Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001794-TA|BGIBMGA001794-PA|IPR002110|Ankyrin
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02620.1 68418.m00198 ankyrin repeat family protein contains ... 37 0.051
At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ... 34 0.27
At1g78160.1 68414.m09108 pumilio/Puf RNA-binding domain-containi... 34 0.27
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 33 0.83
At1g23540.1 68414.m02960 protein kinase family protein contains ... 32 1.1
At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein, ... 32 1.4
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 32 1.4
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 32 1.4
At3g15115.1 68416.m01912 expressed protein 31 2.5
At4g21770.1 68417.m03150 pseudouridine synthase family protein c... 31 3.3
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 31 3.3
At1g20180.1 68414.m02522 hypothetical protein similar to At14a (... 31 3.3
At5g40160.1 68418.m04874 ankyrin repeat family protein (EMB506) ... 30 4.4
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 30 4.4
At2g47450.1 68415.m05922 chloroplast signal recognition particle... 30 4.4
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 30 4.4
At4g18240.1 68417.m02709 starch synthase-related protein contain... 30 5.8
At3g50450.1 68416.m05518 hypersensitive response protein 1 (HR1)... 30 5.8
At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) / DNA-... 30 5.8
At3g04140.1 68416.m00438 ankyrin repeat family protein contains ... 30 5.8
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 30 5.8
At1g71160.1 68414.m08211 beta-ketoacyl-CoA synthase family prote... 30 5.8
At4g03440.1 68417.m00471 ankyrin repeat family protein contains ... 29 7.7
At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit... 29 7.7
At1g32585.1 68414.m04021 VQ motif-containing protein-related con... 29 7.7
At1g10710.1 68414.m01219 hypothetical protein 29 7.7
>At5g02620.1 68418.m00198 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 524
Score = 36.7 bits (81), Expect = 0.051
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 565 VNHVNCDGQAALHLSCSLHSKQSPRIHVTHVLLEHSGADLQQGDSKGGDTPIHLAVNSIN 624
V V+ GQ ALH++ + + VL+E G+ + D+KG +TP+H+AV
Sbjct: 186 VTRVDKKGQTALHMAV-----KGQNTEIVDVLMEADGSLINSADNKG-NTPLHIAVRKNR 239
Query: 625 CDLHLVLLLFKTVDR 639
++ +L + V R
Sbjct: 240 AEIVQTVLKYCEVSR 254
>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 491
Score = 34.3 bits (75), Expect = 0.27
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 568 VNCDGQAALHLSCSLHSKQSPRIHVTHVLLEHSGADLQQGDSKGGDTPIHLAVNSINCDL 627
+N D ALH + S++ V LLE AD+ G TP+H+A ++ D+
Sbjct: 280 LNLDESLALHYAVESCSRE-----VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDM 334
Query: 628 HLVLL 632
VLL
Sbjct: 335 VAVLL 339
>At1g78160.1 68414.m09108 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (8 copies at C-terminal half of protein)
Length = 650
Score = 34.3 bits (75), Expect = 0.27
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 299 SPASNIFPTPPRSENV-PSPISESQTSYYPSNSDYTLSPELSPVYCSDYEKYQDLTSYEE 357
S S TP S N+ S S + S+SDY+LS S CS + +S
Sbjct: 12 SSPSTPLRTPLHSPNLFNGDFSVSNRFSFKSSSDYSLSSSFSNGLCSPEDSSSPFSS-PP 70
Query: 358 CPNETDKTRERSTSICSMKMKQFKDLQKEIAAGFSKMECCE-IMRKSCKEILQEHLLK 414
K S+S S FKD +K G + CE + R + KE ++E ++
Sbjct: 71 FNGIIPKHNHTSSSPVSFDSLFFKDHEKSHVNGTDDLGLCEDLYRMNIKEDVEEDQIR 128
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 32.7 bits (71), Expect = 0.83
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 569 NCDGQAALHLSCSLHSKQSPRIHVTHVLLEHSGADLQQGDSKGGDTPI--HLAVNSINCD 626
N DGQ+ALHL+C S + + +LE+ A++ D K GD P+ LA S C
Sbjct: 508 NADGQSALHLACRRGSAE-----LVEAILEYGEANVDIVD-KDGDPPLVFALAAGSPQC- 560
Query: 627 LHLVL 631
+H+++
Sbjct: 561 VHVLI 565
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 32.3 bits (70), Expect = 1.1
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 300 PASNIFPTPPR-SENVPSPISESQTSYYPSNSDYTLSPELSP 340
P SN P+PP SE P+P +ES + P + D P SP
Sbjct: 97 PTSNESPSPPEDSETPPAPPNESNDNNPPPSQDLQSPPPSSP 138
>At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein,
putative very strong similarity to PIF3 like basic Helix
Loop Helix protein 2 (PIL2) [Arabidopsis thaliana]
GI:22535494
Length = 346
Score = 31.9 bits (69), Expect = 1.4
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 115 DSGFVDTKEVVEGLKCLKIEKDEVKSGEKKKQIVVLARKPPKEKVYCRVAKPYDAEDFYR 174
D+ V E EG L D+ +S + + Q+ RK ++ R A+ Y++ +
Sbjct: 127 DTSSVGFTEDSEGSMYLSSSLDD-ESDDARPQVPARTRKALVKRK--RNAEAYNSPE-RN 182
Query: 175 QIKQINRKTLTGGQVLVNSIQTDNYSEVDRALN 207
Q IN+K T +L NS + DN S +D A+N
Sbjct: 183 QRNDINKKMRTLQNLLPNSHKDDNESMLDEAIN 215
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 297 DLSPASNIFPTPPRSENVPSPISESQTSYYPSNSDYTLSPELSPVYCSDYEKYQDLTSYE 356
D SP++ P+PP PS S + T + PS +T +P P C + S+
Sbjct: 64 DPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPS---HTPTPHTPPCNCGSPPSHPSTPSHP 120
Query: 357 ECPN 360
P+
Sbjct: 121 STPS 124
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 297 DLSPASNIFPTPPRSENVPSPISESQTSYYPSNSDYTLSPELSPVYCSDYEKYQDLTSYE 356
D SP++ P+PP PS S + T + PS +T +P P C + S+
Sbjct: 64 DPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPS---HTPTPHTPPCNCGSPPSHPSTPSHP 120
Query: 357 ECPN 360
P+
Sbjct: 121 STPS 124
>At3g15115.1 68416.m01912 expressed protein
Length = 339
Score = 31.1 bits (67), Expect = 2.5
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 104 RSERVDSHSSEDSGFVDTKEVVEGLKCLKIEKD--EVKSGEKKKQIVVLARKPPKEKVYC 161
R +S SS SGF TK+ + + C+ + +S + +++VV ++K P K
Sbjct: 196 REAIANSSSSSSSGFTPTKQNIPKVSCIPRHRPPRNSRSEDAIQELVVKSQKSPNRKTLR 255
Query: 162 RVAKPYDAEDFYRQIKQINRKT 183
+ + +D + +K + +T
Sbjct: 256 KTLSSIETKDI-QMLKDFHIET 276
>At4g21770.1 68417.m03150 pseudouridine synthase family protein
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 472
Score = 30.7 bits (66), Expect = 3.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 549 SEITRNEYREQPPLFNVNHVNCDGQAALHLSCSLHSKQSPRIH 591
S I RE F V H N +A +L +H K+SPR +
Sbjct: 161 SSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVHVHPKRSPRCY 203
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 30.7 bits (66), Expect = 3.3
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
Query: 233 DYHSKESDILSEFFPANQQFYEPIAIVPTSTPEANPIEEFSCANHLNYEDSVDV--TSIL 290
D+HS+E + S+F ++QF + + ++ ++ D + T ++
Sbjct: 129 DFHSEEEE--SQFSSFDEQFLRHLTEAAHRRCLLRRRDGQISSSLVSSSDPTTIHPTDLV 186
Query: 291 NLDHMKDLSPAS--NIFPTPPRSENVPSPISESQTSYYPSNSDYTLSPELSPVYCSDYEK 348
NL + +S N P P PSP+S + SN+ +SP SP S K
Sbjct: 187 NLYRLSAISHVEHQNSNPCPSPGSMTPSPVSGHSSIPADSNNGSRISPGPSPSRSSQSPK 246
Query: 349 YQDLTSYEE 357
+ +S E
Sbjct: 247 SPEASSLPE 255
>At1g20180.1 68414.m02522 hypothetical protein similar to At14a
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 391
Score = 30.7 bits (66), Expect = 3.3
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 14/146 (9%)
Query: 311 SENVPSPISESQTSYYPSNSDYTLSP--ELSPVYCSDYE------KYQDLTSYEECP-NE 361
S + PSP S S S++ +DY L P E D + DL+S E C E
Sbjct: 70 SSSSPSPSSSSDLSFHSHFTDYLLDPPQETLDALMQDSSLDNLIVTFFDLSS-EACDVCE 128
Query: 362 TDKTRERSTSICSMKMKQFKDLQKEIAAGFSKMECCEIMRKSCKEILQEHLLKLNAELRR 421
T + I K+K+ + K + G +EC M C I QE L A L+
Sbjct: 129 TLLQCLQQIKINHNKIKRVMKIGKRVCNGAKTLECSPEM--LCALIFQE--LSRFAALKN 184
Query: 422 KICVEVTRMNLKTCYGVMHHILLSLS 447
+C V + + +L L+
Sbjct: 185 PLCRIVNEAQFRIVHDANSDLLTKLT 210
>At5g40160.1 68418.m04874 ankyrin repeat family protein (EMB506)
identical to ankyrin repeat protein EMB506 [Arabidopsis
thaliana] GI:5911312; contains ankyrin repeats,
Pfam:PF00023
Length = 315
Score = 30.3 bits (65), Expect = 4.4
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 571 DGQAALHLSCSLHSKQSPRIHVTHVLLEHSGADLQQGDSKGGDTPIHLAVNSINCDLHLV 630
DG A +H + + + Q+ + LL D+ D++G TP+H+AV S N D+ +
Sbjct: 217 DGAAPIHYAVQVGALQTVK------LLFKYNVDVNVADNEGW-TPLHIAVQSRNRDITKI 269
Query: 631 LL 632
LL
Sbjct: 270 LL 271
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 30.3 bits (65), Expect = 4.4
Identities = 18/49 (36%), Positives = 21/49 (42%)
Query: 298 LSPASNIFPTPPRSENVPSPISESQTSYYPSNSDYTLSPELSPVYCSDY 346
LSPAS PT P S + SY PS+ Y+ S S DY
Sbjct: 1747 LSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDY 1795
>At2g47450.1 68415.m05922 chloroplast signal recognition particle
component (CAO) nearly identical to CAO [Arabidopsis
thaliana] GI:4102582
Length = 373
Score = 30.3 bits (65), Expect = 4.4
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 564 NVNHVNCDGQAALHLSCSLHSKQSPRIHVTHVLLEHSGADLQQGDSKGGDTPIHLAVNSI 623
+V+ V+ +G+ AL L S + R LL +GADL D +GG T +H+A +
Sbjct: 152 DVDAVDENGRTALLFVAGLGSDKCVR------LLAEAGADLDHRDMRGGLTALHMAAGYV 205
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 30.3 bits (65), Expect = 4.4
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 331 DYTLSPELSPVYCSDYEKYQDLTSY-EECPNETDKTRERSTSICSMKMKQFKDLQKE 386
D+++ E++ ++ + DL E +ET+K E ++ +C ++KQ D +K+
Sbjct: 1137 DFSIDDEMTNKLAAENKDLYDLVDLLERKIDETEKKYEEASKLCEERLKQVVDTEKK 1193
>At4g18240.1 68417.m02709 starch synthase-related protein contains
similarity to starch synthase GI:4582783 from [Vigna
unguiculata]
Length = 1040
Score = 29.9 bits (64), Expect = 5.8
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 54 VQAQNEDKPNPVEKILENLQKLEIAKENTRXXXXXXXXXXXXXXXIEEDRRSERVDSHSS 113
V QN+D N V+KI E+L++ + KE++ +EE + S
Sbjct: 378 VLQQNQDLRNKVDKIEESLKEANVYKESSEKIQQYNELMQHKVTLLEERLEKSDAEIFSY 437
Query: 114 EDSGFVDTKEVVEGLKCLKIEKDEVKSGEK 143
KE E L+ LK E+ + KS ++
Sbjct: 438 VQLYQESIKEFQETLESLK-EESKKKSRDE 466
>At3g50450.1 68416.m05518 hypersensitive response protein 1 (HR1)
identical to HR1 [Arabidopsis thaliana] GI:12958166;
contains Pfam profile PF05659: Arabidopsis
broad-spectrum mildew resistance protein RPW8
Length = 189
Score = 29.9 bits (64), Expect = 5.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 481 LSLLKSAVLRCSHRPFLTRCVVQAIRTSLKSNPELYAGKDCIFTEVD 527
L LL A++R R +TRC++ + +L D + EVD
Sbjct: 16 LQLLHDAIIRAKERSLITRCILDRLDATLHKITPFVIKIDTLTEEVD 62
>At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) /
DNA-repair protein, putative identical to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472; similar to Swiss-Prot:P14629
DNA-repair protein complementing XP-G cells homolog
(Xeroderma pigmentosum group G complementing protein
homolog) [Xenopus laevis]
Length = 1479
Score = 29.9 bits (64), Expect = 5.8
Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 1/147 (0%)
Query: 114 EDSGFVDTKEVVEGLKCLKIEKDEVKSGEKKKQIVVLARKPPKEKVYCRVAKPYDAEDFY 173
E +GF+D K+ +G + ++ S K + +V +R P + V R+ +D D
Sbjct: 799 EITGFLDEKDNADGESSIMMDDKRDYSRRKIQSLVTESRDPSRNVVRSRIGILHDT-DSQ 857
Query: 174 RQIKQINRKTLTGGQVLVNSIQTDNYSEVDRALNSVKEIAQTSQQEQGYWEDVQDMIDGD 233
+ ++ N + ++ + V+ + +++E + QE D Q ++ +
Sbjct: 858 NERREENNSNEHTFNIDSSTDFEEKGVPVEFSEANIEEEIRVLDQEFVSLGDEQRKLERN 917
Query: 234 YHSKESDILSEFFPANQQFYEPIAIVP 260
S S++ +E Q F P I P
Sbjct: 918 AESVSSEMFAECQELLQIFGIPYIIAP 944
>At3g04140.1 68416.m00438 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 656
Score = 29.9 bits (64), Expect = 5.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 565 VNHVNCDGQAALHLSCSLHSKQSPRIHVTHVLLEHSGADLQQGDSKG 611
VN NC+G+ +HL+ + + + R V +L+ G DL DS G
Sbjct: 335 VNVRNCNGRTVIHLAV-MDNLNAVRPDVVEILMRIPGVDLNVVDSYG 380
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 29.9 bits (64), Expect = 5.8
Identities = 17/74 (22%), Positives = 32/74 (43%)
Query: 409 QEHLLKLNAELRRKICVEVTRMNLKTCYGVMHHILLSLSKSGDDEDLQYSLFGLICERVL 468
Q H++ N R ++ ++ L+ C+ + ++G+ +DL + LI ER
Sbjct: 113 QSHVMGHNRLTRHRLVIQCKNPQLRWCFSCQSLLPFDNEENGEKKDLLLEVVKLIRERSP 172
Query: 469 AQKPALFADDFGLS 482
A F +F S
Sbjct: 173 NTYSASFETEFSCS 186
>At1g71160.1 68414.m08211 beta-ketoacyl-CoA synthase family protein
similar to fatty acid elongase 3-ketoacyl-CoA synthase 1
GB:AAC99312, very-long-chain fatty acid condensing
enzyme CUT1 [GI:5001734]
Length = 460
Score = 29.9 bits (64), Expect = 5.8
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 541 GDAYALVLS--EITRNEYREQ-PPLFNVNHVNCDGQAALHLSCSLHSKQSPRIHVTHVLL 597
GD+ ALVLS ++ N YR + + N + G AA+ LS + + H++
Sbjct: 201 GDSLALVLSMEAVSPNGYRGKCKSMLIANTIFRMGGAAILLSNRKQDSHKAKYKLQHIIR 260
Query: 598 EHSGADLQQGDS 609
H G+D + +S
Sbjct: 261 THVGSDTESYES 272
>At4g03440.1 68417.m00471 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 751
Score = 29.5 bits (63), Expect = 7.7
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 564 NVNHVNCDGQAALHLSCSLHSKQSPRIHVTHVLLEHSGADLQQGDSKGGDTPIHLAVNSI 623
+V +N +GQ H+S S +S + H+ + L + G+TP+HLA +I
Sbjct: 407 SVEQLNKEGQNIFHISAK--SGKSTLFLMEHINKVDTKNHLMEEQDMDGNTPLHLA--TI 462
Query: 624 NCDLHLVLLLFKTVDRKSWKNLAYLRNRSFVSPFDYA 660
N V +L K + + K L N + P D A
Sbjct: 463 NWRPKTVRMLTKFLSIR--KKLLDKHNSVGLRPLDIA 497
>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 170
Score = 29.5 bits (63), Expect = 7.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 276 NHLNYEDSVDVTSILNLDHMKDLSP 300
N+LN +D + +T DHMKD+SP
Sbjct: 113 NYLNVQDLLGLTCQTVADHMKDMSP 137
>At1g32585.1 68414.m04021 VQ motif-containing protein-related
contains weak similarity to Pfma:PF05678 VQ motif
Length = 220
Score = 29.5 bits (63), Expect = 7.7
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 198 NYSEVDRALNSVKEIAQTSQQEQGYWEDVQD---MIDGDYHSKESDILSEFFPANQQFY- 253
NY +++ NSV ++AQT + Q Y D D ++ + D L + P +Q
Sbjct: 18 NYDQLNADSNSVPQLAQTQPRVQVYIIDKNDFKSLVQQLTSPQPCDRLPQNIPKHQDIRP 77
Query: 254 EPIAIVPTSTPEANPIEE 271
EPI + P A ++E
Sbjct: 78 EPINWTSSIPPSAMAVQE 95
>At1g10710.1 68414.m01219 hypothetical protein
Length = 294
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 297 DLSPASNIFPTPPRSENVPSPISESQTSYYPSNSDYTLSPELSPVY 342
D +P+ IFP+ E +P P E+ + YPS S P L P +
Sbjct: 193 DYNPSIEIFPSSV-PEVLPRPEYEAGQALYPSQSTLNQIPSLPPSF 237
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.131 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,942,273
Number of Sequences: 28952
Number of extensions: 682649
Number of successful extensions: 2404
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2385
Number of HSP's gapped (non-prelim): 40
length of query: 684
length of database: 12,070,560
effective HSP length: 86
effective length of query: 598
effective length of database: 9,580,688
effective search space: 5729251424
effective search space used: 5729251424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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