Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001795-TA|BGIBMGA001795-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
         (383 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    29   0.042
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    26   0.52 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   1.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   3.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   3.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   6.4  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   6.4  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   6.4  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   6.4  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   6.4  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   6.4  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   6.4  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   6.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   6.4  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   6.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   8.5  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 29.5 bits (63), Expect = 0.042
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 206 NRILRPAPTPNSPVSAGTSINSTPSSRFPDGYHLNRATPETSLPSP 251
           ++I+ P P   SP +  TS +ST S++ P+   LN    ET +P P
Sbjct: 414 SQIINPQPQITSPSNTNTSTSSTNSNK-PNSSDLNMLIKET-MPLP 457


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%)

Query: 266 EIDATPSPLSTPPH-PQDSTPP 286
           E D+T SPL TPPH P  S PP
Sbjct: 11  EADST-SPLLTPPHNPAYSPPP 31


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 241 RATPETSLPSPLPVTAFPEPPPAYTEIDATPSPLSTPPHPQDSTPPRTQVIT----ATPI 296
           +  P    PSP     F  P P  +    TP+P   P   Q+  PP   ++     +T +
Sbjct: 390 KVEPRDKAPSPYGGQMFEAPIPNVSPHYVTPTPPEAPLF-QNVLPPIGGMMNWNMPSTSV 448

Query: 297 SGDIAN 302
            GD+ N
Sbjct: 449 VGDMLN 454


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 270 TPSPLSTPPHPQDS 283
           TP+P+ +P  PQDS
Sbjct: 316 TPTPMMSPAPPQDS 329


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 250 SPLPVTAFPEPPPAYTEIDATPSPLSTPPHPQDSTP 285
           +P P    PE   + T+   T S    PP P  S P
Sbjct: 430 TPKPGQWVPEKSTSTTQRTTTVSTTEAPPAPAVSNP 465


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 243 TPETSLPSPLPVTAFPEPPPAYTEIDATPSPLSTP 277
           TP T +   +   +    PP   +I A P+P  +P
Sbjct: 312 TPTTVMSPTINCWSLTSSPPPPYQISAQPTPSQSP 346


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 269 ATPSPLSTPPHPQDSTPP 286
           A+P  LST   P  STPP
Sbjct: 111 ASPQDLSTNGAPPRSTPP 128


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 269 ATPSPLSTPPHPQDSTPP 286
           A+P  LST   P  STPP
Sbjct: 111 ASPQDLSTNGAPPRSTPP 128


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 269 ATPSPLSTPPHPQDSTPP 286
           A+P  LST   P  STPP
Sbjct: 111 ASPQDLSTNGAPPRSTPP 128


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 269 ATPSPLSTPPHPQDSTPP 286
           A+P  LST   P  STPP
Sbjct: 111 ASPQDLSTNGAPPRSTPP 128


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 269 ATPSPLSTPPHPQDSTPP 286
           A+P  LST   P  STPP
Sbjct: 111 ASPQDLSTNGAPPRSTPP 128


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 269 ATPSPLSTPPHPQDSTPP 286
           A+P  LST   P  STPP
Sbjct: 67  ASPQDLSTNGAPPRSTPP 84


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 269 ATPSPLSTPPHPQDSTPP 286
           A+P  LST   P  STPP
Sbjct: 111 ASPQDLSTNGAPPRSTPP 128


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 269 ATPSPLSTPPHPQDSTPP 286
           A+P  LST   P  STPP
Sbjct: 111 ASPQDLSTNGAPPRSTPP 128


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 257 FPEPPPAYTEIDATPSPLSTPPHPQDSTPPRT 288
           + E PP   +  ATP   S    P  + PP T
Sbjct: 7   YEESPPPAPQSAATPISSSGMTSPAAAPPPAT 38



 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 251 PLPVTAFPEPPPAYTEIDATPSPLSTPPHPQDST 284
           P PV + P PPP          P  T  +P + T
Sbjct: 205 PEPVPSTPYPPPGSLGSMGVSVPCGTSGNPLEWT 238


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 269 ATPSPLSTPPHPQDSTPP 286
           A+P  LST   P  STPP
Sbjct: 111 ASPQDLSTNGAPPRSTPP 128


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 244 PETSLPSPLPVTAFPEPPPAYTEIDATPSPLSTPPHPQDSTPPRTQVITATPIS 297
           P+  + S L   +  +    +T   A   P++ PP  +  +P R+  I A  +S
Sbjct: 39  PQNYINSYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSSPILAEKVS 92


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,255
Number of Sequences: 317
Number of extensions: 4395
Number of successful extensions: 26
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 18
length of query: 383
length of database: 114,650
effective HSP length: 58
effective length of query: 325
effective length of database: 96,264
effective search space: 31285800
effective search space used: 31285800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)