Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001792-TA|BGIBMGA001792-PA|undefined
(141 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45700.1 68415.m05682 sterile alpha motif (SAM) domain-contai... 60 6e-10
At1g19025.1 68414.m02368 DNA cross-link repair protein-related c... 55 2e-08
At1g27410.1 68414.m03341 DNA cross-link repair protein-related c... 54 4e-08
At3g26680.2 68416.m03336 DNA cross-link repair protein-related c... 51 3e-07
At3g26680.1 68416.m03335 DNA cross-link repair protein-related c... 51 3e-07
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 39 0.001
At2g01730.1 68415.m00101 metallo-beta-lactamase family protein s... 38 0.002
At1g61010.2 68414.m06870 cleavage and polyadenylation specificit... 35 0.024
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit... 35 0.024
At3g19970.1 68416.m02527 expressed protein 31 0.29
At5g13940.1 68418.m01630 hypothetical protein 29 1.2
At2g13290.2 68415.m01465 glycosyl transferase family 17 protein ... 29 1.6
At2g13290.1 68415.m01464 glycosyl transferase family 17 protein ... 29 1.6
At3g16470.1 68416.m02101 jacalin lectin family protein contains ... 28 2.1
At4g03500.1 68417.m00477 ankyrin repeat family protein contains ... 27 4.8
At5g28080.1 68418.m03391 protein kinase family protein contains ... 26 8.4
At4g33150.2 68417.m04723 lysine-ketoglutarate reductase/saccharo... 26 8.4
At4g33150.1 68417.m04722 lysine-ketoglutarate reductase/saccharo... 26 8.4
At3g54070.1 68416.m05978 ankyrin repeat family protein contains ... 26 8.4
>At2g45700.1 68415.m05682 sterile alpha motif (SAM)
domain-containing protein similar to SNM1 protein [Mus
musculus] GI:7595835; contains Pfam profile PF00536: SAM
domain (Sterile alpha motif)
Length = 723
Score = 60.1 bits (139), Expect = 6e-10
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 9 LNVKTIPAGHCLGSVMFLFE-INNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
++V A HC GS+M LFE N + +L+TGDFR + E + H I+++ L
Sbjct: 475 IDVTCFDANHCPGSIMILFEPANGKAVLHTGDFRYSEEMSNWLIGSH-------ISSLIL 527
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILN 127
DTT+ N +D FP+++ I+ +V I+ T + L S G E +F E+ +L
Sbjct: 528 DTTYCNPQYD-FPKQEAVIQFVVEAIQAEAFNPKT--LFLIGSYTIGKERLFLEVARVLR 584
Query: 128 MKTYVSDDKWAL 139
K Y++ K L
Sbjct: 585 EKIYINPAKLKL 596
>At1g19025.1 68414.m02368 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 549
Score = 54.8 bits (126), Expect = 2e-08
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 1 MDDGSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAF-----GQLHK 55
+DD ++ V A HC G+VMFLFE + IL+TGD R+ + + + G+ H
Sbjct: 85 VDDPDGEF-KVTAFDANHCPGAVMFLFEGSFGNILHTGDCRLTLDCLHSLPEKYVGRSHG 143
Query: 56 DNMPIKINTIYLDTTFQNESF-DNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYG 114
+ I+LD TF S FP + +IR ++N I W P + G
Sbjct: 144 MKPKCSLGYIFLDCTFGKSSHSQRFPTKHSAIRQIINCI--W--NHPDAPVVYLACDMLG 199
Query: 115 YEFVFNEIYNILNMKTYV 132
E V E+ K YV
Sbjct: 200 QEDVLLEVSRTFGSKIYV 217
>At1g27410.1 68414.m03341 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 422
Score = 54.0 bits (124), Expect = 4e-08
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 4 GSHKYLNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPE-NISAFGQLHKDNMPIKI 62
GS L++ I A HC GS+MFLF + LYTGDFR + + + A L +
Sbjct: 81 GSTVRLHLMAIDAHHCPGSIMFLFRGDFGCFLYTGDFRWDSDASDEARTTLVAAIDEFPV 140
Query: 63 NTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEI 122
+ +YLD T+ N + +FP R +++++ + I P++ I + + G E + +
Sbjct: 141 DILYLDNTYCNPIY-SFPSRLVAVQLVADIIA----SHPSHDIIIAVDS-LGKEDLLVHV 194
Query: 123 YNILNMKTYV 132
ILN+K +V
Sbjct: 195 SRILNIKIWV 204
>At3g26680.2 68416.m03336 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 484
Score = 51.2 bits (117), Expect = 3e-07
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTI-LYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
+ V I A HC G+ + F + + T L+TGDFR + + Q H +++ +YL
Sbjct: 229 IKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQM-----QTHPLLFNQRVHVLYL 283
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILN 127
DTT+ N + FP ++D + +V K ++ +P I + S G E V+ I L
Sbjct: 284 DTTYCNPRY-KFPSKEDVLSYVVRITKDFLRKQPKTLIVV-GSYSIGKECVYLAIAKALG 341
Query: 128 MKTYVS 133
+K + +
Sbjct: 342 VKIFAN 347
>At3g26680.1 68416.m03335 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 484
Score = 51.2 bits (117), Expect = 3e-07
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTI-LYTGDFRMNPENISAFGQLHKDNMPIKINTIYL 67
+ V I A HC G+ + F + + T L+TGDFR + + Q H +++ +YL
Sbjct: 229 IKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQM-----QTHPLLFNQRVHVLYL 283
Query: 68 DTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILN 127
DTT+ N + FP ++D + +V K ++ +P I + S G E V+ I L
Sbjct: 284 DTTYCNPRY-KFPSKEDVLSYVVRITKDFLRKQPKTLIVV-GSYSIGKECVYLAIAKALG 341
Query: 128 MKTYVS 133
+K + +
Sbjct: 342 VKIFAN 347
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 38.7 bits (86), Expect = 0.001
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 11 VKTIPAGHCLGSVMFLFEINNQT-----ILYTGDFRMNPENISAFGQLHKDNMPIKINTI 65
V I A HC G+V FLF++ ++ ++TGDFR E F N + + +
Sbjct: 140 VVLIEANHCPGAVQFLFKVKLESSGFEKYVHTGDFRFCDE--MRFDPFL--NGFVGCDGV 195
Query: 66 YLDTTFQNESFDNFPRRKDSIRMLVNHI 93
+LDTT+ N F FP +++S+ +V+ I
Sbjct: 196 FLDTTYCNPKF-VFPSQEESVGYVVSVI 222
>At2g01730.1 68415.m00101 metallo-beta-lactamase family protein
simliar to SP|P79101 Cleavage and polyadenylation
specificity factor, 73 kDa subunit (CPSF 73 kDa subunit)
{Bos taurus}; contains Pfam profile PF00753:
Metallo-beta-lactamase superfamily
Length = 613
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 9 LNVKTIPAGHCLGSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLD 68
L ++ AGH LG+VM ++ + I+YTGD+ M + ++ + + + I+
Sbjct: 147 LQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYA 206
Query: 69 TTFQNESFDNFPRRKDSIR 87
TT + +PR ++ ++
Sbjct: 207 TTIRG---SKYPREREFLQ 222
>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 34.7 bits (76), Expect = 0.024
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDF 40
AGH LG+ MF+ +I ILYTGD+
Sbjct: 166 AGHVLGAAMFMVDIAGVRILYTGDY 190
>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 34.7 bits (76), Expect = 0.024
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 16 AGHCLGSVMFLFEINNQTILYTGDF 40
AGH LG+ MF+ +I ILYTGD+
Sbjct: 166 AGHVLGAAMFMVDIAGVRILYTGDY 190
>At3g19970.1 68416.m02527 expressed protein
Length = 434
Score = 31.1 bits (67), Expect = 0.29
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 81 RRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGY 115
+ + +I LVNH+ W+D E + HT + G+
Sbjct: 210 KAEKNIESLVNHLADWLDEEQKKNLVFHTFSNTGW 244
>At5g13940.1 68418.m01630 hypothetical protein
Length = 395
Score = 29.1 bits (62), Expect = 1.2
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 43 NPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPT 102
N E A ++ N+PI +N LDT F FPR D + + K WV
Sbjct: 11 NEEIQVALSAQYRLNLPIVVNEAKLDTKLLTRYFSKFPR--DDLPHFAD--KTWVWDRSY 66
Query: 103 NRIALHTSARY 113
+ L + RY
Sbjct: 67 ESLLLPSQNRY 77
>At2g13290.2 68415.m01465 glycosyl transferase family 17 protein low
similarity to beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
from Mus musculus [SP|Q10470], Rattus norvegicus
[SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
profile PF04724 :Glycosyltransferase family 17
Length = 361
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 95 QWVDGEPTNRIALHTSAR-YGYEFVFNEIYNILNMKTYVSDDKWALYR 141
QW DG P +H R Y Y F F Y+ ++ KW YR
Sbjct: 205 QWCDGIPD---VMHLEMREYMYSFEFPVDYSSWRASVHIYSRKWTQYR 249
>At2g13290.1 68415.m01464 glycosyl transferase family 17 protein low
similarity to beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
from Mus musculus [SP|Q10470], Rattus norvegicus
[SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
profile PF04724 :Glycosyltransferase family 17
Length = 361
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 95 QWVDGEPTNRIALHTSAR-YGYEFVFNEIYNILNMKTYVSDDKWALYR 141
QW DG P +H R Y Y F F Y+ ++ KW YR
Sbjct: 205 QWCDGIPD---VMHLEMREYMYSFEFPVDYSSWRASVHIYSRKWTQYR 249
>At3g16470.1 68416.m02101 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase-binding protein homolog
[Arabidopsis thaliana] GI:2997767
Length = 451
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 21 GSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNM---PIKINTIYLDTTFQNESFD 77
G ++ L E QT+L T +F ++PE+ + +++ + + PI+I T + TF+ ++
Sbjct: 202 GKIVSL-EHGKQTLLGTEEFEIDPEDYITYVKVYYEKLFGSPIEIVTALIFKTFKGKTSQ 260
Query: 78 NF 79
F
Sbjct: 261 PF 262
>At4g03500.1 68417.m00477 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 652
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 82 RKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVSDD 135
RKD + L++ ++ R +L A GY F+ +++ K YVSDD
Sbjct: 259 RKDILDALLSKDASLINLRDEGRTSLSFGASIGYYQGFSYLFDKNRDKVYVSDD 312
>At5g28080.1 68418.m03391 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 406
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 2 DDGSHKYLNVKTIPAGHCLGSVMFLFEINNQTIL 35
D+G +L +KT+ C+ ++ F F+I T +
Sbjct: 286 DNGDGLFLRLKTVNKEGCVRNIYFPFDIETDTAI 319
>At4g33150.2 68417.m04723 lysine-ketoglutarate
reductase/saccharopine dehydrogenase bifunctional enzyme
identical to lysine-ketoglutarate reductase/saccharopine
dehydrogenase GI:2052508 from [Arabidopsis thaliana]
Length = 1064
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 21 GSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNF 79
GS+ F +N T++ + FR NP N S + + D + + + L T F E+ +F
Sbjct: 356 GSIEF---VNRATLIDSPFFRFNPSNNSYYDDMDGDGV-LCMAVDILPTEFAKEASQHF 410
>At4g33150.1 68417.m04722 lysine-ketoglutarate
reductase/saccharopine dehydrogenase bifunctional enzyme
identical to lysine-ketoglutarate reductase/saccharopine
dehydrogenase GI:2052508 from [Arabidopsis thaliana]
Length = 1064
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 21 GSVMFLFEINNQTILYTGDFRMNPENISAFGQLHKDNMPIKINTIYLDTTFQNESFDNF 79
GS+ F +N T++ + FR NP N S + + D + + + L T F E+ +F
Sbjct: 356 GSIEF---VNRATLIDSPFFRFNPSNNSYYDDMDGDGV-LCMAVDILPTEFAKEASQHF 410
>At3g54070.1 68416.m05978 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 574
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 103 NRIALHTSARYGYEFVFNEIYNILNMKTYVSDDK 136
NR H +A Y +E +F+ IY + +K ++ K
Sbjct: 289 NRTLFHVAALYRHENIFSLIYELGGIKDLIASYK 322
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.138 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,593,205
Number of Sequences: 28952
Number of extensions: 141564
Number of successful extensions: 235
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 19
length of query: 141
length of database: 12,070,560
effective HSP length: 74
effective length of query: 67
effective length of database: 9,928,112
effective search space: 665183504
effective search space used: 665183504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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