BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001790-TA|BGIBMGA001790-PA|IPR011028|Cyclin-like, IPR006671|Cyclin, N-terminal (361 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63 SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9 SB_48625| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4 SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4 >SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 93 Score = 32.3 bits (70), Expect = 0.63 Identities = 13/26 (50%), Positives = 18/26 (69%) Query: 138 LVSISQSACTAGDVSRMSRVIQDKLG 163 L+ +S +CT D+ RM R+I DKLG Sbjct: 14 LIGVSGLSCTPSDLLRMERIILDKLG 39 >SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 662 Score = 30.7 bits (66), Expect = 1.9 Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 116 MNISIDEYAARTNIKRTVSIEELVSISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 172 +N ID Y T + E+V + ++ + +R +R ++ + G+ RGT VT Sbjct: 76 LNYVIDAYRQATQESHGYLLREIVRLGETRAGSSASTRGTRAVRTRGGITRGTPRVT 132 >SB_48625| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 140 Score = 29.9 bits (64), Expect = 3.4 Identities = 16/47 (34%), Positives = 23/47 (48%) Query: 44 QKSQPKLRLPAESESGEVTTGARDGAAHVLRCLKVWFDLPADVLIGA 90 Q+ P LR E+ +T AR+ VL C K WFD + ++ A Sbjct: 64 QRRLPLLRNATVGEAEGLTEFARECTPRVLSCRKNWFDCAKNKVMNA 110 >SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 727 Score = 29.5 bits (63), Expect = 4.4 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 36 LNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVLRCLKVWF--DLPADVLIG 89 LN L E S+ LR+ A GEVT D ++ C KV++ +P + +G Sbjct: 512 LNHTLDREVVSKHSLRVTASDRGGEVTVNVLDSNDNIPVCDKVYYTISIPENTSVG 567 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.320 0.131 0.387 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,590,192 Number of Sequences: 59808 Number of extensions: 315895 Number of successful extensions: 742 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 738 Number of HSP's gapped (non-prelim): 4 length of query: 361 length of database: 16,821,457 effective HSP length: 83 effective length of query: 278 effective length of database: 11,857,393 effective search space: 3296355254 effective search space used: 3296355254 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 61 (28.7 bits)
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