BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001790-TA|BGIBMGA001790-PA|IPR011028|Cyclin-like, IPR006671|Cyclin, N-terminal (361 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00055-11|AAN65307.1| 290|Caenorhabditis elegans Hypothetical p... 30 2.9 U00055-10|AAN65306.1| 181|Caenorhabditis elegans Hypothetical p... 30 2.9 U00055-9|AAL06042.1| 309|Caenorhabditis elegans Hypothetical pr... 30 2.9 U00055-8|AAL06043.1| 311|Caenorhabditis elegans Hypothetical pr... 30 2.9 >U00055-11|AAN65307.1| 290|Caenorhabditis elegans Hypothetical protein R02F2.1d protein. Length = 290 Score = 29.9 bits (64), Expect = 2.9 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 8/99 (8%) Query: 23 RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 80 +D + S Q L L LL Q P SGE G R+ C Sbjct: 2 QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 55 Query: 81 DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119 L D A+++FDR +T +K+ +V C+ V ++I+ Sbjct: 56 GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 94 >U00055-10|AAN65306.1| 181|Caenorhabditis elegans Hypothetical protein R02F2.1c protein. Length = 181 Score = 29.9 bits (64), Expect = 2.9 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 8/99 (8%) Query: 23 RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 80 +D + S Q L L LL Q P SGE G R+ C Sbjct: 21 QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 74 Query: 81 DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119 L D A+++FDR +T +K+ +V C+ V ++I+ Sbjct: 75 GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 113 >U00055-9|AAL06042.1| 309|Caenorhabditis elegans Hypothetical protein R02F2.1a protein. Length = 309 Score = 29.9 bits (64), Expect = 2.9 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 8/99 (8%) Query: 23 RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 80 +D + S Q L L LL Q P SGE G R+ C Sbjct: 21 QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 74 Query: 81 DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119 L D A+++FDR +T +K+ +V C+ V ++I+ Sbjct: 75 GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 113 >U00055-8|AAL06043.1| 311|Caenorhabditis elegans Hypothetical protein R02F2.1b protein. Length = 311 Score = 29.9 bits (64), Expect = 2.9 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 8/99 (8%) Query: 23 RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 80 +D + S Q L L LL Q P SGE G R+ C Sbjct: 21 QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 74 Query: 81 DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119 L D A+++FDR +T +K+ +V C+ V ++I+ Sbjct: 75 GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 113 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.320 0.131 0.387 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,038,156 Number of Sequences: 27539 Number of extensions: 237237 Number of successful extensions: 575 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 571 Number of HSP's gapped (non-prelim): 4 length of query: 361 length of database: 12,573,161 effective HSP length: 82 effective length of query: 279 effective length of database: 10,314,963 effective search space: 2877874677 effective search space used: 2877874677 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 60 (28.3 bits)
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