Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001781-TA|BGIBMGA001781-PA|IPR012934|Zinc finger,
AD-type
(1137 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 38 0.038
At3g23780.1 68416.m02989 DNA-directed RNA polymerase family prot... 36 0.20
At4g00760.1 68417.m00106 two-component responsive regulator fami... 34 0.47
At2g22795.1 68415.m02704 expressed protein 34 0.47
At3g18090.1 68416.m02300 DNA-directed RNA polymerase family prot... 33 1.1
At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family pr... 33 1.1
At5g14370.1 68418.m01679 expressed protein 33 1.4
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ... 33 1.4
At5g62110.1 68418.m07796 hypothetical protein 32 2.5
At5g15560.1 68418.m01822 hypothetical protein 32 2.5
At1g72480.1 68414.m08381 expressed protein 32 2.5
At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g281... 31 4.4
At2g14010.1 68415.m01557 hypothetical protein and genefinder 31 4.4
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 31 5.8
At3g55990.1 68416.m06221 expressed protein contains Pfam profile... 30 7.7
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont... 30 7.7
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 37.9 bits (84), Expect = 0.038
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 318 DICNPTDVQIVFMQNEDINENSTECFLSEVPHEMSDICNPTNVEIVFVQNEDINENSTEC 377
D+ TDV++V M+ I E S +E P+ SD + T++ +N D ++N+
Sbjct: 765 DLAAATDVEVV-MEEPGIVEGSVG---TEDPNPGSDEADKTDIP----KNNDESDNAVAV 816
Query: 378 FLNEVLHEMSDICNPTNVEIVFAQAEDINENSGRVNQDLISSVDHQQQDAVVNAKSVFRE 437
E + ++V+ Q +D++ + + L+ V +QQ + V+ A++V
Sbjct: 817 EAKEEKKSSPKVPKKVKNQLVYEQ-DDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVSYN 875
Query: 438 KFQRWSPKKLKTKSKI 453
P K++ S I
Sbjct: 876 PLDMVDPSKVEEFSNI 891
>At3g23780.1 68416.m02989 DNA-directed RNA polymerase family protein
similar to SP|P38420 DNA-directed RNA polymerase II 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
2) {Arabidopsis thaliana}; contains Pfam profiles
PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
domain 3, PF04566: RNA polymerase Rpb2 domain 4,
PF04567: RNA polymerase Rpb2 domain 5
Length = 946
Score = 35.5 bits (78), Expect = 0.20
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 355 CNPTNVEIVFVQNEDINENSTECFLNEVLHEMSDICNPTNVEIVFAQAEDINENSGRVNQ 414
C+ + ++ + Q ++EC EVL + NV + + Q + I N + +
Sbjct: 512 CDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLER 571
Query: 415 DLISSVDHQQQDAVVNAKSVFREKFQRWSPKKLKTKSKI----SLDKEKFTTCFVDDLPR 470
+ S + A V+AK + K + KT SKI SL+ + F F+
Sbjct: 572 GMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFP--FI-GANM 628
Query: 471 ATSDI----CNPTNA-HSVFVQDEDKNENSGRVNQDLISSVDHQQQDALVNVRSV 520
+T DI C + A HS+ + K+ G V + ++SS D + A V++R V
Sbjct: 629 STGDIVIGRCTESGADHSIKL----KHTERGIVQKVVLSSNDEGKNFAAVSLRQV 679
>At4g00760.1 68417.m00106 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 367
Score = 34.3 bits (75), Expect = 0.47
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 6/157 (3%)
Query: 676 SDISKPKNLQSAFVQDEDKNEDSGRDIQISXXXXXXXXXXXXXEKNGFS-GSKEDIETAF 734
+++ K N +D DK +D + NG G ++ + F
Sbjct: 158 AELKKNNNNSEVETEDLDKYKDELGQGNKRKERADTDTGEHTEKNNGSDLGDQKKPKLLF 217
Query: 735 EDDDLNEYLQTEVSSPPRSKITNNKPTAISSNADCSG--SPKASVDLKDIAKNEVNQ--D 790
DD NE L+ V + + PT I N + S SP+ +++ K D
Sbjct: 218 ADDLQNETLEA-VPNIEEANNERKAPTEIKKNGESSEKKSPELVCMEEELQKWSAESFID 276
Query: 791 LTSSVDHQQQDALVNARSVPKRNSQHRSPKKLKTNNI 827
LT+SV+++ QD L + + SP + NN+
Sbjct: 277 LTASVENESQDPLESVGDSVGPHEIPLSPPESSNNNV 313
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 34.3 bits (75), Expect = 0.47
Identities = 36/241 (14%), Positives = 90/241 (37%), Gaps = 6/241 (2%)
Query: 668 VNELPRAKSDISKPKNLQSAFVQDEDKNEDSGRDIQISXXXXXXXXXXXXXEKNGFSGSK 727
V + K++ + + ++S+F+++ + ED ++ + S + N S S+
Sbjct: 477 VESSSQEKNEDKETEKIESSFLEETKEKEDETKEKEESSSQEKTEEKETETKDNEESSSQ 536
Query: 728 EDIETAFEDDDLNEYLQTEVSSPPRSKITNNKPTAISSNADCSGSPKASVDLKDIAKNEV 787
E+ + D NE ++ E +S N T + K + K +
Sbjct: 537 EETK-----DKENEKIEKEEASSQEESKENETETKEKEESSSQEETKEKENEKIEKEESA 591
Query: 788 NQDLTSSVDHQQQDALVNARSVPKRNSQHRSPKKLKTNNIQISXXXXXXXXXXXXXETNG 847
Q+ T ++++ + +A + + + +K ++++ + E N
Sbjct: 592 PQEETKEKENEKIEKEESASQEETKEKETETKEKEESSSNESQENVNTESEKKEQVEENE 651
Query: 848 FSGSKEDIETAFEDD-DLNEYLQTEVSSPPRSKITNNKPTAISSNADCSGSPKASVDLED 906
++ E++ E+ E Q+E +S N + +D S +++D
Sbjct: 652 KKTDEDTSESSKENSVSDTEQKQSEETSEKEESNKNGETEVTQEQSDSSSDTNLPQEVKD 711
Query: 907 I 907
+
Sbjct: 712 V 712
>At3g18090.1 68416.m02300 DNA-directed RNA polymerase family protein
similar to SP|P38420 DNA-directed RNA polymerase II 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
2) {Arabidopsis thaliana}; contains Pfam profiles
PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
domain 3, PF04566: RNA polymerase Rpb2 domain 4,
PF04567: RNA polymerase Rpb2 domain 5
Length = 1038
Score = 33.1 bits (72), Expect = 1.1
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 16/175 (9%)
Query: 355 CNPTNVEIVFVQNEDINENSTECFLNEVLHEMSDICNPTNVEIVFAQAEDINENSGRVNQ 414
C+ + ++ + Q ++EC EVL + NV + + Q + I N + +
Sbjct: 603 CDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLER 662
Query: 415 DLISSVDHQQQDAVVNAKSVFREKFQRWSPKKLKTKSKI----SLDKEKFTTCFVDDLPR 470
+ S + A V+ K + K + KT SKI SL+ + F F+
Sbjct: 663 GMFRSEQIRSYKAEVDTKDSEKRKKMDELVQFGKTYSKIGKVDSLEDDGFP--FI-GANM 719
Query: 471 ATSDI----CNPTNA-HSVFVQDEDKNENSGRVNQDLISSVDHQQQDALVNVRSV 520
+T DI C + A HS+ + K+ G V + ++SS D + A V++R V
Sbjct: 720 STGDIVIGRCTESGADHSIKL----KHTERGIVQKVVLSSNDEGKNFAAVSLRQV 770
>At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 456
Score = 33.1 bits (72), Expect = 1.1
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 746 EVSSPPRSKITNNKPTAISSNADCSGSPKASVDLKDIAKNEVNQDLTSSVDHQQQDALVN 805
E+S ++K N P+A+SS+ + K D K K+E N D T S+D + V
Sbjct: 202 ELSRKRKTKSKQNSPSAVSSSKEIE--EKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVR 259
Query: 806 AR 807
AR
Sbjct: 260 AR 261
>At5g14370.1 68418.m01679 expressed protein
Length = 339
Score = 32.7 bits (71), Expect = 1.4
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 617 TRRIKKRKNLQRAFVQDDDKNENSGRGEYSNSASPLLVHVGVRVRKFTACLVNELPRAKS 676
++RIKKRKN + +D + N + + + +++ T+ +NE PR+K
Sbjct: 20 SKRIKKRKNREATTTMEDKSSSNLDASRKIRTKTKKPKFLSLKLELNTSHEINENPRSKK 79
Query: 677 DISKPKNLQSAFVQDED 693
K N + + ++ D
Sbjct: 80 SKKKNNNKKQSKKKEPD 96
>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain; ESTs gb|T44428 and gb|AA395440 come from this
gene
Length = 1218
Score = 32.7 bits (71), Expect = 1.4
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 7/132 (5%)
Query: 678 ISKPKNLQSAFVQDEDKNEDSGRDIQISXXXXXXXXXXXXXEKNG--FSGSKEDIETAFE 735
I+ PK SA+ ++ D + G D+ S E++ G D++ +
Sbjct: 790 IAPPKEKSSAWRKEVDVSSKEGEDVSFSDADSKTGKKQSSGEEDSEQSEGKTSDVDARDK 849
Query: 736 D---DDLNEYLQTEVSSPPRSKITNNKPTAISSNADCSGSPKASVDLKD--IAKNEVNQD 790
+ DD E S PR+K T ++ + S + D D + + VN D
Sbjct: 850 NGSLDDSKVRKGIEADSSPRTKDTRSENGHDDGESTASAGKTVNYDSHDETDSVSSVNPD 909
Query: 791 LTSSVDHQQQDA 802
DH + D+
Sbjct: 910 NGKDKDHGKYDS 921
>At5g62110.1 68418.m07796 hypothetical protein
Length = 691
Score = 31.9 bits (69), Expect = 2.5
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 264 NINENSTECFLNEVTHETSDICNPMNPQIVFVQN-EDINGNSTECFLNEVPHETSDICNP 322
N+N+NS E LN + N MN I+ V +NGNS E LN + +
Sbjct: 539 NVNDNSNEETLNSIAAN-----NEMNFTILDVNTINQVNGNSNEETLNSIVANSEINFTT 593
Query: 323 TDVQIVFMQNEDINENS 339
DV + + + NE +
Sbjct: 594 LDVNTINQVDNNFNEET 610
>At5g15560.1 68418.m01822 hypothetical protein
Length = 239
Score = 31.9 bits (69), Expect = 2.5
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 682 KNLQSAFVQDEDKNEDSGR----DIQISXXXXXXXXXXXXXEKNGFSGSKEDIETAFEDD 737
K L ++ +DE+K ED + D + + N S K+ T +DD
Sbjct: 36 KPLVASGKEDEEKQEDGNKTKREDDESNIEEFIKFNSKEQDISNVTSKQKDKATTEDDDD 95
Query: 738 DLNEYLQTEVSSPPRSKITNN 758
D+ E +Q ++S RS+ +NN
Sbjct: 96 DVKEIIQDDISICCRSEASNN 116
>At1g72480.1 68414.m08381 expressed protein
Length = 509
Score = 31.9 bits (69), Expect = 2.5
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 1033 WKEKKNSVPNKFSGRNGDIETAFEDDDLNEYLQTEVSSPPSLKISNNKPTAISSNADCSG 1092
W +NS FSG +GD FE DD L + S PS ++ N T + AD G
Sbjct: 441 WAPSQNSTRYAFSGSSGDTSAEFEKDDYTLTL-IKPSPIPSHEVKNLSETRLLP-AD-EG 497
Query: 1093 SPNASVDLKDK 1103
P ++ +DK
Sbjct: 498 EPEKDLE-EDK 507
>At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g28170,
At1g35110, At1g44880, At4g19320, At5g36020, At4g03970,
At3g43010, At2g10350; contains Pfam profile PF02902:
Ulp1 protease family, C-terminal catalytic domain
Length = 889
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 728 EDIETAFEDDDLNEYLQTEVSSPPRSKITNNKPTAISSNADCS-GSPKASVDLKDIAKNE 786
+ ++ A + D + TE++ P + S+N D + G+P D+KD NE
Sbjct: 480 DHLDKAQDSSDSTPLINTEITDDPMDVFVTPLQSEHSNNDDANEGNPVYDTDVKDQNANE 539
Query: 787 VNQDLTSSVD 796
+ D VD
Sbjct: 540 EDVDSQMQVD 549
>At2g14010.1 68415.m01557 hypothetical protein and genefinder
Length = 833
Score = 31.1 bits (67), Expect = 4.4
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 1032 GWKEKKNSVPNKFSGRNGDIETAFEDDDLNEYLQTEVSSPPSLKISNNKPTAISSNADCS 1091
G E+ + P S ++ DD ++E +S PP L N +++ NA
Sbjct: 559 GKDEETTAAPPTISDA-ANLSKPSADDIVSERYAERISDPPGLNDEANLSSSVMRNASDP 617
Query: 1092 GSPNASVDLKD 1102
GSP V +D
Sbjct: 618 GSPPTEVVARD 628
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 313 PHETSDICNPTDVQIVFMQNEDINENSTE-CFLSEVPHEMSDICNPTNVEIVFVQNEDIN 371
PHE S+I N QIV M + N E C P E + N + +NE +
Sbjct: 872 PHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVN--EMLGYTDENEPLQ 929
Query: 372 ENSTECFLNEVLHEMSDICNPTNVEIVFAQ 401
+ F N V+ ++ + C+ ++ ++ ++
Sbjct: 930 AMMKDPFGNYVVQKVLETCDDQSLALILSR 959
>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
PF03005: Arabidopsis proteins of unknown function
Length = 487
Score = 30.3 bits (65), Expect = 7.7
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 223 VFMQNEDINENSTECFLSEVPHETSDICNP-TNVQIVSVQDENINENSTECFL---NEVT 278
+FM NED+ + F + PH+ D P T + + VQ+ N + + + + V
Sbjct: 39 IFMYNEDVKSIAEFPFSTSKPHDVHDEATPITEITTLPVQESIKNSDPIQESIKNADSVQ 98
Query: 279 HETSDICNPMNPQI 292
D+ P+ ++
Sbjct: 99 DSVKDVAEPVQEEV 112
>At1g45616.1 68414.m05200 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to disease resistance
protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
Length = 994
Score = 30.3 bits (65), Expect = 7.7
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 225 MQNEDINENSTECFLSEVPHETSDICNPTNVQIVSVQDENINENSTECFLNEVTHETSDI 284
+ N ++EN+ F+ E+P S + N + + V D N+N N LN DI
Sbjct: 328 LSNLVLSENN---FVGEIP---SSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDI 381
Query: 285 CNP-----MNPQIVFVQNEDINGNSTECFLNEVPHETSDICNPTDVQIVFMQNED 334
C+ + P I + N + F +P +I + T + + + Q D
Sbjct: 382 CSNHFTGFLPPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLND 436
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.128 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,075,934
Number of Sequences: 28952
Number of extensions: 1105836
Number of successful extensions: 2752
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2739
Number of HSP's gapped (non-prelim): 32
length of query: 1137
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1048
effective length of database: 9,493,832
effective search space: 9949535936
effective search space used: 9949535936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 65 (30.3 bits)
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