Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001776-TA|BGIBMGA001776-PA|IPR007087|Zinc finger,
C2H2-type
         (1293 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     26   1.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    26   1.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           26   1.9  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    25   3.4  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    25   3.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   4.4  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   5.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   5.9  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 256 TDPPLPSKSNILKEAQDAV--AFTSFDEPSTIAAPKSKAQKQR 296
           T PP+ S SNIL+   D       + D  S++ +P S  Q  R
Sbjct: 118 TQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSR 160


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 256 TDPPLPSKSNILKEAQDAV--AFTSFDEPSTIAAPKSKAQKQR 296
           T PP+ S SNIL+   D       + D  S++ +P S  Q  R
Sbjct: 118 TQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSR 160


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 256 TDPPLPSKSNILKEAQDAV--AFTSFDEPSTIAAPKSKAQKQR 296
           T PP+ S SNIL+   D       + D  S++ +P S  Q  R
Sbjct: 118 TQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSR 160


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 105 DDEDENEIEVKFEEEHNISKAMV 127
           DDE+   ++V+F ++HN++  M+
Sbjct: 329 DDEESVALKVQFAKDHNMAGLMI 351


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 212 LYKCDVCYCTYDTELKLETHARRH 235
           L++C VC+  +   L L+ H R H
Sbjct: 194 LHQCPVCHKKFTNALVLQQHIRLH 217


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
            transcriptase andRNase H protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 1275 IKSSVCPTVVGKRWCQEQR 1293
            +K+ + PT++G  W  EQR
Sbjct: 171  VKNLIKPTILGADWLNEQR 189


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 174 KTHSKYTAKLYKCEKCLVSYDXXXXXXXXXXXXXXXXNLYKCDVCYCTYDTELKLETHAR 233
           +THS    K Y+C  C  S+                   ++C VC   +     + TH R
Sbjct: 14  RTHSG--EKPYRCIDCNKSFSQAANLTAHVRTHSGEKP-FRCPVCDRRFSQSSSVTTHMR 70

Query: 234 RH 235
            H
Sbjct: 71  TH 72


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 174 KTHSKYTAKLYKCEKCLVSYDXXXXXXXXXXXXXXXXNLYKCDVCYCTYDTELKLETHAR 233
           +THS    K Y+C  C  S+                   ++C VC   +     + TH R
Sbjct: 270 RTHSG--EKPYRCIDCNKSFSQAANLTAHVRTHSGEKP-FRCPVCDRRFSQSSSVTTHMR 326

Query: 234 RH 235
            H
Sbjct: 327 TH 328


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,501
Number of Sequences: 317
Number of extensions: 11697
Number of successful extensions: 48
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 14
length of query: 1293
length of database: 114,650
effective HSP length: 65
effective length of query: 1228
effective length of database: 94,045
effective search space: 115487260
effective search space used: 115487260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)