Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001782-TA|BGIBMGA001782-PA|undefined
         (87 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   0.47 
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   1.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    19   5.8  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 0.47
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 3   DDCVMDPDFSDDSGEEMGFNPIP 25
           DD + DP+  DD  ++M    +P
Sbjct: 230 DDNISDPEDDDDKDQDMDEGDLP 252


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
          protein 5 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 1.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 35 RGSKGDNETAFKDNTKVSRLSHLK 58
          R ++ D  T   DN  V R+ H K
Sbjct: 27 RSTRDDKYTTRYDNVDVDRILHSK 50


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 19.4 bits (38), Expect = 5.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 17  EEMGFNPIPSEKKSSDKFRGSKGDNE 42
           +E GF  I       D FRGS G  +
Sbjct: 847 KEEGFGGIMIWSVDMDDFRGSCGSGK 872


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,886
Number of Sequences: 317
Number of extensions: 757
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 87
length of database: 114,650
effective HSP length: 47
effective length of query: 40
effective length of database: 99,751
effective search space:  3990040
effective search space used:  3990040
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.5 bits)
S2: 37 (19.0 bits)