BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001790-TA|BGIBMGA001790-PA|IPR011028|Cyclin-like, IPR006671|Cyclin, N-terminal (361 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 33 0.30 At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2... 32 0.52 At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li... 31 1.2 At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin [... 30 2.8 At2g29680.2 68415.m03608 cell division control protein CDC6, put... 29 3.6 At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 29 4.8 At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 29 4.8 At1g50710.1 68414.m05702 expressed protein 29 4.8 At5g43080.1 68418.m05259 cyclin, putative similar to A-type cycl... 29 6.4 At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc... 29 6.4 At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 29 6.4 At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas... 28 8.4 >At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin 2b protein [Arabidopsis thaliana] GI:509423; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain; identical to cDNA cyc2a mRNA for cyclin 2a protein GI:728518 Length = 429 Score = 33.1 bits (72), Expect = 0.30 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 80 FDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEELV 139 FDL + L +NL DRFL+K V + + + + + A + +E+LV Sbjct: 218 FDLINETLFLTVNLIDRFLSKQNVMRKKLQLVGLVALLL-----ACKYEEVSVPVVEDLV 272 Query: 140 SISQSACTAGDVSRMSRVIQDKL 162 IS A T DV M + + L Sbjct: 273 LISDKAYTRNDVLEMEKTMLSTL 295 >At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2b protein [Arabidopsis thaliana] GI:509423 Length = 429 Score = 32.3 bits (70), Expect = 0.52 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Query: 80 FDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEELV 139 F+L + L +NL DRFL+K V + + + + ++ I +E+LV Sbjct: 219 FELMNETLFLTVNLIDRFLSKQAVARKKLQLVGLVALLLACKYEEVSVPI-----VEDLV 273 Query: 140 SISQSACTAGDVSRMSRVIQDKL 162 IS A T DV M +++ L Sbjct: 274 VISDKAYTRTDVLEMEKIMLSTL 296 >At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like protein [Nicotiana tabacum] GI:1064931, A-type cyclin [Catharanthus roseus] GI:2190259; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain Length = 327 Score = 31.1 bits (67), Expect = 1.2 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 9/138 (6%) Query: 24 DDVDSAQQLYATLNEYLLLEQKSQPKLRLP---AESESGEVTTGARDGAAHVLRCLKVWF 80 DD + + EYL E + +PKLR E ++T R L + F Sbjct: 48 DDPQMCGLYVSDIYEYLR-ELEVKPKLRPLHDYIEKIQEDITPSKRGVLVDWLVEVAEEF 106 Query: 81 DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEELVS 140 +L ++ L ++ DRFL+ V + + VS M I A++ KR +E+ Sbjct: 107 ELVSETLYLTVSYIDRFLSLKMVNEHWLQLVGVSAMFI-----ASKYEEKRRPKVEDFCY 161 Query: 141 ISQSACTAGDVSRMSRVI 158 I+ + T DV +M I Sbjct: 162 ITANTYTKQDVLKMEEDI 179 >At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin [Arabidopsis thaliana] GI:1360646 Length = 445 Score = 29.9 bits (64), Expect = 2.8 Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 8/124 (6%) Query: 39 YLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVLRCLKVWFDLPADVLIGAINLFDRFL 98 Y +E++SQPK+ + ++E E R L + + F+L + L +N+ DRFL Sbjct: 190 YKEVEKESQPKMYMHIQTEMNEKM---RAILIDWLLEVHIKFELNLETLYLTVNIIDRFL 246 Query: 99 TKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEELVSISQSACTAGDVSRMSRVI 158 + V + + +S + I A++ + +LV ++ +A ++ + M + I Sbjct: 247 SVKAVPKRELQLVGISALLI-----ASKYEEIWPPQVNDLVYVTDNAYSSRQILVMEKAI 301 Query: 159 QDKL 162 L Sbjct: 302 LGNL 305 >At2g29680.2 68415.m03608 cell division control protein CDC6, putative almost identical to DNA replication protein CDC6 GI:18056480 from [Arabidopsis thaliana]; identical to cDNA CDC6 protein (2g29680 gene) GI:18056479 Length = 508 Score = 29.5 bits (63), Expect = 3.6 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Query: 43 EQKSQPKLRLPAESESGEVTTGARDGAAHVLRCLKVWFDLPADVLIG---AINLFDRFLT 99 +Q+S+ K+ L E + T R G H L L L +LIG AI+L DRFL Sbjct: 236 QQQSRSKMMLIIADEMDYLITRDR-GVLHELFMLTT-LPLSRCILIGVANAIDLADRFLP 293 Query: 100 KMKVRPCHVPCIT 112 K+K C +T Sbjct: 294 KLKSLNCKPLVVT 306 >At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal region is similar to C-term region of kinesin motor protein GB:AAB51397 (Mus musculus); contains Pfam profile: PF00225 Kinesin motor domain Length = 1065 Score = 29.1 bits (62), Expect = 4.8 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query: 10 DAAECRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDG 68 D + S S SR+ +D +++ + +L E+L ++ P L+LP E+ E+ RDG Sbjct: 19 DVSSMLSFDGSESRESMDDSKKGHQSLVEWL---NETLPYLKLPWEASEDELRACLRDG 74 >At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal region is similar to C-term region of kinesin motor protein GB:AAB51397 (Mus musculus); contains Pfam profile: PF00225 Kinesin motor domain Length = 1064 Score = 29.1 bits (62), Expect = 4.8 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query: 10 DAAECRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDG 68 D + S S SR+ +D +++ + +L E+L ++ P L+LP E+ E+ RDG Sbjct: 19 DVSSMLSFDGSESRESMDDSKKGHQSLVEWL---NETLPYLKLPWEASEDELRACLRDG 74 >At1g50710.1 68414.m05702 expressed protein Length = 423 Score = 29.1 bits (62), Expect = 4.8 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Query: 28 SAQQLYATLNEYLLLEQKSQPKLRLPAESESGEV 61 ++ Q+Y TL L++ + +Q KLRLP S+ GE+ Sbjct: 100 NSPQVYETLEHRLVVAEAAQ-KLRLPLISDGGEI 132 >At5g43080.1 68418.m05259 cyclin, putative similar to A-type cyclins from [Nicotiana tabacum] GI:1064931, [Catharanthus roseus] GI:2190259; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain Length = 355 Score = 28.7 bits (61), Expect = 6.4 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Query: 21 TSRDDVDSAQQLYATLNEYLL-LEQKSQPKLRLPAESESGEVTTGARDGAAHVLRCLKVW 79 T DD ++ EYL LE KS+P + E +VT+ R L + Sbjct: 76 TRSDDPQMCGPYVTSIFEYLRQLEVKSRPLVDY-IEKIQKDVTSNMRGVLVDWLVEVAEE 134 Query: 80 FDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119 + L +D L A++ DRFL+ V + + V+ M I+ Sbjct: 135 YKLLSDTLYLAVSYIDRFLSLKTVNKQRLQLLGVTSMLIA 174 >At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin 3a [Arabidopsis thaliana] GI:509425; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA for cyclin 3b protein GI:728520 Length = 436 Score = 28.7 bits (61), Expect = 6.4 Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 80 FDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 119 + L D L +NL DRFL+ + + + VSCM I+ Sbjct: 220 YKLVPDTLYLTVNLIDRFLSNSYIERQRLQLLGVSCMLIA 259 >At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B identical to SP|P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana} Length = 447 Score = 28.7 bits (61), Expect = 6.4 Identities = 9/32 (28%), Positives = 22/32 (68%) Query: 141 ISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 172 IS ++CT ++ ++V+ ++ G+ +GT++ T Sbjct: 230 ISNASCTTNCLAPFAKVLDEEFGIVKGTMTTT 261 >At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase A, chloroplast (GAPA) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit A identical to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana} Length = 396 Score = 28.3 bits (60), Expect = 8.4 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 79 WFDLPADVLIGAINLF-DRFLTKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEE 137 W +L D++I +F DR + I + I Y N S +E Sbjct: 147 WKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNAD-AYSHDE 205 Query: 138 LVSISQSACTAGDVSRMSRVIQDKLGLARGTVSVT 172 + IS ++CT ++ +V+ K G+ +GT++ T Sbjct: 206 PI-ISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 239 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.320 0.131 0.387 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,647,943 Number of Sequences: 28952 Number of extensions: 222969 Number of successful extensions: 510 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 507 Number of HSP's gapped (non-prelim): 13 length of query: 361 length of database: 12,070,560 effective HSP length: 82 effective length of query: 279 effective length of database: 9,696,496 effective search space: 2705322384 effective search space used: 2705322384 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 60 (28.3 bits)
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