GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001797-TA|BGIBMGA001797-PA|IPR002737|Protein of unknown
function DUF52
         (304 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25280.1 68415.m03024 expressed protein                            252   2e-67
At5g18510.1 68418.m02185 hypothetical protein                          30   2.2  
At2g28620.1 68415.m03479 kinesin motor protein-related                 29   3.9  

>At2g25280.1 68415.m03024 expressed protein
          Length = 291

 Score =  252 bits (618), Expect = 2e-67
 Identities = 122/261 (46%), Positives = 164/261 (62%), Gaps = 8/261 (3%)

Query: 27  SELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIFILGPS 85
           ++LS  L+ WL+   LT  P  R +IAPH                + P  + RIF+LGPS
Sbjct: 19  TKLSSDLEEWLNATGLTKSPDVRGVIAPHAGYSYSGRAAAYAFANIDPTNISRIFLLGPS 78

Query: 86  HHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYI 145
           HH     CALS+   Y+TP+ +L +D ++  E+ A  +F  MD + DE EHS+EMHLPY+
Sbjct: 79  HHFYTPKCALSTATVYKTPIGNLPVDVEMIKEIRAMGKFGMMDLRVDEAEHSMEMHLPYL 138

Query: 146 AKVMEEYKTSFTIIPILVGSLTPEKEAKYGAILAPYLADPQNLLVISSDFCHWGSRFRYT 205
           AKV E    +  ++PILVG+++PE EA YG +LA Y+ DP+N   +SSDFCHWGSRF Y 
Sbjct: 139 AKVFEG--NNVKVVPILVGAVSPENEAMYGELLAKYVDDPKNFFSVSSDFCHWGSRFNYM 196

Query: 206 WKDSSRGHIYQSIEWLDKLGMDLIEKMDPKAFTDYLNKYGNTICGRHPIGVLLQAISKLS 265
             D++ G I++SIE LDK GMD+IE  DP AF  YL ++ NTICGRHPI + L  +   S
Sbjct: 197 HYDNTHGAIHKSIEALDKKGMDIIETGDPDAFKKYLLEFENTICGRHPISIFLHMLKHSS 256

Query: 266 SQSNAPKMSLKFLKYAQSSQC 286
           S     K+ + FL+Y QSSQC
Sbjct: 257 S-----KIKINFLRYEQSSQC 272


>At5g18510.1 68418.m02185 hypothetical protein
          Length = 702

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/48 (22%), Positives = 26/48 (54%)

Query: 110 IDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFT 157
           I K+     +A   FD +D+  D+ +  +   +P +++V+++ +  FT
Sbjct: 439 IQKESTEAFDARNTFDHLDKDDDDGDIDVSTKVPPLSQVVQKLEEGFT 486


>At2g28620.1 68415.m03479 kinesin motor protein-related 
          Length = 1076

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 101  YQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKT 154
            Y   +Y + +DK +  +L + +   ++DE T       E ++P +  + EE KT
Sbjct: 986  YNHHIYMIELDKIVNRKLNSLKTSTQVDEATSSTPRKREYNIPTVGSI-EELKT 1038


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,384,923
Number of Sequences: 28952
Number of extensions: 243643
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 3
length of query: 304
length of database: 12,070,560
effective HSP length: 81
effective length of query: 223
effective length of database: 9,725,448
effective search space: 2168774904
effective search space used: 2168774904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)