Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001773-TA|BGIBMGA001773-PA|IPR004097|DHHA2
(329 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30500.1 68415.m03715 kinase interacting family protein simil... 34 0.11
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r... 31 1.1
At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3... 30 2.5
At3g47910.1 68416.m05224 expressed protein low similarity to non... 30 2.5
At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative s... 30 2.5
At4g06599.1 68417.m01024 ubiquitin family protein contains Pfam ... 29 3.3
At3g53520.2 68416.m05910 NAD-dependent epimerase/dehydratase fam... 29 4.3
At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2... 29 4.3
At1g05370.1 68414.m00544 expressed protein 29 4.3
At1g67510.1 68414.m07690 leucine-rich repeat family protein cont... 29 5.7
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 5.7
At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+ antipo... 28 7.5
At4g29420.1 68417.m04201 F-box family protein contains F-box Pfa... 28 7.5
At4g00440.1 68417.m00061 expressed protein 28 7.5
At3g17205.1 68416.m02196 HECT-domain-containing protein / ubiqui... 28 7.5
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 7.5
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 28 7.5
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 28 9.9
At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containi... 28 9.9
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 28 9.9
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 28 9.9
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 34.3 bits (75), Expect = 0.11
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 206 NKGTPEDEEMIDLLERVLMIENPIDERQRVLDELTKAKSDVSKLTASQLLRKDVKIVEDV 265
NK E +E++ L ER+ M++ + +R + L A SD + + + +K
Sbjct: 319 NKLNAEKKEVLKLQERLAMVKTSLQDRDNEIRALKTAVSDAEQKIFPE--KAQIKGEMSK 376
Query: 266 LIPSFPMLVEEFLRLDDAVDAVKEVLSQRECLVALLLGMDLTSGMKRDMAVMSPNNENLA 325
++ L E+ L+ + +KE ++ E L G + SGM+ + V+
Sbjct: 377 MLEERSQLGEQLRELESHIRLIKEEKAETE--EKLRGGTEKISGMRDESNVLREEIGKRE 434
Query: 326 EKV 328
EK+
Sbjct: 435 EKI 437
>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1568
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 206 NKGTPEDEEMIDLLERVLMIENPIDERQRVLDELTKAK 243
N G E +E++ R L IENPID + L + T+ K
Sbjct: 110 NDGKREYDEVVQECHRALSIENPIDPAKESLQDETQLK 147
>At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3)
identical to UDP-glucuronic acid decarboxylase
[Arabidopsis thaliana] GI:14595666; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family; identical to cDNA UDP-glucuronic acid
decarboxylase (UXS3) GI:14595665
Length = 342
Score = 29.9 bits (64), Expect = 2.5
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 187 SQMLYSTIILDTVNFSKEFNKGTPEDEEMIDLLERVLMIENPIDERQRV---LDELTKAK 243
S M+ I L N + N G P + M++L E V + NP E + V D+ + K
Sbjct: 245 SDMVDGLIRLMEGNDTGPINIGNPGEFTMVELAETVKELINPSIEIKMVENTPDDPRQRK 304
Query: 244 SDVSKLTASQLLRKDVKIVEDVLIPSFPMLVEEF-LRLD 281
D+SK A ++L + K+ L P++ E+F LRL+
Sbjct: 305 PDISK--AKEVLGWEPKV---KLREGLPLMEEDFRLRLN 338
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 206 NKGTPEDEEMIDLLERVLMIENPIDERQRVLDELTKAK 243
N+G E EE++ R L IE PID + L + T+ K
Sbjct: 150 NEGKREYEEVVQECHRALSIEYPIDPARESLQDETQLK 187
>At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative
similar to cytosolic aminopeptidase P from [Homo
sapiens] GI:8489879, [Rattus norvegicus] GI:2760920;
contains Pfam profile PF00557: metallopeptidase family
M24
Length = 569
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 262 VEDVLIPSFPMLVEEFLRLDDAVDAVKEVLSQRECLVALLLGMDLTSGMKRDMAVMSPNN 321
+ DVL P + ++ FL DA + +KEV++++ + L ++L + +D P+
Sbjct: 15 IADVLAPGGRVGIDPFLFSADAAEELKEVIAKKNHELVYLYNVNLVDEIWKDSRPKPPSR 74
Query: 322 E 322
+
Sbjct: 75 Q 75
>At4g06599.1 68417.m01024 ubiquitin family protein contains Pfam
domian PF00240: Ubiquitin family
Length = 340
Score = 29.5 bits (63), Expect = 3.3
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 203 KEFNKGTPEDEEMIDLLERVLMIENPIDERQRVL-DELTKAKSDVSKLTASQLLRKDVKI 261
KE+ D+ + +L R+ ++ + +RQ++L ++ SD S L +S + +K+
Sbjct: 33 KEYTVRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNKLSDDSLLLSSISFKPSLKM 92
Query: 262 -----VEDVLI---PSFPMLVEEF-LRLDDAVDAV-KEVLSQR 294
VED +I P +V++F L ++AVD KEV Q+
Sbjct: 93 TMIGTVEDDIIVDQAESPEIVDDFELGKEEAVDVKDKEVNKQK 135
>At3g53520.2 68416.m05910 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 426
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 205 FNKGTPEDEEMIDLLERVLMIENP---IDERQRVLDELTKAKSDVSKLTASQLLRKDVKI 261
FN G P + M++L E V + +P I+ + D+ K K D+SK A + L + KI
Sbjct: 343 FNLGNPGEFTMLELAEVVKEVIDPSATIEFKPNTADDPHKRKPDISK--AKEQLNWEPKI 400
Query: 262 VEDVLIPSFPMLVEEF 277
L P +V +F
Sbjct: 401 ---SLREGLPRMVSDF 413
>At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2)
similar to sodium proton exchanger Nhx1 GB:AAD16946
[Arabidopsis thaliana]; Member of The Monovalent
Cation:Proton Antiporter (CPA1) Family, PMID:11500563
Length = 546
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 102 LRDSKCNVVLVDHHVLAANDVFLSAFVTEIIDHRPLDKSRWTYKGDTRLIIEIVGSCATL 161
L +V DH + + ++F++ I+ L+++RW + T L+I + L
Sbjct: 7 LTSKMLSVSTSDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVVIL 66
Query: 162 VTRRIKEMCLLLGKEFQFF 180
+ R K LL+ E FF
Sbjct: 67 LISRGKNSHLLVFSEDLFF 85
>At1g05370.1 68414.m00544 expressed protein
Length = 439
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 212 DEEMIDLLERVLMIENPIDERQRVLDELTKAKSDVSKLTASQLLRKDVKIVEDVLIPSFP 271
DE +L E + + DE + VL + + K D KL + L + V +V I +
Sbjct: 81 DEFTAELAEGLAYVAGLDDECRPVL--VFRIKQDYQKLHTQKQLTRLVVFTLEVAISTMS 138
Query: 272 MLVEEFLRLDDAVDA 286
VE+F+ L DA+ A
Sbjct: 139 RNVEQFVILFDAIAA 153
>At1g67510.1 68414.m07690 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 719
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 169 MCLLLGKEFQFFKDHMPCSQMLYSTIILDTVNFSKEFNKGTPEDEEMIDLLERVLMIENP 228
M LL GK D P S ST++++ + K KG E+ + D+++ +L+ E
Sbjct: 628 MELLTGKS----PDSSPLSSSSTSTVVVEVPDLVKWVRKGFEEETPLSDMVDPMLLQE-- 681
Query: 229 IDERQRVL 236
+ +Q+VL
Sbjct: 682 VHAKQQVL 689
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 159 ATLVTRRIKEMCLLLGKEFQFFKDHMPCSQMLYSTIILDTVNFSKEFNKGTPEDEEMIDL 218
+ ++ + I E L+ + F + ++H PC + +D + + F++GT D E+
Sbjct: 207 SAIIDKYIGESARLIREMFNYAREHQPCIIFMDE---IDAIG-GRRFSEGTSADREIQRT 262
Query: 219 LERVLMIENPIDERQRVLDELTKAKSDV 246
L +L + D+ +V + + DV
Sbjct: 263 LMELLNQLDGFDQLGKVKMIMATNRPDV 290
>At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+
antiporter (NHX1) identical to Na+/H+ exchanger
[Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium
proton exchanger Nhx1 [Arabidopsis thaliana]
gi|4324597|gb|AAD16946; Member of The Monovalent
Cation:Proton Antiporter (CPA1) Family, PMID:11500563
Length = 538
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 113 DHHVLAANDVFLSAFVTEIIDHRPLDKSRWTYKGDTRLIIEIVGSCATLVTRRIKEMCLL 172
DH + A ++F++ I+ L+++RW + T L+I + L+ + K LL
Sbjct: 16 DHASVVALNLFVALLCACIVLGHLLEENRWMNESITALLIGLGTGVTILLISKGKSSHLL 75
Query: 173 LGKEFQFF 180
+ E FF
Sbjct: 76 VFSEDLFF 83
>At4g29420.1 68417.m04201 F-box family protein contains F-box
Pfam:PF00646 ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 446
Score = 28.3 bits (60), Expect = 7.5
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 194 IILDTVNFSKEFNKGTPEDEEMIDLLERVLMIENPIDERQRVLDELTKAKSDVSKLTASQ 253
+ L V F KE+ ED LE + + + I R D L S+ SKL +
Sbjct: 104 LYLTDVEFVKEWLPRVRED------LENLSISDFWIQSCWRKSDILALISSNCSKLVKLE 157
Query: 254 LLRKDVKIVEDVLIPSFPMLVEEFLRLDD 282
+ + +V +P+ L EF+RLDD
Sbjct: 158 VKNAWLSVVGLTEMPNLRYLTLEFIRLDD 186
>At4g00440.1 68417.m00061 expressed protein
Length = 831
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 192 STIILDTVNFSKEFNKGTPEDEEMIDLLERVLMIENPIDERQRVLDELTKAKSDVSKLTA 251
S ++ VN KE + PE+ I + + + P D Q + E + D+ TA
Sbjct: 456 SADFINLVNIKKETHASQPEENTDIQVCN---LSKEPDDSIQPIASEPNEKSVDIEDETA 512
Query: 252 SQLLRKDVKIVEDVLIPS 269
++ +DV+IP+
Sbjct: 513 NEDNMFSAGSADDVMIPN 530
>At3g17205.1 68416.m02196 HECT-domain-containing protein /
ubiquitin-transferase family protein weak similarity to
ubiquitin-protein ligase 2 [Arabidopsis thaliana]
GI:7108523; contains Pfam profile PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 4 NDYDNINIVIGNESCDLDSAVCSIVYALYLNWQHNQIKCKVCTKDKRGASSKDDIFI 60
N D N+V+ C LD A+ + A + +K + ++G+S +DD+ I
Sbjct: 168 NTLDTANVVLSQPECSLDMAIDIALVATFFLETLPPVKSSE-GESRQGSSDEDDMLI 223
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 28.3 bits (60), Expect = 7.5
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 228 PIDERQRVLDELTKAKSDVSKLTASQLLRKDVKIVEDVLIPSFPMLVEEFLRLDDAVDAV 287
P +E +L L + ++ + + L + VK V ++L ++ +FL+LD + AV
Sbjct: 497 PRNEDTNLLQSLAQVQTPRKVVLSGTLYQNHVKEVFNIL----NLVRPKFLKLDTSKSAV 552
Query: 288 KEVLSQRECLVALLLGMDLTSGMKRDMAVM 317
K +L+ C V L +G DMA M
Sbjct: 553 KRILAYTPCDVRGRL-----TGSNSDMASM 577
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 194 IILDTVNFSKEFNKGTPEDEEMIDLLERVLMIENPIDERQRVLDELTKAKSDVSKLTASQ 253
+I+D ++ K+F K E +E +N + Q+V +EL + K+ S+ Q
Sbjct: 370 VIVDLLHQVKDFEKKVKERKEWAQ--------KNAMQAAQKVSEELAELKTLSSEREGIQ 421
Query: 254 LLRKDVKIVED 264
LL+K + VE+
Sbjct: 422 LLKKGKQAVEE 432
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 159 ATLVTRRIKEMCLLLGKEFQFFKDHMPCSQMLYSTIILDTVNFSKEFNKGTPEDEEMIDL 218
+ ++ + I E L+ + F + ++H PC + +D + + F++GT D E+
Sbjct: 207 SAIIDKYIGESARLIREMFNYAREHQPCIIFMDE---IDAIG-GRRFSEGTSADREIQRT 262
Query: 219 LERVLMIENPIDERQRVLDELTKAKSDV 246
L +L + D +V + + DV
Sbjct: 263 LMELLNQLDGFDNLGKVKMIMATNRPDV 290
>At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1038
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 64 NMVRQDFALKTEVMYLFNKLGITEGDLIFRNDYDLCSLLRDSKCNVVLVDHHVLAANDVF 123
N + D ++ ++ ++ KLG+ + + +LL D K + + H+ + N V
Sbjct: 392 NKIPADEVIRGLIIRIYGKLGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGN-VV 450
Query: 124 LSAFVTEIIDHRPLDKSRWTY 144
+ V E++ R + SR+ Y
Sbjct: 451 KALDVIEMMKTRDIPLSRFAY 471
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 108 NVVLVDHHVLAANDVFLSAFVTEIID--HRPLDKSRWTYKGDTRLIIEIVGSCAT 160
N VL H +L DV + I D R LD R TY RLI +I+ S T
Sbjct: 186 NSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 108 NVVLVDHHVLAANDVFLSAFVTEIID--HRPLDKSRWTYKGDTRLIIEIVGSCAT 160
N VL H +L DV + I D R LD R TY RLI +I+ S T
Sbjct: 186 NSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.138 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,620,593
Number of Sequences: 28952
Number of extensions: 317911
Number of successful extensions: 847
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 22
length of query: 329
length of database: 12,070,560
effective HSP length: 81
effective length of query: 248
effective length of database: 9,725,448
effective search space: 2411911104
effective search space used: 2411911104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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