Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001787-TA|BGIBMGA001787-PA|IPR007087|Zinc finger,
C2H2-type
(518 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ... 36 0.049
At5g26990.1 68418.m03220 drought-responsive family protein non-c... 34 0.26
At4g26030.1 68417.m03748 hypothetical protein 33 0.35
At3g06760.1 68416.m00801 drought-responsive family protein simil... 32 1.1
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ... 31 1.4
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ... 31 1.8
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 31 1.8
At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein ... 31 2.4
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family... 31 2.4
At3g42440.1 68416.m04395 hypothetical protein several hypothetic... 30 4.3
At1g56280.2 68414.m06470 drought-responsive family protein conta... 30 4.3
At1g56280.1 68414.m06469 drought-responsive family protein conta... 30 4.3
At5g60030.1 68418.m07527 expressed protein 29 5.6
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit... 29 5.6
At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein ... 29 5.6
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 29 5.6
At3g15420.1 68416.m01956 expressed protein 29 5.6
At3g05700.1 68416.m00637 drought-responsive family protein conta... 29 5.6
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa... 29 5.6
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa... 29 5.6
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 29 5.6
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ... 29 5.6
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea... 29 7.5
At3g24730.1 68416.m03105 mitosis DIM1 family protein contains Pf... 29 7.5
At5g61550.1 68418.m07724 protein kinase family protein contains ... 29 9.9
At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i... 29 9.9
At3g23140.1 68416.m02916 zinc finger (C2H2 type) family protein ... 29 9.9
At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP tra... 29 9.9
At1g06760.1 68414.m00718 histone H1, putative similar to histone... 29 9.9
>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 650
Score = 36.3 bits (80), Expect = 0.049
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 5/164 (3%)
Query: 17 KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVI-AKRKLIPHKKVIKVAHKMNKT 75
KC C F+ QAL HQ + P+K++++ + +EV K KL + ++
Sbjct: 44 KCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVC 103
Query: 76 SENASTKKSQPHNLLRKYNTKTPIPSEDGKQSEFECPVCSKIF-KVYSWAWKHIQKY-HC 133
+ + + +TK + S + S + KI + S+ +K+ HC
Sbjct: 104 GKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHC 163
Query: 134 IDEKGNPVLPTSKDIIKPVRIERCIACNVLIKSDDH--TCGISF 175
++ K + P S P + + KS H CG SF
Sbjct: 164 VELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSF 207
>At5g26990.1 68418.m03220 drought-responsive family protein
non-consensus AT donor splice site at exon 3, AC
acceptor splice site at exon 4; similar to
drought-induced mRNA, Di19 [Arabidopsis thaliana]
gi|469110|emb|CAA55321
Length = 222
Score = 33.9 bits (74), Expect = 0.26
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 99 IPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGN--PV--LPTSKDIIKPVRI 154
I ED + E+ CP CS F + S HI + H +D K P+ + S D+I + +
Sbjct: 34 IEGEDDFREEYACPFCSDYFDIVSLCC-HIDEDHPMDAKNGVCPICAVKVSSDMIAHITL 92
Query: 155 ERCIACNVLIKSDDHTCGI-SFSNVLKSQY 183
+ V K G S ++LK ++
Sbjct: 93 QHANMFKVTRKRKSRRGGAQSMLSILKREF 122
>At4g26030.1 68417.m03748 hypothetical protein
Length = 220
Score = 33.5 bits (73), Expect = 0.35
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 19/168 (11%)
Query: 51 TEVIAKR--KLIPHKKVIKVAH---KMNK--TSENASTKKS--QPHNLLRKYNTKTPIPS 101
T+ IAKR LIP ++ V + ++N+ TS K + P++ ++Y T TP P
Sbjct: 25 TQTIAKRYHALIPTSNMVIVQNDNDRVNRFMTSYPPILKSTVNPPNDFDKQYETFTPKPI 84
Query: 102 EDG-KQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGNPVLPTSKDIIKPVRIERCIAC 160
+ Q ++ C + ++S + KH + + + + G V K I KP + I
Sbjct: 85 DFFCSQQDY---ACRQHLDIFSSSPKHYHEQY-VHKNGRSV----KYICKPTEVLEEIHD 136
Query: 161 NVLIKSDDHTCGISFSNVLKSQYSCLGCNQQFNTLHLYELHIAGLHSE 208
+ + D S S + CL CN F+T + +H +HS+
Sbjct: 137 EIDYEKDGGWI-YSLPFEKDSSFICLKCNSLFDTSQMLVVHTELIHSK 183
>At3g06760.1 68416.m00801 drought-responsive family protein similar
to drought-induced mRNA, Di19 [Arabidopsis thaliana]
gi|469110|emb|CAA55321
Length = 217
Score = 31.9 bits (69), Expect = 1.1
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 75 TSENASTKKSQPHNLLRKYNTKTPIPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCI 134
+S ++S+++ Q + L + ED ++EF CP C++ F + HI + H +
Sbjct: 13 SSSSSSSRRCQSRSDLYLGGGYEDLEGEDDLKAEFICPFCAEDFDIVGLCC-HIDEEHPV 71
Query: 135 DEKGNPVLP 143
+ K N V P
Sbjct: 72 EAK-NGVCP 79
>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 314
Score = 31.5 bits (68), Expect = 1.4
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 17 KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVI 54
KC+TC FK+ QAL H+A +H KK A KTE +
Sbjct: 195 KCETCGKVFKSYQALGGHRA-SH--KKNKACMTKTEQV 229
>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 288
Score = 31.1 bits (67), Expect = 1.8
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 17 KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNK 74
KC+TC FK+ QAL H+A +H KK KTE +R + V+ VA ++++
Sbjct: 174 KCETCGKVFKSYQALGGHRA-SH--KKNRVSNNKTE---QRSETEYDNVVVVAKRIHE 225
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 31.1 bits (67), Expect = 1.8
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 339 KSLHVKENVLKLLYGKALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEM 398
K +H N+ K Y K + S N ++E + +E K+T+TD +VE K E
Sbjct: 1458 KKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLE-EAKEEAGKRTTTDAVVEQSVKEREEK 1516
Query: 399 KTKVPV 404
+ ++ +
Sbjct: 1517 EKRIQI 1522
>At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain;
low similarity to SP:Q96GR4 Zinc finger DHHC domain
containing protein 12 (Zinc finger protein 400) {Homo
sapiens}
Length = 288
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 137 KGN--PVLPTSKDIIKPVRIERCIACNVLIKSDDHTC 171
KGN + PT K II+PVR + C C ++ DH C
Sbjct: 110 KGNWSQLCPTCK-IIRPVRSKHCPTCKRCVEQFDHHC 145
>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
protein
Length = 558
Score = 30.7 bits (66), Expect = 2.4
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 337 LGKSLHVKENVLKLLYGKALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDT 396
L + L V E+++K L + L + + L + +E EL + + D+V E+K+ +
Sbjct: 121 LEEKLVVNESLIKDLQLQVLNLKTELEEARNSNVEL----ELNNRKLSQDLVSAEAKISS 176
Query: 397 EMKTKVPVKTYSNTR-KNV-KFEDNKIGSPKFGSPASLTS 434
P K + N+R K++ + +K+ PK ++ S
Sbjct: 177 LSSNDKPAKEHQNSRFKDIQRLIASKLEQPKVKKEVAVES 216
>At3g42440.1 68416.m04395 hypothetical protein several hypothetical
proteins - Arabidopsis thaliana
Length = 136
Score = 29.9 bits (64), Expect = 4.3
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 349 KLLYGKALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESK-LDTEMKTKV--PVK 405
KL+Y + E+ +L DE G ++E + A + + E E K L T + K+ P++
Sbjct: 29 KLVYPNSYEICCILVDETGDQMEATIDRRYA-AVYLESMQEKELKRLTTFIVRKIISPIR 87
Query: 406 TYSNTRKNVKFEDNKIGSPKFGSPASLTSFNDSYRHFVEDT 446
+ SN + F DN + +P L S+ + +ED+
Sbjct: 88 STSNL-YGIWFMDNTVVTPDETRETVLFKNLTSFDYILEDS 127
>At1g56280.2 68414.m06470 drought-responsive family protein contains
an AT-AC intron 3, potentially contains a frameshift. An
alternate model provides a translation more consistent
with homologous proteins but lacks the AT-AC intron;
similar to drought-induced mRNA, Di19 [Arabidopsis
thaliana] gi|469110|emb|CAA55321
Length = 112
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 99 IPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGNPVLP 143
I +D Q EF CP C++ + + HI H ++ K N V P
Sbjct: 25 IDGDDDFQEEFACPFCAESYDIIGLCC-HIDDEHTLESK-NAVCP 67
>At1g56280.1 68414.m06469 drought-responsive family protein contains
an AT-AC intron 3, potentially contains a frameshift. An
alternate model provides a translation more consistent
with homologous proteins but lacks the AT-AC intron;
similar to drought-induced mRNA, Di19 [Arabidopsis
thaliana] gi|469110|emb|CAA55321
Length = 200
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 99 IPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGNPVLP 143
I +D Q EF CP C++ + + HI H ++ K N V P
Sbjct: 25 IDGDDDFQEEFACPFCAESYDIIGLCC-HIDDEHTLESK-NAVCP 67
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 362 LNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYSNTRKNVKFEDNK 420
L DE + K+ +KK + +D+V+++ KL+ E K+ + N ++V E K
Sbjct: 173 LEDEQKSADRKERKKKKSKKNNDEDVVDEKEKLEDEQKSAEIKEKKKNKDEDVVDEKEK 231
>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to SP|Q9EPU4 Cleavage and
polyadenylation specificity factor, 160 kDa subunit
(CPSF 160 kDa subunit) {Mus musculus}; contains Pfam
profile PF03178: CPSF A subunit region
Length = 1442
Score = 29.5 bits (63), Expect = 5.6
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 233 DIKYTTLSKIDNMQIYHCS-HMKCDSSTA---SMCPSSFTKQEFS--KGIQVVYYKAHYG 286
D T +SK N ++ CS H K + S+ P T+ E KGI VY+K+ G
Sbjct: 529 DANATGVSKQSNYELVCCSGHGKNGALCVLRQSIRPEMITEVELPGCKGIWTVYHKSSRG 588
Query: 287 HIIDEYTL---PEEFKKYSISSL 306
H D + +E+ Y I SL
Sbjct: 589 HNADSSKMAADEDEYHAYLIISL 611
>At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 427
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 16 CKCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRK-LIPHKKVIKVAHKMNK 74
C + C L FK +A H H + KT++ KR+ + + V K+ H+ +K
Sbjct: 211 CLVEGCGLKFKTYKARHRHLIDKHKFPTTFEFFKKTQLSKKRREKLQRQHVSKLKHEEDK 270
Query: 75 TSENA 79
+ ++
Sbjct: 271 EAASS 275
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 29.5 bits (63), Expect = 5.6
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 17 KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNKTS 76
KCD C+ + ++H + K T + I H+ + N S
Sbjct: 140 KCDKCSKKYAVQSDWKAHSKICGT--KEYKCDCGTLFSRRDSFITHRAFCDALAEENARS 197
Query: 77 ENASTKKSQPHNLLRKYNTKTPIPS 101
++ +KK P L RK P+P+
Sbjct: 198 HHSQSKKQNPEILTRKNPVPNPVPA 222
>At3g15420.1 68416.m01956 expressed protein
Length = 107
Score = 29.5 bits (63), Expect = 5.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 45 IAYRPKTEVIAKRKLIPHKKVIKVAHKMNK 74
+A+ K EV A +PHKK+I+ K++K
Sbjct: 57 LAFSEKEEVSASENQMPHKKIIEPVAKLHK 86
>At3g05700.1 68416.m00637 drought-responsive family protein contains
similarity to drought-induced mRNA, Di19 [Arabidopsis
thaliana] gi|469110|emb|CAA55321
Length = 181
Score = 29.5 bits (63), Expect = 5.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 99 IPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGNPVLP 143
I E+ + EF CP CS F + S HI + H ++ K N V P
Sbjct: 34 IDGEEEFREEFACPFCSDYFDIVSLCC-HIDEDHPMEAK-NGVCP 76
>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 66 IKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDG-----KQSEFECPVCSKIFK 119
+ V+ + + TSE+ + QP + L ++ +TP + KQ++ EC VC F+
Sbjct: 53 VTVSSENSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQ 111
>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 66 IKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDG-----KQSEFECPVCSKIFK 119
+ V+ + + TSE+ + QP + L ++ +TP + KQ++ EC VC F+
Sbjct: 53 VTVSSENSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQ 111
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 29.5 bits (63), Expect = 5.6
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 197 LYELHIAGLHSEGAENLFFPDEAAFSAWRQDTEKRCDIKYTTLSKIDNMQIYHCSHMKCD 256
L +H++ + + G EN PDE++ S +DTE + + +LS + + ++ ++ D
Sbjct: 626 LRRVHMSCVVNSGNENGHVPDESSRSILSRDTETEDNDRELSLSLLRDYYSFNLQPLESD 685
Query: 257 SSTASMCPSSFTK 269
S + P S TK
Sbjct: 686 S---VVNPGSVTK 695
>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 267
Score = 29.5 bits (63), Expect = 5.6
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 17 KCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRKLIPHKKVIKVAH 70
+C+TC FK+ QAL H+A +H KK+IA +T+ + +L KK +H
Sbjct: 161 ECETCEKVFKSYQALGGHRA-SH--KKKIA---ETDQLGSDELKKKKKKSTSSH 208
>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
family protein similar to St12p protein (GI:166878)
{Arabidopsis thaliana}; contains Pfam profile: PF00400
WD domain, G-beta repeat
Length = 398
Score = 29.1 bits (62), Expect = 7.5
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 238 TLSKIDNMQIYHCS---HMKCDSSTASMCPSSFTKQEFSKGIQVVYYKAHYGHIIDEYTL 294
+++++ M+IYH S H+ ++ CPS S + +G ++ + T+
Sbjct: 279 SVAEVKTMEIYHYSKRLHLGQSIASLEFCPSERVMLTTS---------SEWGEMVTKLTV 329
Query: 295 PEEFKKYSISSLL 307
P+E+K++ I +LL
Sbjct: 330 PKEWKEWQIYALL 342
>At3g24730.1 68416.m03105 mitosis DIM1 family protein contains Pfam
domain PF02966: Mitosis protein DIM1
Length = 151
Score = 29.1 bits (62), Expect = 7.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 248 YHCSHMKCDSSTASMCP---SSFTKQEFSKGIQVVYYKAHYGHIIDEYTL-PEEFKKYSI 303
++ HMK DS TA + KQ+F ++ +Y A G +I + + PE KY +
Sbjct: 87 FNAHHMKLDSGTADHTKWVGAFHIKQDFIDVVEAIYRGAMKGKMIVQCPIPPERIPKYQL 146
>At5g61550.1 68418.m07724 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain;
protein kinase 1, PnPK1, Populus nigra, EMBL:AB041503
Length = 845
Score = 28.7 bits (61), Expect = 9.9
Identities = 21/96 (21%), Positives = 42/96 (43%)
Query: 354 KALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYSNTRKN 413
K E+ +E+ +E + +E+AK T++ + E + K K + + R+
Sbjct: 390 KLTELNQRRFEESEKLVELKEKEEVAKDTASKEKQRYEEAMKEAEKVKELMMKEALHRRE 449
Query: 414 VKFEDNKIGSPKFGSPASLTSFNDSYRHFVEDTLGA 449
+F+ + K ASL S Y+H+ + + A
Sbjct: 450 AEFKAERDAREKDKLQASLVSPGVQYQHYTWEEIAA 485
>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH4 (SUVH4) GI:13517748
Length = 624
Score = 28.7 bits (61), Expect = 9.9
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 387 IVEDESKLDTEMKTKVPVKTYSNTRKNVKFEDNKIGSPKFGSPASLTS 434
+V++ KL ++ K+++ V +T + K E+N GSPK SP LT+
Sbjct: 36 LVQERVKLLSDRKSEICV---DDTELHEKEEENVDGSPKRRSPPKLTA 80
>At3g23140.1 68416.m02916 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 172
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 13 RLTCKCDTCALGFKNVQALRSHQAVAHPLKKR 44
R T CD C GF N QAL H + ++R
Sbjct: 18 RRTYDCDICKRGFTNPQALGGHNNIHRRERER 49
>At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP
transferase 2 (IPT2) identical to tRNA
isopentenyltransferase (IPT2) [Arabidopsis thaliana]
GI:14279058; identical to cDNA tRNA isopentenyl
transferase GI:12383201;
Length = 466
Score = 28.7 bits (61), Expect = 9.9
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 115 SKIFKVYSWAWKHIQKYHCIDEKGNPVLPTSKDIIKPV-RIERCIACNVLIKSDDHTCGI 173
S++ V+ W +I I K + ++KP I RC D T G
Sbjct: 350 SRLETVFGWNIHYIDATEYILSKSEE--SWNAQVVKPASEIIRCFLETETESGRDPTSGK 407
Query: 174 SFSNVLKSQYSCLGC-NQQFNTLHLYELHIAG 204
S L +QY C C N+ H +E H G
Sbjct: 408 SIERDLWTQYVCEACGNKILRGRHEWEHHKQG 439
>At1g06760.1 68414.m00718 histone H1, putative similar to histone
H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana];
identical to cDNA H1-1C mRNA for histone H1-1 (partial)
GI:732560
Length = 274
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 37 VAHPLKKRIAYRPKTEVIAKRKLIPHKKVIK 67
V P KK +A K +A +K P KKV+K
Sbjct: 227 VTSPAKKAVAATKKVATVATKKKTPVKKVVK 257
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,906,045
Number of Sequences: 28952
Number of extensions: 503435
Number of successful extensions: 1580
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1560
Number of HSP's gapped (non-prelim): 42
length of query: 518
length of database: 12,070,560
effective HSP length: 84
effective length of query: 434
effective length of database: 9,638,592
effective search space: 4183148928
effective search space used: 4183148928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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