Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001779-TA|BGIBMGA001779-PA|IPR007087|Zinc finger,
C2H2-type
(374 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 46 3e-05
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 42 5e-04
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ... 38 0.011
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 37 0.025
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ... 35 0.10
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ... 33 0.23
At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal hydrolase-r... 33 0.31
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 33 0.41
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 32 0.72
At5g54630.1 68418.m06802 zinc finger protein-related contains Pr... 31 0.95
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ... 31 0.95
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 31 1.3
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 31 1.3
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 31 1.7
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 31 1.7
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 30 2.2
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil... 30 2.2
At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein ... 30 2.2
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r... 30 2.2
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r... 30 2.2
At5g03510.1 68418.m00307 zinc finger (C2H2 type) family protein ... 30 2.9
At3g53600.1 68416.m05920 zinc finger (C2H2 type) family protein ... 30 2.9
At1g43590.1 68414.m05004 hypothetical protein contains Pfam doma... 30 2.9
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 29 3.8
At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein ... 29 3.8
At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein ... 29 3.8
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ... 29 3.8
At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein ... 29 3.8
At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein ... 29 3.8
At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein ... 29 5.0
At5g01860.1 68418.m00105 zinc finger (C2H2 type) family protein ... 29 5.0
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 29 5.0
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r... 29 5.0
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 29 5.0
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 29 5.0
At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein ... 29 6.7
At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein ... 29 6.7
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 29 6.7
At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2... 29 6.7
At1g67030.1 68414.m07622 zinc finger (C2H2 type) family protein ... 29 6.7
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 29 6.7
At5g10970.1 68418.m01275 zinc finger (C2H2 type) family protein ... 28 8.8
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ... 28 8.8
At4g10890.1 68417.m01772 expressed protein 28 8.8
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 28 8.8
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 28 8.8
At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ... 28 8.8
At1g19640.1 68414.m02448 S-adenosyl-L-methionine:jasmonic acid c... 28 8.8
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 46.4 bits (105), Expect = 3e-05
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 283 ENDFNYMCSDCGNKFVNKTRLKDHINWEHL-KNYIHRCSDCKKSQARL-HYHITALHNKE 340
E+ N+ C +CG +F LK H+ L +++ DC S R H + L +K
Sbjct: 61 ESSSNHTCQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRHLLTHKG 120
Query: 341 TPYKCT--TCSARFSWHSCLTRHVRTIHSKEKK 371
+KC C + FS + RHV+ HS + +
Sbjct: 121 KLFKCPKENCKSEFSVQGNVGRHVKKYHSNDNR 153
Score = 36.7 bits (81), Expect = 0.025
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 258 VPCNRTFSSIATFKQHMKMSMKHVPENDFNYMCSD--CGNKFVNKTRLKDHINWEHLKNY 315
+ C + F + ++H HV + CS+ C F N+ LK HI H
Sbjct: 220 IGCGKAFKYPSQLQKHQD---SHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQHIN 276
Query: 316 IHRCSDCKKSQARLHYHITALHNKETP--YKCTT--CSARFSWHSCLTRHVRTIH 366
C K + + H+ +P KC CS+ FS S L +H++ +H
Sbjct: 277 CEICGS-KHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 330
Score = 35.9 bits (79), Expect = 0.044
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 260 CNRTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGNKFVNKTRLKDHINWE-------HL 312
C + F++ K H++ +H+ C CG+K + K +K H+ +
Sbjct: 254 CMKYFTNEECLKSHIRSCHQHIN-------CEICGSKHLKKN-IKRHLRTHDEDSSPGEI 305
Query: 313 KNYIHRCSDCKKSQARLHYHITALHNKETPYKC--TTCSARFSWHSCLTRH 361
K + CS + L H+ A+H+ P+ C C RF++ +H
Sbjct: 306 KCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFAYKHVRNKH 356
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 42.3 bits (95), Expect = 5e-04
Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Query: 188 PFSEGSDVARLRFSCLVCEC--YFGTAAALSYHANKHRIR-YQC--RSCRTRFGTKSKVL 242
P E + F C C F +AL H++ H R Y C C +F SK L
Sbjct: 67 PEPEPEPTTEILFLCSYDGCGKTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSK-L 125
Query: 243 SHHAREHRANGKPVCV--PCNRTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGNKFVNK 300
H H +C C + FS + HMK H EN S C ++ ++
Sbjct: 126 KRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKT---HSQENYHICPYSGCVKRYAHE 182
Query: 301 TRLKDHINWEHLKN 314
+LK+H+ H KN
Sbjct: 183 YKLKNHVAAYHEKN 196
Score = 34.3 bits (75), Expect = 0.13
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 260 CNRTFSSIATFKQHMKMSMKHVPENDFNYMCS--DCGNKFVNKTRLKDHINWEHLKNYIH 317
C + F + K+H + H E NY+C+ CG F L+ H+ +NY H
Sbjct: 115 CGKKFLDSSKLKRHYLI---HTGER--NYICTYEGCGKAFSLDFNLRSHMKTHSQENY-H 168
Query: 318 RC--SDCKKSQA---RLHYHITALHNK 339
C S C K A +L H+ A H K
Sbjct: 169 ICPYSGCVKRYAHEYKLKNHVAAYHEK 195
>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 907
Score = 37.9 bits (84), Expect = 0.011
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 200 FSCLVCECYFGTAAALSYHAN-KHRIRY-------QCRSCRTRFGTKSKVLSHHAREHRA 251
F+C +C F L H +H +++ QC C + FG K ++L H H +
Sbjct: 496 FACAICLDSFVRRKLLEIHVEERHHVQFAEKCMLLQCIPCGSHFGDKEQLLVHVQAVHPS 555
Query: 252 NGKPVCV--PCNRTFSSIATFKQHMKMSMKHVPENDFN------YMCSDCGNKFVNKTRL 303
K + V CN T + K S V +N+ N ++C CG KF L
Sbjct: 556 ECKSLTVASECNLTNGEFSQ-KPEAGSSQIVVSQNNENTSGVHKFVCKFCGLKFNLLPDL 614
Query: 304 KDHINWEHL 312
H EH+
Sbjct: 615 GRHHQAEHM 623
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 36.7 bits (81), Expect = 0.025
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 258 VPCNRTFSSIATFKQHMKMSMKHVPENDFNYMCSD--CGNKFVNKTRLKDHINWEHLKNY 315
+ C + F + ++H HV + CS+ C F N+ LK HI H
Sbjct: 132 IGCGKAFKYPSQLQKHQD---SHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQHIN 188
Query: 316 IHRCSDCKKSQARLHYHITALHNKETP--YKCTT--CSARFSWHSCLTRHVRTIH 366
C K + + H+ +P KC CS+ FS S L +H++ +H
Sbjct: 189 CEICGS-KHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 242
Score = 35.9 bits (79), Expect = 0.044
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 260 CNRTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGNKFVNKTRLKDHINWE-------HL 312
C + F++ K H++ +H+ C CG+K + K +K H+ +
Sbjct: 166 CMKYFTNEECLKSHIRSCHQHIN-------CEICGSKHLKKN-IKRHLRTHDEDSSPGEI 217
Query: 313 KNYIHRCSDCKKSQARLHYHITALHNKETPYKC--TTCSARFSWHSCLTRH 361
K + CS + L H+ A+H+ P+ C C RF++ +H
Sbjct: 218 KCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFAYKHVRNKH 268
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 315 YIHRCSDCKKSQARLHYHITALHNKETPYKCT--TCSARFSWHSCLTRHVRTIHSKEKK 371
Y+ C+ + + L+ H+ L +K +KC C + FS + RHV+ HS + +
Sbjct: 9 YVDDCAASYRRKDHLNRHL--LTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYHSNDNR 65
>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 257
Score = 34.7 bits (76), Expect = 0.10
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 88 DIEAERDTEASSDSFVNALFKCEKCVEAFPNQEDLNDHNLKKHNKSRSIQAQSRLTADFE 147
D + E+D + D+ N F+C C FP + L H H + R + +T+
Sbjct: 76 DKDKEKDKDKDKDNNNNRRFECHYCFRNFPTSQALGGHQ-NAHKRERQHAKRGSMTSYLH 134
Query: 148 QH 149
H
Sbjct: 135 HH 136
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 199 RFSCLVCECYFGTAAALSYHANKHRIRYQCRSCRTRFGTKSKVLSHH 245
RF C C F T+ AL H N H+ Q + G+ + L HH
Sbjct: 94 RFECHYCFRNFPTSQALGGHQNAHKRERQ----HAKRGSMTSYLHHH 136
>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 353
Score = 33.5 bits (73), Expect = 0.23
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 291 SDCGNKFVNKTRLKDHIN-WEHLK-NYIHRCSDCKKSQARLHYH---ITALHNKETPYKC 345
S + KT ++ +N +E L NY R + KK+Q L H NK+ +C
Sbjct: 22 SRVSRNLMKKTGFRESMNHYEELSCNYGLR-ENPKKTQKSLLDHRFCTRRRRNKKILIRC 80
Query: 346 TTCSARFSWHSCLTRHVRTIHSKE 369
C F + CL H++ HS+E
Sbjct: 81 KECGKGFLYEKCLFNHLQVTHSEE 104
>At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1101
Score = 33.1 bits (72), Expect = 0.31
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 288 YMCSDCGNKFVNKTRLKDHINWEHLKNYI 316
+MC C NKF + K+H++ EH +I
Sbjct: 235 WMCRSCSNKFTSAEECKNHLDQEHCAKFI 263
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 32.7 bits (71), Expect = 0.41
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 23/156 (14%)
Query: 224 IRYQCRSCRTRFGTKS--KVLSHHAREHRANGKPVCVPCNRTFSSIATFKQHMKMSMKHV 281
IR C R+R K+ + H KP+ +T + + +Q + H
Sbjct: 1155 IRSPCEGLRSRGKRKATCETSLKHTETSDEEKKPIAKRLKKTPKACSGSRQQEVPTTTH- 1213
Query: 282 PENDFNYMCSDCGNKFVNKTRLKDHINWEHLKNYIHRCSD--CKKSQARLHYHITA---L 336
P + C F +K +L+ H +RC+ C K + R H ++ +
Sbjct: 1214 PNRCY---LEGCKMTFESKAKLQTHKR--------NRCTHEGCGK-KFRAHKYLVLHQRV 1261
Query: 337 HNKETPYKCTT--CSARFSWHSCLTRHVRTIHSKEK 370
H E P++C+ CS F W T H+R +H+ E+
Sbjct: 1262 HKDERPFECSWKGCSMTFKWQWARTEHLR-LHTGER 1296
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 31.9 bits (69), Expect = 0.72
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 225 RYQCRSCRTRFGTKSKVLSHHAREHRANGKPVCVPCNRTFSSIATFKQHM 274
R +C C +F K ++ H + + +P C CN+ S + ++H+
Sbjct: 5 RNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHL 54
>At5g54630.1 68418.m06802 zinc finger protein-related contains
Prosite:PS00028 Zinc finger, C2H2 type, domain
Length = 472
Score = 31.5 bits (68), Expect = 0.95
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 85 TESDIEAERDTEASSDSFVNALFKCEKCVEAFPNQEDLNDHNLKKHNKSRSIQAQS 140
T + E + E++ + N+ C KC E F E H+L KH + ++ S
Sbjct: 209 TNRRVSLEMNRESTINGGNNSSVSCHKCGEQFNKLEAAEAHHLSKHAVTELVEGDS 264
>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 314
Score = 31.5 bits (68), Expect = 0.95
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 80 KEIELTESDIEAERDTEASSDSFVNALFKCEKCVEAFPNQEDLNDHNLKKHNKSRSIQAQ 139
K+ + E D E + D+E S FKCE C + F + + L H H K+++ +
Sbjct: 168 KKKQRVEED-ETDHDSEDYKSSKSRGRFKCETCGKVFKSYQALGGHR-ASHKKNKACMTK 225
Query: 140 S 140
+
Sbjct: 226 T 226
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 221 KHRIRYQCRSCRTRFGTKSKVLSHHAREHRANGKPVCVPCNRTFSSIATFKQHMKMSMKH 280
K +R++C +C F + ++ H + + +P C C + S + ++H+ + H
Sbjct: 12 KISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVP-DH 70
Query: 281 VPENDFNYM-----CSDCGNKFVNKTRLKDHINWEHL 312
+ + + + C+ C F L +H N HL
Sbjct: 71 LSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHL 107
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 221 KHRIRYQCRSCRTRFGTKSKVLSHHAREHRANGKPVCVPCNRTFSSIATFKQHMKMSMKH 280
K +R++C +C F + ++ H + + +P C C + S + ++H+ + H
Sbjct: 12 KISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVP-DH 70
Query: 281 VPENDFNYM-----CSDCGNKFVNKTRLKDHINWEHL 312
+ + + + C+ C F L +H N HL
Sbjct: 71 LSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHL 107
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 165 DFEQHWPLQANLSTDNAHQMTRPPFSEGSDVARLRFSCLVCECYFGTAAALSYHANKHR 223
DF + QA ++ Q + EG D + + C C F + AL H N+HR
Sbjct: 16 DFSKDGNKQALEEGSSSGQRKKKGSKEGKDESGKVYECRFCSLKFCKSQALGGHMNRHR 74
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 243 SHHAREHRANGKP-VCVPCNRTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGNKFVNKT 301
+H+ R+H KP C C + F+ ++ H K K + CS CG+ F +K
Sbjct: 251 THYKRKH--GSKPFACRMCGKAFAVKGDWRTHEKNCGKL-------WYCS-CGSDFKHKR 300
Query: 302 RLKDHI 307
LKDH+
Sbjct: 301 SLKDHV 306
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 30.3 bits (65), Expect = 2.2
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 224 IRYQCRSCRTRFGTKSKVLSHHAREHRANGKPVCVPCNRTFSSIATFKQHM 274
+R +C +C +F ++ H + + +P C C + S + ++H+
Sbjct: 13 LRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLREHL 63
>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
protein contains Pfam domain, PF00096: Zinc finger, C2H2
type; contains Pfam domain, PF01428: AN1-like Zinc
finger
Length = 279
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 256 VCVPCNRTFSSIATFKQHM-KMSMKHVPENDFNY---MCSDCGNKFVNKTRLKDHINWEH 311
VC C FSS+ + +H+ K ++ +N N +C C F + L +HI +H
Sbjct: 214 VCPQCGAKFSSVTSLVEHVEKTHERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIERDH 273
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 275 KMSMKHVPENDFNYMCSDCGNKFVNKTRLKDHINWEHLKN 314
K+ +N +C CG KF + T L +H+ H +N
Sbjct: 200 KLQFSSSKDNGIVEVCPQCGAKFSSVTSLVEHVEKTHERN 239
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 345 CTTCSARFSWHSCLTRHVRTIHSKEKK 371
C C A+FS + L HV H + KK
Sbjct: 215 CPQCGAKFSSVTSLVEHVEKTHERNKK 241
>At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 324 KSQARLHYHITALHNKETPYKCTTCSARFSWHSCLTRHVRTIHSKEKKS 372
K+ ++H I++ ++ Y+C TC+ FS L H R H K + S
Sbjct: 94 KNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGH-RASHKKPRTS 141
>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1147
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 226 YQCRSCRTRFGTKSKVLSHHAREHRANGKP 255
+ CRSC +F K SH +EH A KP
Sbjct: 268 WMCRSCSQKFYYPKKFRSHLEQEHAAKFKP 297
>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1121
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 226 YQCRSCRTRFGTKSKVLSHHAREHRANGKP 255
+ CRSC +F K SH +EH A KP
Sbjct: 268 WMCRSCSQKFYYPKKFRSHLEQEHAAKFKP 297
>At5g03510.1 68418.m00307 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 292
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 190 SEGSDVARLRFSCLVCECYFGTAAALSYHANKHRIRYQCRSCRTRFGTKSKVLSHHAREH 249
S+GS C +C+ F + AL H +HR + + T SHH E
Sbjct: 182 SDGSKKPEKTHECSICKAEFSSGQALGGHMRRHRGLTINANATSAIKTAISSSSHHHHEE 241
Query: 250 RANGK 254
K
Sbjct: 242 SIRPK 246
>At3g53600.1 68416.m05920 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 175
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 218 HANKHRIRYQCRSCRTRFGTKSKVLSHHAREHRAN 252
H NK ++C C FGT + L H R+HR +
Sbjct: 85 HRNKENDMHKCTICDQMFGT-GQALGGHMRKHRTS 118
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 202 CLVCECYFGTAAALSYHANKHR 223
C +C+ FGT AL H KHR
Sbjct: 95 CTICDQMFGTGQALGGHMRKHR 116
>At1g43590.1 68414.m05004 hypothetical protein contains Pfam domain,
PF04827: Protein of unknown function (DUF635)
Length = 168
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 285 DFNY---MCSDCGNKFVNKTRLKDHINWEHLK 313
DF Y M S+ GN +TRL+D EHLK
Sbjct: 121 DFTYSTDMPSNLGNMMATRTRLRDRTKHEHLK 152
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 243 SHHAREHRANGKPVCVPCN-RTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGNKFVNKT 301
+H+ R H +C C+ + FS ++ + H K H D ++CS CG KF K
Sbjct: 295 NHYKRSHCPK-MYMCRRCSVKHFSVLSDLRTHEK----HC--GDIKWVCS-CGTKFSRKD 346
Query: 302 RLKDHIN 308
+L H++
Sbjct: 347 KLMSHVS 353
>At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 199 RFSCLVCECYFGTAAALSYHANKHRIRYQCRSCRTRFGTKSKVLSHHAREHRA-----NG 253
RF C C+ FG+ AL H H+ C + V + +H+ +G
Sbjct: 161 RFECGGCKKVFGSHQALGGHRASHKNVKGCFAITNVTDDPMTVSTSSGHDHQGKILTFSG 220
Query: 254 KPVCVPCNRTFSSIATFKQHMK 275
C C R FSS HM+
Sbjct: 221 HHKCNICFRVFSSGQALGGHMR 242
>At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 431
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 92 ERDTEASSDSFVNALFKCEKCVEAFPNQEDLNDHNLKKHNKSRSIQAQS 140
E D EA+ + N+ C KC E F E H+L KH + ++ S
Sbjct: 182 ENDREAAINGD-NSSVSCHKCGEKFSKLEAAEAHHLTKHAVTELMEGDS 229
>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
weak similarity to S-locus protein 4 (GI:6069478)
[Brassica rapa]; weak similarity to Pre-mRNA cleavage
complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
[Homo sapiens]; contains Prosite PS00028: Zinc finger,
C2H2 type, domain
Length = 828
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 329 LHYHITALHNKETPYKCTTCSARFSWHSCLTRHVRTIHSKEK 370
LH + + + P+ CT+CS R L RH+ +H K+K
Sbjct: 665 LHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHME-LHDKKK 705
>At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 373
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 86 ESDIEAERDTEASSDSFVNALFKCEKCVEAFPNQEDLNDHNLKKHNKSRSIQAQS 140
E+ I + + E SS + +F C C E FP L +H KH S I +S
Sbjct: 108 ETRIHQQTEFEISSS---DEIFPCNSCGEIFPKINLLENHIAIKHAVSELIAGES 159
>At1g27730.1 68414.m03389 zinc finger (C2H2 type) family protein
(ZAT10) / salt-tolerance zinc finger protein (STZ)
identical to salt-tolerance zinc finger protein
GB:CAA64820 GI:1565227 from [Arabidopsis thaliana];
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA zinc finger protein STZ/ZAT10
(STZ/ZAT10) GI:9965730
Length = 227
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 195 VARLRFSCLVCECYFGTAAALSYHANKHRIRY-QCRSCRTRFGTKSKVLSHHAREHRANG 253
V +L + C VC+ F + AL H HR Q S + S + A +
Sbjct: 75 VEKLSYKCSVCDKTFSSYQALGGHKASHRKNLSQTLSGGGDDHSTSSATTTSAVTTGSGK 134
Query: 254 KPVCVPCNRTFSS 266
VC CN++F S
Sbjct: 135 SHVCTICNKSFPS 147
>At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 191
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 83 ELTESDIEAERDTEASSDSFVNALFKCEKCVEAFPNQEDLNDHNLKKHNKSRSIQAQSRL 142
E +ES + E+ D FKC C FP + L H H + R + L
Sbjct: 31 EESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQ-NAHKRERQQTKRFNL 89
Query: 143 TADFEQHWRQSRSIQAQPRFSADFEQHWPLQA 174
++ + + ++ A R +E + L+A
Sbjct: 90 HSNAAAFFHRQQNHIAASRL---YEDRYSLEA 118
>At5g01860.1 68418.m00105 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 215
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 153 SRSIQAQPRFSADFEQHWPLQANLSTDNAHQMT-RPPFSEGS--DVARLR-FSCLVCECY 208
S S +A PR ++ + A S +N ++ R F+E S + A+ R F+C C+
Sbjct: 18 SSSHEAIPRTKGKTKEE--VTAEPSKENQQRLEFRFLFNESSTRNEAKARVFACTFCKKE 75
Query: 209 FGTAAALSYHANKHR 223
F T+ AL H N H+
Sbjct: 76 FSTSQALGGHQNAHK 90
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 272 QHMKMSMKHVPENDFNYMCSDCGNKFVNKTRLKDHINWEHLKNYIHRCSDCKKSQARLHY 331
+HMK + V + ++ S C N F R D W+ L + +C + +LH+
Sbjct: 1024 EHMKRNRYVVVDPRLTFLLSSCANAF-RSCRKPDTFKWDKLLTRFSK-GECLNREPQLHW 1081
>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1086
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 226 YQCRSCRTRFGTKSKVLSHHAREHRANGKP 255
+ CR+C +F + + +H +EH A KP
Sbjct: 230 WMCRTCSKKFSSPEECKNHLGQEHAAEFKP 259
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 200 FSCLVCECYFGTAAALSYHANKHRIR-YQCRSCRTRFG--TKSKVLSHHAREHRAN 252
F C +CE F + AL H H I+ Q + G T+SK+LS + H+ +
Sbjct: 193 FKCSICEKVFTSYQALGGHKASHSIKAAQLENAGADAGEKTRSKMLSPSGKIHKCD 248
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 243 SHHAREHRANGKPVCVPCNRTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGNKFVNKTR 302
+H+ R+H A C +TF+ ++ H K K + C CG+ F +K
Sbjct: 175 THYKRKHGAKPFRCRKKCEKTFAVRGDWRTHEKNCGKL-------WFCV-CGSDFKHKRS 226
Query: 303 LKDHI 307
LKDH+
Sbjct: 227 LKDHV 231
>At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 137
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 177 STDNAHQMTRPPFSEGSDVARLRFSCLVCECYFGTAAALSYHANKHR 223
S A + R S S V R + C C+ F A AL H N HR
Sbjct: 12 SETGAVRHRRTSSSSVSTVTRRMYECTFCKRGFTNAQALGGHMNIHR 58
>At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 253
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 83 ELTESDIEAERDTEASSDSFVNALFKCEKCVEAFPNQEDLNDHNLKKHNKSRSI 136
E E D + T+ +S S N F+C C FP + L H H + R +
Sbjct: 68 EEEEEDQTGDNSTDNNSISH-NRRFECHYCFRNFPTSQALGGHQ-NAHKRERQL 119
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 243 SHHAREHRANGKP-VCVPCNRTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGNKFVNKT 301
+H+ R+H +P C C + F+ ++ H K K + CS CG+ F +K
Sbjct: 329 THYKRKHGV--RPFACRRCGKAFAVKGDWRTHEKNCGKL-------WYCS-CGSDFKHKR 378
Query: 302 RLKDHI 307
LKDH+
Sbjct: 379 SLKDHV 384
>At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2)
identical to Cys2/His2-type zinc finger protein 2
[Arabidopsis thaliana] gi|6009885|dbj|BAA85107
Length = 273
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 300 KTRLKDHINWEHLKNYIHRCSDCKKSQARLHYHITAL----HNKETPYKCTTCSARFSWH 355
K++ +D E+L + + + SQ R H +L +K PYKC C F +
Sbjct: 59 KSQNQDLTEEEYLALCLLMLAKDQPSQTRFHQQSQSLTPPPESKNLPYKCNVCEKAFPSY 118
Query: 356 SCLTRH 361
L H
Sbjct: 119 QALGGH 124
Score = 28.3 bits (60), Expect = 8.8
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 181 AHQMTRPPFSEGSDVARLRFSCLVCECYFGTAAALSYHANKHRIRYQCRSCRTRFGTKSK 240
+ +T PP S+ L + C VCE F + AL H HRI+ T + +
Sbjct: 92 SQSLTPPPESKN-----LPYKCNVCEKAFPSYQALGGHKASHRIKPPTVISTTADDSTAP 146
Query: 241 VLSHHAREHR---ANGK-PVCVPCNRTF 264
+S A E A+GK C C++ F
Sbjct: 147 TISIVAGEKHPIAASGKIHECSICHKVF 174
>At1g67030.1 68414.m07622 zinc finger (C2H2 type) family protein
(ZFP6) identical to zinc finger protein, ZFP6
gi|790683|gb|AAA87302; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 197
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/73 (23%), Positives = 26/73 (35%)
Query: 177 STDNAHQMTRPPFSEGSDVARLRFSCLVCECYFGTAAALSYHANKHRIRYQCRSCRTRFG 236
+T +Q + P GS ++ C C F + AL H N H+ Q
Sbjct: 18 TTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMLA 77
Query: 237 TKSKVLSHHAREH 249
T+ H+ H
Sbjct: 78 TRGLPRHHNFHPH 90
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 272 QHMKMSMKHVPENDFNYMCSDCGNKFVNKTRLKDHINWEHLKNYIHRCSDCKKSQARLHY 331
+HMK + V + ++ S C N F R D W+ L + +C + +LH+
Sbjct: 1010 EHMKRNRYVVVDPRLTFLLSSCANAF-RSCRKPDTFKWDKLLTRFPK-GECLNREPQLHW 1067
>At5g10970.1 68418.m01275 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type domain, Prosite:PS00028
Length = 272
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 187 PPFSEGSDVARLRFSCLVCECYFGTAAALSYHANKHR 223
P F+ + + FSC C+ F ++ AL H N H+
Sbjct: 91 PSFNGSTSTEQKLFSCNYCQRTFYSSQALGGHQNAHK 127
>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 586
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 257 CVPCNRTFSSIATFKQHMKMSMK-HVPENDFNYMCSDCGNKFVNKTRLKD 305
C C+R F S F++H +M + PE DF D F NK D
Sbjct: 63 CEKCSREFCSPVNFRRHNRMHRRQRKPEKDFGKE-RDALGAFWNKLSATD 111
>At4g10890.1 68417.m01772 expressed protein
Length = 527
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 17 LNTQNTLIIN-YDPETSEELDWHIAASEEKETPSDQQCSETE-TVVQP 62
+NT TL Y + + D A+SE K PSDQ+C+ TV++P
Sbjct: 297 VNTGETLTFQAYLVDICDPKDGSKASSEPKVEPSDQKCARKPFTVLRP 344
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 243 SHHAREHRANGKP-VCVPCNRTFSSIATFKQHMKMSMKHVPENDFNYMCSDCGNKFVNKT 301
+H+ R+H KP +C C + F+ ++ H K K + C CG+ F +K
Sbjct: 290 THYKRKHGI--KPFMCRKCGKAFAVRGDWRTHEKNCGKL-------WYCI-CGSDFKHKR 339
Query: 302 RLKDHI 307
LKDHI
Sbjct: 340 SLKDHI 345
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 199 RFSCLVCECYFGTAAALSYHANKHRIRYQCRSCRTRFGTKSKVLSHHAREHRANGKPVCV 258
+F C C F + AL H H+ + + + K + H + +++ N C
Sbjct: 46 QFECKTCNKRFSSFQALGGHRASHK--------KPKLTVEQKDVKHLSNDYKGNHFHKCS 97
Query: 259 PCNRTFSSIATFKQHMK 275
C+++F + HM+
Sbjct: 98 ICSQSFGTGQALGGHMR 114
>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 361
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 200 FSCLVCECYFGTAAALS----YHANKHRIRYQCRSCRTRFGTKSKVLSHHAREHRANGKP 255
F C C F + AL H N++ + Y + R + K++ A++H+ +
Sbjct: 9 FLCKYCYKTFPSGKALGGHIRIHTNENSVGYNGNK-KKRLVDQRKMM---AQKHKQQQQV 64
Query: 256 VCVPCNRTFSSIATFKQHM 274
C C R F S+ + HM
Sbjct: 65 GCRECGRVFVSLKALRGHM 83
>At1g19640.1 68414.m02448 S-adenosyl-L-methionine:jasmonic acid
carboxyl methyltransferase (JMT) nearly identical to
gi:13676829
Length = 389
Score = 28.3 bits (60), Expect = 8.8
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 274 MKMSMKHVPENDFNYMCS 291
+++S+ +P NDFNY+C+
Sbjct: 91 LRVSLNDLPSNDFNYICA 108
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.127 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,797,185
Number of Sequences: 28952
Number of extensions: 355867
Number of successful extensions: 1283
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1198
Number of HSP's gapped (non-prelim): 109
length of query: 374
length of database: 12,070,560
effective HSP length: 82
effective length of query: 292
effective length of database: 9,696,496
effective search space: 2831376832
effective search space used: 2831376832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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