Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001766-TA|BGIBMGA001766-PA|IPR005221|Phosphatidylserine
decarboxylase, IPR003817|Phosphatidylserine decarboxylase-related
         (288 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   5e-22
SB_51699| Best HMM Match : SAM_2 (HMM E-Value=1.5)                     31   0.83 
SB_347| Best HMM Match : TIR (HMM E-Value=0.0019)                      31   1.4  
SB_10120| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_47632| Best HMM Match : AAA_5 (HMM E-Value=0.00038)                 28   7.7  

>SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score =  101 bits (243), Expect = 5e-22
 Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 10/128 (7%)

Query: 161 SGKLLSVNPWLAKLIPGLFTVNERAVYVGEWEYGFFSMTAVGATNVGSIEIFKDPELRTN 220
           +G+LLSV+P + ++I GLF  NER V  G W++G+F+  AVGATNVGSI +  D  LRTN
Sbjct: 46  TGELLSVHPGVQRIISGLFNHNERVVINGTWDHGYFAFAAVGATNVGSIYVNFDEGLRTN 105

Query: 221 -----TKGKRNRV----NELELGQVCMSKGELFGQFNMGSTIILLFEAPKDFKFDMAAGD 271
                  G  + +    N  + G+  ++KG+  G F +GSTI+L+FEAP++F+F +  G 
Sbjct: 106 QAVPFIPGSYSEIMFDGNGEKQGR-SLAKGDQIGGFKLGSTIVLVFEAPENFRFCVEPGH 164

Query: 272 KVLVGQSL 279
           K+  GQ L
Sbjct: 165 KIKYGQRL 172


>SB_51699| Best HMM Match : SAM_2 (HMM E-Value=1.5)
          Length = 442

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 78  DGVVLNCGPADTDKIEQVKGVTYSLEEFLGENKWLKRKDESYYNSLLKNKENILHQC 134
           DG +  C   D + +E +    ++ +E    ++WL+ KD  YY  ++ +   ++ +C
Sbjct: 387 DGEMAVC--QDAEVLESLGNECFTTQEGAKVDRWLETKDRFYYQDVINHGYTMIREC 441


>SB_347| Best HMM Match : TIR (HMM E-Value=0.0019)
          Length = 295

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 5/46 (10%)

Query: 67  YISAAPCVSPCDGVV--LNCGPADTDKIEQVKGVTYSLEEFLGENK 110
           YI+  P +    G++  ++C P DT+K+E+     Y+++E+L  NK
Sbjct: 99  YITTIPTLPTYMGLIQYIDCRPRDTEKLEK---AMYAIKEWLSSNK 141


>SB_10120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 5/46 (10%)

Query: 67  YISAAPCVSPCDGVV--LNCGPADTDKIEQVKGVTYSLEEFLGENK 110
           YI+  P +    G++  ++C P DT+K+E+     Y+++E+L  NK
Sbjct: 312 YITTIPTLPTYMGLIQYIDCRPRDTEKLEK---AMYAIKEWLSSNK 354


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 108  ENKWLKRKDESYYNSLLKNKENILHQCIIYLAPGDYHRFH 147
            E K   RKD S  ++  K+K N+    ++ L P  Y+  H
Sbjct: 1454 EKKKKSRKDSSNSDTKKKHKRNLCVMNVVLLVPNVYYSLH 1493


>SB_47632| Best HMM Match : AAA_5 (HMM E-Value=0.00038)
          Length = 1172

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 32  IRMFSVNLNDAAVT-DLKYYKSLSAFFTRPLRDGARYISAAPCVSPCDGVVLNCGPADTD 90
           +  F +++ DA +    ++Y   S     P+ +   ++S    +    G  L  GP  T 
Sbjct: 498 VEPFLIHMLDAQLPYGCEFYGDESGLALTPITERC-FLSLTQAIWGFSGGALQ-GPTGTG 555

Query: 91  KIEQVKGVTYSLEEFL 106
           K E VKG+ Y L  +L
Sbjct: 556 KTETVKGLAYLLGRYL 571


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,606,151
Number of Sequences: 59808
Number of extensions: 399251
Number of successful extensions: 913
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 6
length of query: 288
length of database: 16,821,457
effective HSP length: 81
effective length of query: 207
effective length of database: 11,977,009
effective search space: 2479240863
effective search space used: 2479240863
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)