbjct: 916 SERHEGVVSSPSSTILEGGSVSNRMSSTSGNQIVGVDEEEGGNFEFR----LPE-TALTE 970
Query: 236 QPRIDCPSNITVIQVSNREAPHTAIPIVSTEDVFDFDVNRKTP 278
P + PS + +E+ +++ S++ F R+ P
Sbjct: 971 VP-MKLPSRNLIRSPPIKESSESSLTEASSDQNFTVGEGRRYP 1012
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.129 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,188
Number of Sequences: 28952
Number of extensions: 587249
Number of successful extensions: 1185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1175
Number of HSP's gapped (non-prelim): 16
length of query: 706
length of database: 12,070,560
effective HSP length: 86
effective length of query: 620
effective length of database: 9,580,688
effective search space: 5940026560
effective search space used: 5940026560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
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