BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001791-TA|BGIBMGA001791-PA|undefined (163 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g20750.1 68414.m02599 helicase-related similar to BRCA1-bindi... 27 4.7 At3g08960.1 68416.m01047 importin beta-2 subunit family protein ... 27 6.2 At2g41770.1 68415.m05163 expressed protein contains Pfam domain ... 27 6.2 At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 27 8.2 At2g12875.1 68415.m01402 hypothetical protein 27 8.2 >At1g20750.1 68414.m02599 helicase-related similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens].; Length = 1179 Score = 27.5 bits (58), Expect = 4.7 Identities = 10/21 (47%), Positives = 17/21 (80%) Query: 67 KGDQNADEKIVVMLEDQKNIR 87 +G +N DEK ++L+D+KNI+ Sbjct: 168 QGKENVDEKCRLLLKDKKNIK 188 >At3g08960.1 68416.m01047 importin beta-2 subunit family protein low similarity to Lph2p [Saccharomyces cerevisiae] GI:1163089; contains Pfam profile PF03810: Importin-beta N-terminal domain Length = 754 Score = 27.1 bits (57), Expect = 6.2 Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 24 RKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGIDKGDQNAD 73 RK N + +T+ ++ ++PN+++ + + L R+F A +++ QN + Sbjct: 301 RKKNAS-NTVGGIVSSLLPNERIVLLCNVLVRRYFVLTASDLEEWYQNPE 349 >At2g41770.1 68415.m05163 expressed protein contains Pfam domain PF03385: Protein of unknown function, DUF288 Length = 771 Score = 27.1 bits (57), Expect = 6.2 Identities = 15/44 (34%), Positives = 21/44 (47%) Query: 23 VRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGID 66 VRK+ G I K+ D EV D +HFD + +G+D Sbjct: 184 VRKSVGYLFAIQHGAKKIYDADDRGEVIDGDLGKHFDVELVGLD 227 >At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Length = 874 Score = 26.6 bits (56), Expect = 8.2 Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 39 KVVPNDKVNEVADSLTNRHFDNKALGIDKGDQNADEKIVVMLEDQKNIRR 88 KV +D V E+A +++ D K + + NA + + +EDQK +RR Sbjct: 460 KVKMHDVVREMALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKAVRR 509 >At2g12875.1 68415.m01402 hypothetical protein Length = 325 Score = 26.6 bits (56), Expect = 8.2 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 2 ENDKDEKEYSTTI-SNAYILLQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDN 60 E ++++K+ TT S I++ V+K G K + K S T ++ Sbjct: 48 EKEEEKKKGMTTKESPPMIIMPVKKKTGLKRKRGVATKLIDKGTKATTEEPSSTEQNKAI 107 Query: 61 KALGIDKGDQNADEK 75 +A+ DK D+N +EK Sbjct: 108 EAVKEDKYDKNEEEK 122 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.316 0.131 0.359 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,429,629 Number of Sequences: 28952 Number of extensions: 123847 Number of successful extensions: 330 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 327 Number of HSP's gapped (non-prelim): 5 length of query: 163 length of database: 12,070,560 effective HSP length: 76 effective length of query: 87 effective length of database: 9,870,208 effective search space: 858708096 effective search space used: 858708096 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits) S2: 56 (26.6 bits)
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