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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001791-TA|BGIBMGA001791-PA|undefined
         (163 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20750.1 68414.m02599 helicase-related similar to BRCA1-bindi...    27   4.7  
At3g08960.1 68416.m01047 importin beta-2 subunit family protein ...    27   6.2  
At2g41770.1 68415.m05163 expressed protein contains Pfam domain ...    27   6.2  
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ...    27   8.2  
At2g12875.1 68415.m01402 hypothetical protein                          27   8.2  

>At1g20750.1 68414.m02599 helicase-related similar to BRCA1-binding
           helicase-like protein BACH1 (GI:13661819) Homo
           sapiens].;
          Length = 1179

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)

Query: 67  KGDQNADEKIVVMLEDQKNIR 87
           +G +N DEK  ++L+D+KNI+
Sbjct: 168 QGKENVDEKCRLLLKDKKNIK 188


>At3g08960.1 68416.m01047 importin beta-2 subunit family protein low
           similarity to Lph2p [Saccharomyces cerevisiae]
           GI:1163089; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 754

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 24  RKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGIDKGDQNAD 73
           RK N + +T+  ++  ++PN+++  + + L  R+F   A  +++  QN +
Sbjct: 301 RKKNAS-NTVGGIVSSLLPNERIVLLCNVLVRRYFVLTASDLEEWYQNPE 349


>At2g41770.1 68415.m05163 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 771

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 23  VRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDNKALGID 66
           VRK+ G    I     K+   D   EV D    +HFD + +G+D
Sbjct: 184 VRKSVGYLFAIQHGAKKIYDADDRGEVIDGDLGKHFDVELVGLD 227


>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 874

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 39  KVVPNDKVNEVADSLTNRHFDNKALGIDKGDQNADEKIVVMLEDQKNIRR 88
           KV  +D V E+A  +++   D K   +   + NA  + +  +EDQK +RR
Sbjct: 460 KVKMHDVVREMALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKAVRR 509


>At2g12875.1 68415.m01402 hypothetical protein
          Length = 325

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 2   ENDKDEKEYSTTI-SNAYILLQVRKNNGNKSTIDALIHKVVPNDKVNEVADSLTNRHFDN 60
           E ++++K+  TT  S   I++ V+K  G K         +    K      S T ++   
Sbjct: 48  EKEEEKKKGMTTKESPPMIIMPVKKKTGLKRKRGVATKLIDKGTKATTEEPSSTEQNKAI 107

Query: 61  KALGIDKGDQNADEK 75
           +A+  DK D+N +EK
Sbjct: 108 EAVKEDKYDKNEEEK 122


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,629
Number of Sequences: 28952
Number of extensions: 123847
Number of successful extensions: 330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 5
length of query: 163
length of database: 12,070,560
effective HSP length: 76
effective length of query: 87
effective length of database: 9,870,208
effective search space: 858708096
effective search space used: 858708096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)

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