GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001788-TA|BGIBMGA001788-PA|undefined
         (278 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    33   0.21 
At5g05310.3 68418.m00572 expressed protein                             29   3.4  
At5g05310.2 68418.m00571 expressed protein                             29   3.4  
At5g05310.1 68418.m00570 expressed protein                             29   3.4  
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    29   3.4  
At4g01810.1 68417.m00238 protein transport protein-related relat...    28   8.0  

>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 81  VNMSEQHTAGPITELIETLPEVIENNLKKGKHRFTRPEVQTNLIG 125
           +N+   H  GPI + I+ L  + E NLK+ K     PE   N+ G
Sbjct: 316 LNLESNHLKGPIPDAIDRLHNLTELNLKRNKINGPIPETIGNISG 360


>At5g05310.3 68418.m00572 expressed protein 
          Length = 511

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 135 VSDTKEGSTLYVATPPGESVALFSTLSMSAQIKA--CVDALGYR 176
           VS+T    T YV T PG  + LF+ +S   + KA  C+D +  R
Sbjct: 396 VSETLRKVTTYVVTRPGREL-LFTVVSQDEKYKAKVCIDVIVQR 438


>At5g05310.2 68418.m00571 expressed protein 
          Length = 496

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 135 VSDTKEGSTLYVATPPGESVALFSTLSMSAQIKA--CVDALGYR 176
           VS+T    T YV T PG  + LF+ +S   + KA  C+D +  R
Sbjct: 396 VSETLRKVTTYVVTRPGREL-LFTVVSQDEKYKAKVCIDVIVQR 438


>At5g05310.1 68418.m00570 expressed protein 
          Length = 469

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 135 VSDTKEGSTLYVATPPGESVALFSTLSMSAQIKA--CVDALGYR 176
           VS+T    T YV T PG  + LF+ +S   + KA  C+D +  R
Sbjct: 396 VSETLRKVTTYVVTRPGREL-LFTVVSQDEKYKAKVCIDVIVQR 438


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 139 KEGSTLYVATPPGESVALFSTLSMSAQIKACVDALGYRKYEDAKLH 184
           K GS   +  PP +++AL   L   A+ +A +  + Y++Y+DA L+
Sbjct: 477 KFGSLDKIILPPTKTMALAVFLE-PAEARAALKGMAYKRYKDAPLY 521


>At4g01810.1 68417.m00238 protein transport protein-related related
           to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
          Length = 880

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 71  VASQNRMWHVVNMSEQHTAGPITELI-ETLPEVIENNLKKGKHRFTRPEVQTNLIGDLLY 129
           V + N+    V  S+  T+ P+  +I E L E    +L+   H F     QT  +G +LY
Sbjct: 261 VQTGNKRPGFVPASDSRTSAPVVLVIDECLDEPHLQHLQSSLHAFVDSLPQTTRLGIILY 320

Query: 130 ISVQLVSDTKEGS 142
                + D  E S
Sbjct: 321 GRTVSIYDFSEDS 333


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,747,753
Number of Sequences: 28952
Number of extensions: 212061
Number of successful extensions: 466
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 6
length of query: 278
length of database: 12,070,560
effective HSP length: 80
effective length of query: 198
effective length of database: 9,754,400
effective search space: 1931371200
effective search space used: 1931371200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)