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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001790-TA|BGIBMGA001790-PA|IPR011028|Cyclin-like,
IPR006671|Cyclin, N-terminal
         (361 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc...    33   0.30 
At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2...    32   0.52 
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li...    31   1.2  
At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin [...    30   2.8  
At2g29680.2 68415.m03608 cell division control protein CDC6, put...    29   3.6  
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina...    29   4.8  
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina...    29   4.8  
At1g50710.1 68414.m05702 expressed protein                             29   4.8  
At5g43080.1 68418.m05259 cyclin, putative similar to A-type cycl...    29   6.4  
At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc...    29   6.4  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    29   6.4  
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas...    28   8.4  

>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
           2b protein [Arabidopsis thaliana] GI:509423; contains
           Pfam profiles PF00134: Cyclin, N-terminal domain,
           PF02984: Cyclin, C-terminal domain; identical to cDNA
           cyc2a mRNA for cyclin 2a protein GI:728518
          Length = 429

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 80  FDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEELV 139
           FDL  + L   +NL DRFL+K  V    +  + +  + +     A +        +E+LV
Sbjct: 218 FDLINETLFLTVNLIDRFLSKQNVMRKKLQLVGLVALLL-----ACKYEEVSVPVVEDLV 272

Query: 140 SISQSACTAGDVSRMSRVIQDKL 162
            IS  A T  DV  M + +   L
Sbjct: 273 LISDKAYTRNDVLEMEKTMLSTL 295


>At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2b
           protein [Arabidopsis thaliana] GI:509423
          Length = 429

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 80  FDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEELV 139
           F+L  + L   +NL DRFL+K  V    +  + +  + ++         I     +E+LV
Sbjct: 219 FELMNETLFLTVNLIDRFLSKQAVARKKLQLVGLVALLLACKYEEVSVPI-----VEDLV 273

Query: 140 SISQSACTAGDVSRMSRVIQDKL 162
            IS  A T  DV  M +++   L
Sbjct: 274 VISDKAYTRTDVLEMEKIMLSTL 296


>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
           protein [Nicotiana tabacum] GI:1064931, A-type cyclin
           [Catharanthus roseus] GI:2190259; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 327

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 24  DDVDSAQQLYATLNEYLLLEQKSQPKLRLP---AESESGEVTTGARDGAAHVLRCLKVWF 80
           DD        + + EYL  E + +PKLR      E    ++T   R      L  +   F
Sbjct: 48  DDPQMCGLYVSDIYEYLR-ELEVKPKLRPLHDYIEKIQEDITPSKRGVLVDWLVEVAEEF 106

Query: 81  DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEELVS 140
           +L ++ L   ++  DRFL+   V    +  + VS M I     A++   KR   +E+   
Sbjct: 107 ELVSETLYLTVSYIDRFLSLKMVNEHWLQLVGVSAMFI-----ASKYEEKRRPKVEDFCY 161

Query: 141 ISQSACTAGDVSRMSRVI 158
           I+ +  T  DV +M   I
Sbjct: 162 ITANTYTKQDVLKMEEDI 179


>At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin
           [Arabidopsis thaliana] GI:1360646
          Length = 445

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 39  YLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVLRCLKVWFDLPADVLIGAINLFDRFL 98
           Y  +E++SQPK+ +  ++E  E     R      L  + + F+L  + L   +N+ DRFL
Sbjct: 190 YKEVEKESQPKMYMHIQTEMNEKM---RAILIDWLLEVHIKFELNLETLYLTVNIIDRFL 246

Query: 99  TKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEELVSISQSACTAGDVSRMSRVI 158
           +   V    +  + +S + I     A++        + +LV ++ +A ++  +  M + I
Sbjct: 247 SVKAVPKRELQLVGISALLI-----ASKYEEIWPPQVNDLVYVTDNAYSSRQILVMEKAI 301

Query: 159 QDKL 162
              L
Sbjct: 302 LGNL 305


>At2g29680.2 68415.m03608 cell division control protein CDC6,
           putative almost identical to DNA replication protein
           CDC6 GI:18056480 from [Arabidopsis thaliana];  identical
           to cDNA CDC6 protein (2g29680 gene) GI:18056479
          Length = 508

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 43  EQKSQPKLRLPAESESGEVTTGARDGAAHVLRCLKVWFDLPADVLIG---AINLFDRFLT 99
           +Q+S+ K+ L    E   + T  R G  H L  L     L   +LIG   AI+L DRFL 
Sbjct: 236 QQQSRSKMMLIIADEMDYLITRDR-GVLHELFMLTT-LPLSRCILIGVANAIDLADRFLP 293

Query: 100 KMKVRPCHVPCIT 112
           K+K   C    +T
Sbjct: 294 KLKSLNCKPLVVT 306


>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
          region is similar to C-term region of kinesin motor
          protein GB:AAB51397 (Mus musculus); contains Pfam
          profile: PF00225 Kinesin motor domain
          Length = 1065

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 10 DAAECRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDG 68
          D +   S   S SR+ +D +++ + +L E+L    ++ P L+LP E+   E+    RDG
Sbjct: 19 DVSSMLSFDGSESRESMDDSKKGHQSLVEWL---NETLPYLKLPWEASEDELRACLRDG 74


>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
          region is similar to C-term region of kinesin motor
          protein GB:AAB51397 (Mus musculus); contains Pfam
          profile: PF00225 Kinesin motor domain
          Length = 1064

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 10 DAAECRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDG 68
          D +   S   S SR+ +D +++ + +L E+L    ++ P L+LP E+   E+    RDG
Sbjct: 19 DVSSMLSFDGSESRESMDDSKKGHQSLVEWL---NETLPYLKLPWEASEDELRACLRDG 74


>At1g50710.1 68414.m05702 expressed protein
          Length = 423

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 28  SAQQLYATLNEYLLLEQKSQPKLRLPAESESGEV 61
           ++ Q+Y TL   L++ + +Q KLRLP  S+ GE+
Sbjct: 100 NSPQVYETLEHRLVVAEAAQ-KLRLPLISDGGEI 132


>At5g43080.1 68418.m05259 cyclin, putative similar to A-type cyclins
           from [Nicotiana tabacum] GI:1064931, [Catharanthus
           roseus] GI:2190259; contains Pfam profiles PF00134:
           Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
           domain
          Length = 355

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 21  TSRDDVDSAQQLYATLNEYLL-LEQKSQPKLRLPAESESGEVTTGARDGAAHVLRCLKVW 79
           T  DD         ++ EYL  LE KS+P +    E    +VT+  R      L  +   
Sbjct: 76  TRSDDPQMCGPYVTSIFEYLRQLEVKSRPLVDY-IEKIQKDVTSNMRGVLVDWLVEVAEE 134

Query: 80  FDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119
           + L +D L  A++  DRFL+   V    +  + V+ M I+
Sbjct: 135 YKLLSDTLYLAVSYIDRFLSLKTVNKQRLQLLGVTSMLIA 174


>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin
           3a [Arabidopsis thaliana] GI:509425; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA
           for cyclin 3b protein GI:728520
          Length = 436

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 80  FDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119
           + L  D L   +NL DRFL+   +    +  + VSCM I+
Sbjct: 220 YKLVPDTLYLTVNLIDRFLSNSYIERQRLQLLGVSCMLIA 259


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/32 (28%), Positives = 22/32 (68%)

Query: 141 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 172
           IS ++CT   ++  ++V+ ++ G+ +GT++ T
Sbjct: 230 ISNASCTTNCLAPFAKVLDEEFGIVKGTMTTT 261


>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
           A, chloroplast (GAPA) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit A
           identical to SP|P25856 Glyceraldehyde 3-phosphate
           dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit A) {Arabidopsis thaliana}
          Length = 396

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 79  WFDLPADVLIGAINLF-DRFLTKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEE 137
           W +L  D++I    +F DR      +       I  +     I  Y    N     S +E
Sbjct: 147 WKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNAD-AYSHDE 205

Query: 138 LVSISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 172
            + IS ++CT   ++   +V+  K G+ +GT++ T
Sbjct: 206 PI-ISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 239


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,647,943
Number of Sequences: 28952
Number of extensions: 222969
Number of successful extensions: 510
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 13
length of query: 361
length of database: 12,070,560
effective HSP length: 82
effective length of query: 279
effective length of database: 9,696,496
effective search space: 2705322384
effective search space used: 2705322384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)

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