Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001789-TA|BGIBMGA001789-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR001841|Zinc finger, RING-type, IPR001965|Zinc
finger, PHD-type
(760 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 59 1e-08
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 59 1e-08
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 40 0.006
At5g38720.1 68418.m04683 expressed protein predicted protein, Dr... 37 0.043
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 37 0.043
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 37 0.057
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 37 0.057
At4g33380.1 68417.m04745 expressed protein 36 0.076
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 35 0.23
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-... 33 0.53
At1g14510.1 68414.m01720 PHD finger family protein contains Pfam... 33 0.53
At5g20510.1 68418.m02437 PHD finger family protein contains Pfam... 32 1.2
At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam prof... 32 1.2
At5g60030.1 68418.m07527 expressed protein 32 1.6
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 31 2.1
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 31 2.1
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 31 2.1
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 31 2.1
At1g66840.1 68414.m07597 expressed protein contains Pfam profile... 31 2.1
At2g33793.1 68415.m04145 expressed protein 31 2.8
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 31 2.8
At3g22790.1 68416.m02873 kinase interacting family protein simil... 31 3.8
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 30 5.0
At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE... 29 8.7
At5g23590.1 68418.m02768 DNAJ heat shock N-terminal domain-conta... 29 8.7
At5g05610.2 68418.m00611 PHD finger family protein contains Pfam... 29 8.7
At5g05610.1 68418.m00610 PHD finger family protein contains Pfam... 29 8.7
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa... 29 8.7
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 29 8.7
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 58.8 bits (136), Expect = 1e-08
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 70 GFLYRDILAEIERAKKHKCSYCSRGGATLGCSVSQCRKQFHLPCGREKNAVSLFYGNYKS 129
G +++ AE+ R K KC+ CS GA LGC V CR+ +H+PC RE + Y ++
Sbjct: 385 GDTVKNLKAELARGMKIKCTKCSLKGAALGCFVKSCRRSYHVPCAREISRCRWDYEDFLL 444
Query: 130 YCQQH 134
C H
Sbjct: 445 LCPAH 449
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 58.8 bits (136), Expect = 1e-08
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 70 GFLYRDILAEIERAKKHKCSYCSRGGATLGCSVSQCRKQFHLPCGREKNAVSLFYGNYKS 129
G +++ AE+ R K KC+ CS GA LGC V CR+ +H+PC RE + Y ++
Sbjct: 386 GDTVKNLKAELARGMKIKCTKCSLKGAALGCFVKSCRRSYHVPCAREISRCRWDYEDFLL 445
Query: 130 YCQQH 134
C H
Sbjct: 446 LCPAH 450
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 39.9 bits (89), Expect = 0.006
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 79 EIERAKKHKCSYCSRGGATLGCSVSQCRKQFHLPCGR 115
E+ R+++ CS C GA LGC C+ FH+ C +
Sbjct: 960 ELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAK 996
>At5g38720.1 68418.m04683 expressed protein predicted protein,
Drosophila melanogaster
Length = 306
Score = 37.1 bits (82), Expect = 0.043
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 425 QEKINSEEIDNVIIDEKILEEVREKFRKPKPLCVKRKIVDEILQGLFDTVLKESKQKEII 484
+EK+ + +I I++ E+V+EK K KRK +EI + + + +ESK K+
Sbjct: 80 KEKVGNVDISEPILEAISTEKVKEKKGKMNKTKKKRK-AEEITRSSVEDLKRESKFKKSN 138
Query: 485 KK----WCSPKKREIKEETEPQDIISEDTAVAR 513
KK S K+ +I+EE + I S D R
Sbjct: 139 KKKKMDMTSKKENKIEEEEDVYQISSGDEDCTR 171
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 37.1 bits (82), Expect = 0.043
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 191 GVQTFWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDK 231
G FW C A + WFH +C++ A + + KCP C++K
Sbjct: 211 GTDEFWICCDACEKWFHGKCVKITPAKAEHIKHYKCPTCSNK 252
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 36.7 bits (81), Expect = 0.057
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 84 KKHKCSYCSR-GGATLGCSVSQCRKQFHLPCGREKNAVSLFYGN--YKSYCQQHVPKQK 139
K C C R GA CS C+ FH C R G +K+YC++H +QK
Sbjct: 1117 KTDNCCVCQRIYGACTKCSYGNCQTTFHPSCARSAGFHMTGGGKHPHKAYCEKHSMEQK 1175
Score = 31.1 bits (67), Expect = 2.8
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 81 ERAKKHKCSYCS-RGGATLGCSVSQCRKQFHLPCGRE 116
E +K C+ C + GA + C CR FH C RE
Sbjct: 394 ETRRKLLCNLCKVKSGACIRCCNGTCRTSFHPICARE 430
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 36.7 bits (81), Expect = 0.057
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 384 TRQDLNLKPPRKPQYCLIKPTVLKNIEQNLLSPIKLLEKGVQ--EKINSEEIDNVIIDEK 441
TR L+ PP K L+K T L+ + +K ++ ++ +K ++ ID++ EK
Sbjct: 34 TRLSLDRSPPTKVHSRLVKGTELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEK 93
Query: 442 ILEEVREKFRKPKPLCVKRKIVDEILQGLFDTVLKESKQKEIIKKWCSPKKREIK 496
++EE EK + + L +++ + F V E E ++K K E++
Sbjct: 94 LVEEANEKLK--EALAAQKRAEESFEVEKFRAVELEQAGLEAVQKKDVTSKNELE 146
>At4g33380.1 68417.m04745 expressed protein
Length = 328
Score = 36.3 bits (80), Expect = 0.076
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 408 NIEQNLLSPIKLLEKGVQEKINSEEIDNVIIDEKILEEVR--EKFRKPKPLCVKRKIVDE 465
N+ + I+ +E+ ++ + + E + + +K+ EV E + P VK K+VDE
Sbjct: 55 NVVKYTADEIRKMEESIRIRRSKEPTLILQLVKKLKHEVSTAESSTELSPN-VKHKLVDE 113
Query: 466 ILQGL--FDTVLKESKQKEIIKKWCSPKKREIKEETEPQDIISEDTAVARNPSTPVKVXX 523
ILQ L F+ ++ +E+++ W + K E KE + Q+ ++ T + V+
Sbjct: 114 ILQRLKSFEDKSNVTQLREVVETWRNEKLEEAKELIQGQNGVN-STLIVEEAGMLVRALE 172
Query: 524 XXXXXXXXXXTFQLPPEFVADDSD 547
F LP E + D
Sbjct: 173 LEWDVLSEEIGFWLPAEVTNVEHD 196
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 34.7 bits (76), Expect = 0.23
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 660 ARIDKKKKRDHK-ELNKSKVYRK-NERQKMKIRFKTRIKLKVCESKDKDLKQYVLSNVNN 717
A+ D++ K+D K ++ + KV + E+Q+ R+K K E +++ K+ +
Sbjct: 199 AKEDRQGKKDVKIKVAEKKVPKHVREKQETLARWKEAEDGKKKEEEERLRKEEEERRIEE 258
Query: 718 VVVRPQKEVGPIKRKYNKQEKSSDNLVQTSIQKFFAVKN 756
R +E+ KRK K EK + L+ T+ QK A KN
Sbjct: 259 EREREAEEIRQ-KRKIRKMEKKQEGLILTAKQKRDAAKN 296
>At3g42790.1 68416.m04474 PHD finger family protein contains
PHD-finger domain, INTERPRO:IPR001965
Length = 250
Score = 33.5 bits (73), Expect = 0.53
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 191 GVQTFWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDK 231
G FW C + WFH +C++ A + KCP C++K
Sbjct: 205 GADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNK 246
>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 252
Score = 33.5 bits (73), Expect = 0.53
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 191 GVQTFWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDKER 233
G FW C A + WFH +C++ A + + KCP C ++
Sbjct: 206 GGDEFWICCDACEKWFHGKCVKITPAKAEHIKHYKCPSCTTSKK 249
>At5g20510.1 68418.m02437 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 260
Score = 32.3 bits (70), Expect = 1.2
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 195 FWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDK 231
FW C + WFH C++ A + + KCP C++K
Sbjct: 219 FWICCDMCEKWFHGECVKITPARAEHIKHYKCPTCSNK 256
>At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam profile
PF04784: Protein of unknown function, DUF547, weak hit
to PF00462: Glutaredoxin
Length = 587
Score = 32.3 bits (70), Expect = 1.2
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 476 KESKQKEIIKKWCSPKKREIKEETEPQDIISEDTAVARN 514
+E K EII K SPK++ ++EE + +II+++ + N
Sbjct: 12 EERKSAEIIAKEVSPKQQNVEEERKSAEIIAKEVSPKHN 50
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 31.9 bits (69), Expect = 1.6
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 663 DKKKKRDHKELNKSKVYRKNERQKMKIRFKTRIKLKVCESKD--KDLKQYVLSNVNNVVV 720
D++K D KE K K + N+ + + K + K E K+ K+ + V+ +
Sbjct: 175 DEQKSADRKERKKKKSKKNNDEDVVDEKEKLEDEQKSAEIKEKKKNKDEDVVDEKEKEKL 234
Query: 721 RPQKEVGPIKRKYNKQEKSSDNLV 744
++ G K++ K+ KS + +V
Sbjct: 235 EDEQRSGERKKEKKKKRKSDEEIV 258
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 31.5 bits (68), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 195 FWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDK 231
FW C + WFH +C++ A + KCP C++K
Sbjct: 214 FWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 251
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 31.5 bits (68), Expect = 2.1
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 663 DKKKKRDHKELNKSKVYRKNERQKMKIRFKTRIKLKVCESKDKDLKQY--VLSNVNNVVV 720
D + K D + L K + ++E M+ R + +K VC K K+ +L N +V
Sbjct: 226 DHQVKEDLEALIKMREALRDEVMVMEERLE--VKEVVCSELQKKSKRLEDLLINEKKLVS 283
Query: 721 RPQKEVGPIKRKYNKQEKSSDNL 743
+ +KE+ + + Y++ + +DNL
Sbjct: 284 QRRKELAKLHKSYSRVRECTDNL 306
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 31.5 bits (68), Expect = 2.1
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 85 KHKCSYCS-RGGATLGCSVSQCRKQFHLPCGREKN 118
K +C C R G + CS +C+ FH+ CG +++
Sbjct: 264 KDRCYLCKVRRGCVIECSEMRCKLAFHVTCGLKED 298
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 31.5 bits (68), Expect = 2.1
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 85 KHKCSYCS-RGGATLGCSVSQCRKQFHLPCGREKN 118
K +C C R G + CS +C+ FH+ CG +++
Sbjct: 264 KDRCYLCKVRRGCVIECSEMRCKLAFHVTCGLKED 298
>At1g66840.1 68414.m07597 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 607
Score = 31.5 bits (68), Expect = 2.1
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 399 CLIKPTVLKNIEQNL--LSPIKLLEKGVQEKINSEEIDNVIIDEKILEEVREKFRKPKPL 456
C + T K +E + + +K K + I +E + V + +LEE RE FR + L
Sbjct: 464 CHAEETAEKKVEAAMAWVEALKASTKAIM--IKTESLKRVS-GKTMLEEERESFRMQRSL 520
Query: 457 CVKRKIVDEI 466
+KR + DEI
Sbjct: 521 SIKRLVQDEI 530
>At2g33793.1 68415.m04145 expressed protein
Length = 212
Score = 31.1 bits (67), Expect = 2.8
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 429 NSEEIDNVIIDEKI-LEEVREKFRKPKPLCVKRKIVDEILQGLFDTVLKESKQKE-IIKK 486
+S+E +N++ DE EE+ +KF K K + LQGL DT+ K + KE + +
Sbjct: 98 SSKECENILKDEAAKFEELHKKFVKDKA---------DHLQGLKDTISKFEEDKERLYMR 148
Query: 487 WCSPKKREIKEETEPQDIISEDTA 510
+ +K+E TE + +E A
Sbjct: 149 YEQLRKKEKTMITEQEKFCTEKLA 172
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 31.1 bits (67), Expect = 2.8
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 664 KKKKRDHKELNKSKVYRKNERQKMKIRFKTRIKLKVCESK-DKDLKQYVLSNVNNVVVRP 722
KK +RD N+ K + +E+++ K R K R+K E D+D + R
Sbjct: 23 KKSRRDRDRSNERKKDKGSEKRREKDRRKKRVKSSDSEDDYDRDDDEEREKRKEKERERR 82
Query: 723 QKEVGPIKRKYNKQEKSSDN 742
+++ +KR+ +++ KSSD+
Sbjct: 83 RRDKDRVKRR-SERRKSSDS 101
>At3g22790.1 68416.m02873 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 30.7 bits (66), Expect = 3.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 405 VLKNIEQNLLSPIKLLEKGVQEKINSEEIDNVIIDEK 441
+L N+++NL S +KLL K +QE EE + + EK
Sbjct: 1227 ILSNLKENLESEVKLLHKEIQEHRVREEFLSSELQEK 1263
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 30.3 bits (65), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 74 RDILAEIERAKKHKCSYCSRGGATLGC 100
++I A + R + KC+ C R GAT GC
Sbjct: 580 KNIRAALFRGRSLKCTRCDRPGATTGC 606
>At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE) /
sigma-like factor (SIG5) identical to RNA polymerase
sigma subunit SigE [Arabidopsis thaliana] GI:4972299,
sigma-like factor [Arabidopsis thaliana] GI:4033838;
contains Pfam profiles PF04545: Sigma-70, region 4,
PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
Length = 517
Score = 29.5 bits (63), Expect = 8.7
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 660 ARIDKKKKRDHKELNKSKVYRKNERQKMKIRFKTRIKLKVCESKDKDLKQYVLSNVNNVV 719
A++ +++KR K V R N +++ ++ RI LK ++K V+++V+ V
Sbjct: 129 AKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALK-RNVQEKP----VVASVDKKV 183
Query: 720 VRPQKEVGPIKRKYNKQEKSSD 741
+ Q+E I+R S+D
Sbjct: 184 TKRQQEEEKIERLVRDYSASND 205
>At5g23590.1 68418.m02768 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|P39101
CAJ1 protein Saccharomyces cerevisiae; contains Pfam
profile PF00226 DnaJ domain
Length = 296
Score = 29.5 bits (63), Expect = 8.7
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 417 IKLLEKGVQEKINSEEIDNVIIDEKILEEVREKFRKPKPLCVKRKIVDEILQGLFDTVLK 476
+KL EK + + + +D + EKF++ K K DE + LFD +L+
Sbjct: 20 LKLTEKEIAKAYKLKALDLHPDKRPDDPDAHEKFQRLKTSYEVLK--DEKARKLFDDLLR 77
Query: 477 ESKQKEIIKKWCSPKKREIKEETEPQDIISEDTAVARNPS 516
++K+ K K+R++ + E + E +A + NPS
Sbjct: 78 IQREKQHKKSQVDSKRRKMMSDLEER----ERSAFSPNPS 113
>At5g05610.2 68418.m00611 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 29.5 bits (63), Expect = 8.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 195 FWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDKE 232
FW C + W+H +C++ A + KCP C K+
Sbjct: 200 FWICCDVCERWYHGKCVKITPAKAESIKQYKCPSCCTKK 238
>At5g05610.1 68418.m00610 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 29.5 bits (63), Expect = 8.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 195 FWPPCCARDAWFHRRCLQ-RMALTAGMHYLKCPLCNDKE 232
FW C + W+H +C++ A + KCP C K+
Sbjct: 200 FWICCDVCERWYHGKCVKITPAKAESIKQYKCPSCCTKK 238
>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 506
Score = 29.5 bits (63), Expect = 8.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 178 VCLICYEEVEP-YPGVQTFWPPCCARDAWFHRRCLQR-MALTAGMHYLKCPLCNDK 231
+C ICYE+++P +Q+ C FH CLQ+ + CP+C K
Sbjct: 11 ICSICYEDLKPVVENLQSI--SACGH--VFHELCLQQWFEYCPSTNKRNCPICKQK 62
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 29.5 bits (63), Expect = 8.7
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 179 CLICYEEVEPYPGVQTFWPPCCARDAWFHRRCLQRMALTAGMHYLKCPLCNDKERFHEAV 238
C+IC + E V+ P C FH C+ + Y+ CPLC + F +
Sbjct: 140 CVICLSDFEEGETVKVI--PHCGHV--FHVDCVDTWLSS----YVTCPLCRSNQLFSDKD 191
Query: 239 ISQGYYIPDQDAAWE 253
+ PDQD+A E
Sbjct: 192 LGM-QEPPDQDSAEE 205
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,473,907
Number of Sequences: 28952
Number of extensions: 738869
Number of successful extensions: 2182
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2160
Number of HSP's gapped (non-prelim): 40
length of query: 760
length of database: 12,070,560
effective HSP length: 87
effective length of query: 673
effective length of database: 9,551,736
effective search space: 6428318328
effective search space used: 6428318328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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