Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001798-TA|BGIBMGA001798-PA|undefined
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    32   0.41 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    31   0.72 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    30   1.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    30   1.3  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    30   1.7  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   2.2  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   2.9  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    28   6.7  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   8.8  

>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 18/94 (19%), Positives = 41/94 (43%)

Query: 552  VDEYGTELANLPFSYQPMVGDEPVDQRDLSTELMADVIMPSIKGNKNYVKIIGRDVGGEP 611
            ++EY  +LAN   +    +  +  D+ ++   L+ D++     GN    +I G +  GE 
Sbjct: 1053 IEEYIQKLANTKLALDMSLSSDGKDREEIGERLVQDMLDEENNGNNTKPEITGNESDGEF 1112

Query: 612  FVRLAGPLRRPEARTGRSAAVVFPDAVNDLERVE 645
             V  +   ++ +A    +   +     N +E+ +
Sbjct: 1113 KVSSSNNSKQTDAEETNTGVPLEGSQPNSVEKTD 1146


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 231  SWRSRHNLHSSASTKDREVSEALSKLMLKYQGVHTDTASDGTM--RALASA 279
            SW S+H LHS    + R++ + L ++M K Q +  ++ SD  +  R L SA
Sbjct: 986  SWCSKHFLHSKTLKRARDIRQQLVEIMSK-QKISLESVSDWDIVRRVLCSA 1035


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 3/156 (1%)

Query: 20  RSENDTRKDDVSDGIEQKANDQSYDDDFLDSPXXXXXXXXXLTDSINYRNDTANYEDPVE 79
           +S +D++K        +KA+  S +     S           ++S +  ND+++     E
Sbjct: 78  KSNDDSQKISKKGAPPEKAHSSS-EASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSE 136

Query: 80  TSTAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTRAMEDYDYVSSKAP-ESDGDQ 138
           + ++ +     S     ++E  +S  +D    ++S  +  + ED D  SS +  ES+   
Sbjct: 137 SESSSEDSDSSSSSSDSESES-SSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSS 195

Query: 139 EVDGQGNPKTDGSEQTLAEGRQFNGPTQPVHKNKSS 174
           E     +  +D   ++ +EG   +  +       SS
Sbjct: 196 EDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSS 231



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 22  ENDTRKDDVSDGIEQKANDQSYDDDFLDSPXXXXXXXXXLTDSINYRNDTANYEDPVETS 81
           +ND+         E  + D        DS           + S +     ++ ED   +S
Sbjct: 179 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSS 238

Query: 82  TAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTRAMEDYDYVS-SKAPESDGDQEV 140
           ++ D    ES+   ED++  +S+ +D + E++S  +  +    D    S +  SD + E 
Sbjct: 239 SSSD---SESESSSEDSDSSSSS-SDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESES 294

Query: 141 DGQGNPKTDGSEQT 154
             + +  T  S  +
Sbjct: 295 SSEDSDSTSSSSDS 308


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 437 PPNDAPQIDLYDTDSVSSFSAESRTESLSPRDV 469
           P  D+P  D +DTD   S  AES T ++ P D+
Sbjct: 810 PVVDSPLFDAFDTDLGMSSVAESHTMNMDPSDL 842


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 348 DVLPYSTQVMDLDGAENLATEDDSPSWNRAIFNQGRQGRLISELEKYRYDTLL 400
           +++PY T ++  DG +   T  D+P +  AI N+     ++  +E  +YD +L
Sbjct: 96  EIVPYQTDIILEDGTKINLTVLDTPHFGEAIDNENNFDIILQYIES-QYDNVL 147


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/159 (15%), Positives = 67/159 (42%), Gaps = 4/159 (2%)

Query: 21  SENDTRKDDVSDGIEQKANDQSYDDDFLDSPXXXXXXXXXLTDSINYRNDTANYEDP--- 77
           S+   +K   S   E+ +++   +    +S           ++S +  +++++ E     
Sbjct: 67  SKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEV 126

Query: 78  -VETSTAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTRAMEDYDYVSSKAPESDG 136
            V+T    +  ++ S     + E       +EK E++S +++ +        S + ES+ 
Sbjct: 127 IVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEE 186

Query: 137 DQEVDGQGNPKTDGSEQTLAEGRQFNGPTQPVHKNKSST 175
           ++EV  +   K +GS ++ ++    +  +     + SS+
Sbjct: 187 EEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSS 225


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 350 LPYSTQVMDLDGAENLATEDDSPSWNRAIFNQGRQGRLISELEKYRYDTL 399
           L  S +   LDG   +A  D    W R IFN  +Q     E+ KY +DT+
Sbjct: 54  LKSSLENATLDGPSQVACLDTISVWLRRIFNACKQD---PEISKYVWDTM 100


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 545 SVRESLIVDEYGTELANLPFSYQPMVGDEPVDQRDLSTELMADVIMP 591
           S  +SL + +   EL    FSY P+V  EP+ ++D  T+++++ I P
Sbjct: 248 STLQSLTMKQMDLELPR--FSYYPVVKPEPLSKQD--TDILSNYINP 290


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 107 DEKMETTSLATTRAMEDYDYVSSKAPESDGDQEVDGQGNPKTDG---SEQTLAEGRQFNG 163
           D+  E     T   +E ++Y+ S   + DGD E++   NP+ D    SE        FNG
Sbjct: 91  DDTSEVAGEETFGQIERFEYLLSSDGDGDGDVEIE---NPEVDDYQVSEHDFGLEDDFNG 147


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,929,991
Number of Sequences: 5004
Number of extensions: 165664
Number of successful extensions: 371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 14
length of query: 905
length of database: 2,362,478
effective HSP length: 79
effective length of query: 826
effective length of database: 1,967,162
effective search space: 1624875812
effective search space used: 1624875812
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)