GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001798-TA|BGIBMGA001798-PA|undefined
         (905 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    36   0.16 
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    33   1.1  
At2g22795.1 68415.m02704 expressed protein                             32   1.5  
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa...    32   2.0  
At5g40160.1 68418.m04874 ankyrin repeat family protein (EMB506) ...    31   2.6  
At2g42530.1 68415.m05263 cold-responsive protein / cold-regulate...    31   3.4  
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    31   4.5  
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    30   6.0  
At1g55880.2 68414.m06409 pyridoxal-5'-phosphate-dependent enzyme...    30   7.9  
At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme...    30   7.9  

>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 35.5 bits (78), Expect = 0.16
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 12/172 (6%)

Query: 218 SDIVIVGYDSNGISWRSRHNLHSSASTKDREVSEALSKLMLKYQGVHTDTASDGTMRALA 277
           +D++I G D   ++    H +H    +  RE+   LS   + Y   +     D   RAL 
Sbjct: 21  ADLLIDGTDVLKLNPAGLHYVHLRLESL-RELELMLSGAPVDYLRAYVSDIGD--FRALE 77

Query: 278 SAAKLVPYDSALFVITDKGAGDPQRLPLALRTLVDKRLKVYTIWTNPDIPTADEANELQE 337
              +++    +L V++   +  P R P  L  L   +LKV  +    D+ T+  A  L E
Sbjct: 78  QLRRILRLLPSLKVVSSLPS--PARDPTPLSLLPFSKLKVLEL-RGCDLSTSS-AKGLLE 133

Query: 338 LRNISQHT-EGDVLPYSTQVMDLDGAENLATEDDSPSWNRAIFNQGRQGRLI 388
           LR    HT E  +   ST  +    A  +A   DSP WN+  F      RL+
Sbjct: 134 LR----HTLEKLICHNSTDALRHVFASRIAEIKDSPQWNKLAFISCACNRLV 181


>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 25  TRKDDVSDGIEQKAN-DQSYDDDFLDSPXXXXXXXXXLTDSINYRNDTANYEDPVETSTA 83
           + K   SD + +  + +  +     D P         L DS   R +  +YEDP ET+  
Sbjct: 182 SEKSHSSDSLAKNTSANVDFSSQKTDDPVTDVRSDLSLRDSS--RCEENSYEDPFETNYE 239

Query: 84  PDYVTQESDVIYEDTEVFNSTYA--DEKMETTSLATTRAMED 123
              +  + DV+ E+ E  +S     + ++E   +A  R ++D
Sbjct: 240 TVELQNQHDVLLEELESGSSQLCSLESELELLQMAAERLLDD 281


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 69  NDTANYEDPVETSTAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTRAMEDYDYVS 128
           ++ AN E+  E +   D  +  S+V++E  E  + +   EK+E  S   T  +ED   + 
Sbjct: 289 DEKANIEEARENNYKGDDAS--SEVVHESEEKTSESENSEKVEDKSGIKTEEVED-SVIK 345

Query: 129 SKAPES--DGDQEVDGQGNPKTDGSEQTLAEGRQFNGPTQPVHKNK 172
           S  P +  +G+   D +    + G E    EG +  G  + + KN+
Sbjct: 346 SVLPNTTDNGESSSDEKSTGSSSGHESDSLEGIKSEG--ESMEKNE 389


>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 576

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 95  YEDTEVFNSTYADEKMETTSLATTRAMEDYDYVSSKAPESDGDQEVDG-QGNPKTDGSE 152
           Y++ ++ +   A E  ET +   T A ED D VS    ESD D + D    N + D S+
Sbjct: 515 YDEKDLKDDKKAKESTETDAENGTDAEEDEDAVSEDGVESDSDADEDAVSENDEEDESD 573


>At5g40160.1 68418.m04874 ankyrin repeat family protein (EMB506)
           identical to ankyrin repeat protein EMB506 [Arabidopsis
           thaliana] GI:5911312; contains ankyrin repeats,
           Pfam:PF00023
          Length = 315

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 133 ESDGDQEVDGQGNPKTDGSEQTLA-EGRQFNGPTQPV--HKNKSSTLRSWLEDSWLRQPA 189
           ESD + +   Q    TD  E+ LA E  Q   P + V   +N+   L+     SW     
Sbjct: 99  ESDWEDDSRVQKLTTTDNYEEELAKEVEQLLEPEERVILQQNEKPNLKMISTKSWK---- 154

Query: 190 AVLVPLRPMALSRALAVWNDLIAEGLNVSDI 220
               PL+ +ALS  + + ++LI  GL++ D+
Sbjct: 155 ----PLQTLALSMQIQLMDNLIENGLDIDDV 181


>At2g42530.1 68415.m05263 cold-responsive protein / cold-regulated
           protein (cor15b) nearly identical to cold-regulated gene
           cor15b [Arabidopsis thaliana] GI:456016; contains Pfam
           profile PF02987: Late embryogenesis abundant protein
          Length = 141

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 80  TSTAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTRAMEDYDYVSSKAPES 134
           T  A D+VT ++     D E       ++ +E    AT  A +  DYV+ K  E+
Sbjct: 66  TKKASDFVTDKTKEALADGEKTKDYIVEKTIEANETATEEAKKALDYVTEKGKEA 120


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 79  ETSTAPDYVTQESDVIYEDTEVFNSTYADEKMETTSLATTRAMEDYDYVSSKAPESDGDQ 138
           +TS + D V +ESD    + E  +++ ++E M+  S A  +  E      S   ES+ + 
Sbjct: 187 DTSNSED-VQKESDTSNSEDE--SASESEESMQADSAAREKYQEKKATKRSVFLESENEA 243

Query: 139 EVDGQGNPKTDGSEQT 154
           EVD       DG++ T
Sbjct: 244 EVDRTETESEDGTDST 259


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 509 DTCDYRLCVMARAQIHLDVGTDGADMLKLRVTGPVASVRES 549
           D C  ++    R  + L  G DGA  L+  +TG + ++RE+
Sbjct: 699 DQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREA 739


>At1g55880.2 68414.m06409 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 348

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 238 LHSSASTKDRE----VSEALSKLMLKYQGVHTDTASDGTMRALASAAKLVPYDSALFVIT 293
           L+   S KDR     + EAL    L   G+ T+ ++  T  +LA+ A        + VI 
Sbjct: 74  LNPGGSVKDRVAVKIIQEALESGKLFPGGIVTEGSAGSTAISLATVAPAYGCKCHV-VIP 132

Query: 294 DKGAGDPQRLPLALRTLVDKRLKVYTI-----WTNPDIPTADEANELQELRNISQHTEG 347
           D  A +  ++  AL   V+ R++  +I     + N     ADEANEL   R +   T G
Sbjct: 133 DDAAIEKSQIIEALGASVE-RVRPVSITHKDHYVNIARRRADEANELASKRRLGSETNG 190


>At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 421

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 238 LHSSASTKDRE----VSEALSKLMLKYQGVHTDTASDGTMRALASAAKLVPYDSALFVIT 293
           L+   S KDR     + EAL    L   G+ T+ ++  T  +LA+ A        + VI 
Sbjct: 74  LNPGGSVKDRVAVKIIQEALESGKLFPGGIVTEGSAGSTAISLATVAPAYGCKCHV-VIP 132

Query: 294 DKGAGDPQRLPLALRTLVDKRLKVYTI-----WTNPDIPTADEANELQELRNISQHTEG 347
           D  A +  ++  AL   V+ R++  +I     + N     ADEANEL   R +   T G
Sbjct: 133 DDAAIEKSQIIEALGASVE-RVRPVSITHKDHYVNIARRRADEANELASKRRLGSETNG 190


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.130    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,197,222
Number of Sequences: 28952
Number of extensions: 852445
Number of successful extensions: 1776
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1771
Number of HSP's gapped (non-prelim): 14
length of query: 905
length of database: 12,070,560
effective HSP length: 88
effective length of query: 817
effective length of database: 9,522,784
effective search space: 7780114528
effective search space used: 7780114528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 64 (29.9 bits)