Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001774-TA|BGIBMGA001774-PA|undefined
         (57 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to e...    32   0.053
At1g69340.1 68414.m07956 appr-1-p processing enzyme family prote...    26   3.5  
At3g28830.1 68416.m03597 expressed protein                             25   8.0  

>At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to
          expansin - Prunus armeniaca, EMBL:U93167;
          alpha-expansin gene family, PMID:11641069
          Length = 296

 Score = 31.9 bits (69), Expect = 0.053
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 22 GHHVSLHRHTARGCHTAMGCHTATGCHTATGCH 54
          G H S   H A G H + G H + G H + G H
Sbjct: 24 GAHPSHGAHPAHGAHPSHGAHPSHGAHPSHGAH 56



 Score = 30.3 bits (65), Expect = 0.16
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 12 PKACPG-HDEFGHHVSLHRHTARGCHTAMGCHTATGCHTATG 52
          P   PG H   G H +   H + G H + G H + G H + G
Sbjct: 19 PGGRPGAHPSHGAHPAHGAHPSHGAHPSHGAHPSHGAHPSHG 60



 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 18 HDEFGHHVSLHRHTARGCHTAMGCHTATGCHTATG 52
          H   G H S   H + G H + G H + G   + G
Sbjct: 32 HPAHGAHPSHGAHPSHGAHPSHGAHPSHGALPSHG 66


>At1g69340.1 68414.m07956 appr-1-p processing enzyme family protein
           contains Pfam domain PF01661: Appr-1-p processing enzyme
           family
          Length = 562

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 30  HTARGCHTAMGCHTATGCHTATGCHT 55
           H++ G H A G   A  C T  GC T
Sbjct: 114 HSSPGLHVAAGPGLAEQCATLGGCRT 139


>At3g28830.1 68416.m03597 expressed protein 
          Length = 539

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 12  PKACPGHDEFGHHVSLHRHTARGCHTAMGCHTATGCHTATGCHTA 56
           PKA P     G   S    +A+G  +A G  +A G  +A G  +A
Sbjct: 285 PKASPSGSVSGKSSSKGSASAQGSASAQGSASAQGSASAQGSASA 329


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.132    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,632
Number of Sequences: 28952
Number of extensions: 40776
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 8
length of query: 57
length of database: 12,070,560
effective HSP length: 38
effective length of query: 19
effective length of database: 10,970,384
effective search space: 208437296
effective search space used: 208437296
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)